Are these really transcription factors?

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In the spirit of community annotation, we welcome your opinion for any of the putative factors listed in the table below. The first column is the Gene Name. In the second column, add yes or no to the existing votes. LIkewise, use the next two columns to vote on whether or not the gene is a positive or negative regulator. Please feel free to add any comments. Finally, if you have any evidence (literature, personal communications, etc) please add them in that column. This poll is being done in collaboration with ERIC-BRC .

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A-G

<protect>

Gene name (bnum) Is this a regulator Pos. regulator? Neg. regulator? Comments Evidence

cobB (b1120)

<poll>ABE-0003781-regulator? Y|Y N|N</poll>

<poll>ABE-0003781-positive? Y|Y N|N</poll>

<poll>ABE-0003781-negative? Y|Y N|N</poll>

In Salmonella, CobB catalyzes a step in cobalamin synthesis.

CobB has sequence similarity to eukaryotic Sir2 proteins and, in Salmonella, is required for transcription of the prpBCDE operon.

PMID:9822644[1] PMID:9851993[2]

glpR (b3423)

<poll>ABE-0011176-regulator? Y|Y N|N</poll>

<poll>ABE-0011176-positive? Y|Y N|N</poll>

<poll>ABE-0011176-negative? Y|Y N|N</poll>

Repressor of transcription of genes/operons in the glycerol-3-phosphate regulon.

PMID:3316209[3]

betI (b0313)

<poll>ABE-0001076-regulator? Y|Y N|N</poll>

<poll>ABE-0001076-positive? Y|Y N|N</poll>

<poll>ABE-0001076-negative? Y|Y N|N</poll>

PMID:8626294[4]

crl (b0240)

<poll>ABE-0000821-regulator? Y|Y N|N</poll>

<poll>ABE-0000821-positive? Y|Y N|N</poll>

<poll>ABE-0000821-negative? Y|Y N|N</poll>

PMID:17332743[5]

gntR (b3438)

<poll>ABE-0011226-regulator? Y|Y N|N</poll>

<poll>ABE-0011226-positive? Y|Y N|N</poll>

<poll>ABE-0011226-negative? Y|Y N|N</poll>

Negatively regulates transcription of genes for enzymes involved in the catabolism of D-gluconate via the Entner-Doudoroff pathway.

PMID:9537375[6]

cueR (b0487)

<poll>ABE-0001693-regulator? Y|Y N|N</poll>

<poll>ABE-0001693-positive? Y|Y N|N</poll>

<poll>ABE-0001693-negative? Y|Y N|N</poll>

bglG (b3723)

<poll>ABE-0012174-regulator? Y|Y N|N</poll>

<poll>ABE-0012174-positive? Y|Y N|N</poll>

<poll>ABE-0012174-negative? Y|Y N|N</poll>

flhD (b1892)

<poll>ABE-0006303-regulator? Y|Y N|N</poll>

<poll>ABE-0006303-positive? Y|Y N|N</poll>

<poll>ABE-0006303-negative? Y|Y N|N</poll>

aaeR (b3243)

<poll>ABE-0010639-regulator? Y|Y N|N</poll>

<poll>ABE-0010639-positive? Y|Y N|N</poll>

<poll>ABE-0010639-negative? Y|Y N|N</poll>

PMID:15489430[7] PMID:12011002[8]

abgR (b1339)

<poll>ABE-0004496-regulator? Y|Y N|N</poll>

<poll>ABE-0004496-positive? Y|Y N|N</poll>

<poll>ABE-0004496-negative? Y|Y N|N</poll>

PMID:17307853[9]

acrR (b0464)

<poll>ABE-0001608-regulator? Y|Y N|N</poll>

<poll>ABE-0001608-positive? Y|Y N|N</poll>

<poll>ABE-0001608-negative? Y|Y N|N</poll>

ada (b2213)

<poll>ABE-0007311-regulator? Y|Y N|N</poll>

<poll>ABE-0007311-positive? Y|Y N|N</poll>

<poll>ABE-0007311-negative? Y|Y N|N</poll>

adiY (b4116)

<poll>ABE-0013479-regulator? Y|Y N|N</poll>

<poll>ABE-0013479-positive? Y|Y N|N</poll>

<poll>ABE-0013479-negative? Y|Y N|N</poll>

greA (b3181)

<poll>ABE-0010454-regulator? Y|Y N|N</poll>

<poll>ABE-0010454-positive? Y|Y N|N</poll>

<poll>ABE-0010454-negative? Y|Y N|N</poll>

aer (b3072)

<poll>ABE-0010087-regulator? Y|Y N|N</poll>

<poll>ABE-0010087-positive? Y|Y N|N</poll>

<poll>ABE-0010087-negative? Y|Y N|N</poll>

greB (b3406)

<poll>ABE-0011117-regulator? Y|Y N|N</poll>

<poll>ABE-0011117-positive? Y|Y N|N</poll>

<poll>ABE-0011117-negative? Y|Y N|N</poll>

agaR (b3131)

<poll>ABE-0010291-regulator? Y|Y N|N</poll>

<poll>ABE-0010291-positive? Y|Y N|N</poll>

<poll>ABE-0010291-negative? Y|Y N|N</poll>

gutM (b2706)

<poll>ABE-0008898-regulator? Y|Y N|N</poll>

<poll>ABE-0008898-positive? Y|Y N|N</poll>

<poll>ABE-0008898-negative? Y|Y N|N</poll>

allR (b0506)

<poll>ABE-0001750-regulator? Y|Y N|N</poll>

<poll>ABE-0001750-positive? Y|Y N|N</poll>

<poll>ABE-0001750-negative? Y|Y N|N</poll>

alpA (b2624)

<poll>ABE-0008636-regulator? Y|Y N|N</poll>

<poll>ABE-0008636-positive? Y|Y N|N</poll>

<poll>ABE-0008636-negative? Y|Y N|N</poll>

appY (b0564)

<poll>ABE-0001929-regulator? Y|Y N|N</poll>

<poll>ABE-0001929-positive? Y|Y N|N</poll>

<poll>ABE-0001929-negative? Y|Y N|N</poll>

araC (b0064)

<poll>ABE-0000236-regulator? Y|Y N|N</poll>

<poll>ABE-0000236-positive? Y|Y N|N</poll>

<poll>ABE-0000236-negative? Y|Y N|N</poll>

arcA (b4401)

<poll>ABE-0014434-regulator? Y|Y N|N</poll>

<poll>ABE-0014434-positive? Y|Y N|N</poll>

<poll>ABE-0014434-negative? Y|Y N|N</poll>

represses genes in aerobic pathways and activates expression of genes in F

PMID:2964639[10], PMID:2565334[11]

arcB (b3210)

<poll>ABE-0010537-regulator? Y|Y N|N</poll>

<poll>ABE-0010537-positive? Y|Y N|N</poll>

<poll>ABE-0010537-negative? Y|Y N|N</poll>

hybrid sensory histidine protein kinase in two-component system with ArcA

PMID:2644240[12]

argR (b3237)

<poll>ABE-0010620-regulator? Y|Y N|N</poll>

<poll>ABE-0010620-positive? Y|Y N|N</poll>

<poll>ABE-0010620-negative? Y|Y N|N</poll>

arsR (b3501)

<poll>ABE-0011435-regulator? Y|Y N|N</poll>

<poll>ABE-0011435-positive? Y|Y N|N</poll>

<poll>ABE-0011435-negative? Y|Y N|N</poll>

ascG (b2714)

<poll>ABE-0008922-regulator? Y|Y N|N</poll>

<poll>ABE-0008922-positive? Y|Y N|N</poll>

<poll>ABE-0008922-negative? Y|Y N|N</poll>

asnC (b3743)

<poll>ABE-0012237-regulator? Y|Y N|N</poll>

<poll>ABE-0012237-positive? Y|Y N|N</poll>

<poll>ABE-0012237-negative? Y|Y N|N</poll>

atoC (b2220)

<poll>ABE-0007343-regulator? Y|Y N|N</poll>

<poll>ABE-0007343-positive? Y|Y N|N</poll>

<poll>ABE-0007343-negative? Y|Y N|N</poll>

baeR (b2079)

<poll>ABE-0006884-regulator? Y|Y N|N</poll>

<poll>ABE-0006884-positive? Y|Y N|N</poll>

<poll>ABE-0006884-negative? Y|Y N|N</poll>

barA (b2786)

<poll>ABE-0009131-regulator? Y|Y N|N</poll>

<poll>ABE-0009131-positive? Y|Y N|N</poll>

<poll>ABE-0009131-negative? Y|Y N|N</poll>

basR (b4113)

<poll>ABE-0013466-regulator? Y|Y N|N</poll>

<poll>ABE-0013466-positive? Y|Y N|N</poll>

<poll>ABE-0013466-negative? Y|Y N|N</poll>

bglJ (b4366)

<poll>ABE-0014324-regulator? Y|Y N|N</poll>

<poll>ABE-0014324-positive? Y|Y N|N</poll>

<poll>ABE-0014324-negative? Y|Y N|N</poll>

birA (b3973)

<poll>ABE-0013001-regulator? Y|Y N|N</poll>

<poll>ABE-0013001-positive? Y|Y N|N</poll>

<poll>ABE-0013001-negative? Y|Y N|N</poll>

bolA (b0435)

<poll>ABE-0001508-regulator? Y|Y N|N</poll>

<poll>ABE-0001508-positive? Y|Y N|N</poll>

<poll>ABE-0001508-negative? Y|Y N|N</poll>

cadC (b4133)

<poll>ABE-0013532-regulator? Y|Y N|N</poll>

<poll>ABE-0013532-positive? Y|Y N|N</poll>

<poll>ABE-0013532-negative? Y|Y N|N</poll>

caiF (b0034)

<poll>ABE-0000125-regulator? Y|Y N|N</poll>

<poll>ABE-0000125-positive? Y|Y N|N</poll>

<poll>ABE-0000125-negative? Y|Y N|N</poll>

cbl (b1987)

<poll>ABE-0006590-regulator? Y|Y N|N</poll>

<poll>ABE-0006590-positive? Y|Y N|N</poll>

<poll>ABE-0006590-negative? Y|Y N|N</poll>

PMID:8529872[13] PMID:14663078[14]

cdaR (b0162)

<poll>ABE-0000554-regulator? Y|Y N|N</poll>

<poll>ABE-0000554-positive? Y|Y N|N</poll>

<poll>ABE-0000554-negative? Y|Y N|N</poll>

celD (b1735)

<poll>ABE-0005790-regulator? Y|Y N|N</poll>

<poll>ABE-0005790-positive? Y|Y N|N</poll>

<poll>ABE-0005790-negative? Y|Y N|N</poll>

chaB (b1217)

<poll>ABE-0004087-regulator? Y|Y N|N</poll>

<poll>ABE-0004087-positive? Y|Y N|N</poll>

<poll>ABE-0004087-negative? Y|Y N|N</poll>

cheB (b1883)

<poll>ABE-0006284-regulator? Y|Y N|N</poll>

<poll>ABE-0006284-positive? Y|Y N|N</poll>

<poll>ABE-0006284-negative? Y|Y N|N</poll>

methyl esterase for chemoreceptors, involved in adaptation to attractants and repellents

cheY (b1882)

<poll>ABE-0006280-regulator? Y|Y N|N</poll>

<poll>ABE-0006280-positive? Y|Y N|N</poll>

<poll>ABE-0006280-negative? Y|Y N|N</poll>

citB (b0620)

<poll>ABE-0002131-regulator? Y|Y N|N</poll>

<poll>ABE-0002131-positive? Y|Y N|N</poll>

<poll>ABE-0002131-negative? Y|Y N|N</poll>

clpB (b2592)

<poll>ABE-0008527-regulator? Y|Y N|N</poll>

<poll>ABE-0008527-positive? Y|Y N|N</poll>

<poll>ABE-0008527-negative? Y|Y N|N</poll>

protein chaperone

PMID:10497158[15] PMID:10601016[16]

cpxR (b3912)

<poll>ABE-0012774-regulator? Y|Y N|N</poll>

<poll>ABE-0012774-positive? Y|Y N|N</poll>

<poll>ABE-0012774-negative? Y|Y N|N</poll>

creB (b4398)

<poll>ABE-0014428-regulator? Y|Y N|N</poll>

<poll>ABE-0014428-positive? Y|Y N|N</poll>

<poll>ABE-0014428-negative? Y|Y N|N</poll>

crp (b3357)

<poll>ABE-0010970-regulator? Y|Y N|N</poll>

<poll>ABE-0010970-positive? Y|Y N|N</poll>

<poll>ABE-0010970-negative? Y|Y N|N</poll>

csgD (b1040)

<poll>ABE-0003530-regulator? Y|Y N|N</poll>

<poll>ABE-0003530-positive? Y|Y N|N</poll>

<poll>ABE-0003530-negative? Y|Y N|N</poll>

cspA (b3556)

<poll>ABE-0011616-regulator? Y|Y N|N</poll>

<poll>ABE-0011616-positive? Y|Y N|N</poll>

<poll>ABE-0011616-negative? Y|Y N|N</poll>

cspB (b1557)

<poll>ABE-0005199-regulator? Y|Y N|N</poll>

<poll>ABE-0005199-positive? Y|Y N|N</poll>

<poll>ABE-0005199-negative? Y|Y N|N</poll>

cspC (b1823)

<poll>ABE-0006070-regulator? Y|Y N|N</poll>

<poll>ABE-0006070-positive? Y|Y N|N</poll>

<poll>ABE-0006070-negative? Y|Y N|N</poll>

cspD (b0880)

<poll>ABE-0002991-regulator? Y|Y N|N</poll>

<poll>ABE-0002991-positive? Y|Y N|N</poll>

<poll>ABE-0002991-negative? Y|Y N|N</poll>

cspE (b0623)

<poll>ABE-0002142-regulator? Y|Y N|N</poll>

<poll>ABE-0002142-positive? Y|Y N|N</poll>

<poll>ABE-0002142-negative? Y|Y N|N</poll>

cspF (b1558)

<poll>ABE-0005205-regulator? Y|Y N|N</poll>

<poll>ABE-0005205-positive? Y|Y N|N</poll>

<poll>ABE-0005205-negative? Y|Y N|N</poll>

cspG (b0990)

<poll>ABE-0003346-regulator? Y|Y N|N</poll>

<poll>ABE-0003346-positive? Y|Y N|N</poll>

<poll>ABE-0003346-negative? Y|Y N|N</poll>

cspH (b0989)

<poll>ABE-0003341-regulator? Y|Y N|N</poll>

<poll>ABE-0003341-positive? Y|Y N|N</poll>

<poll>ABE-0003341-negative? Y|Y N|N</poll>

cspI (b1552)

<poll>ABE-0005183-regulator? Y|Y N|N</poll>

<poll>ABE-0005183-positive? Y|Y N|N</poll>

<poll>ABE-0005183-negative? Y|Y N|N</poll>

cusR (b0571)

<poll>ABE-0001948-regulator? Y|Y N|N</poll>

<poll>ABE-0001948-positive? Y|Y N|N</poll>

<poll>ABE-0001948-negative? Y|Y N|N</poll>

cynR (b0338)

<poll>ABE-0001165-regulator? Y|Y N|N</poll>

<poll>ABE-0001165-positive? Y|Y N|N</poll>

<poll>ABE-0001165-negative? Y|Y N|N</poll>

PMID:7961413[17]

cysB (b1275)

<poll>ABE-0004279-regulator? Y|Y N|N</poll>

<poll>ABE-0004279-positive? Y|Y N|N</poll>

<poll>ABE-0004279-negative? Y|Y N|N</poll>

cytR (b3934)

<poll>ABE-0012853-regulator? Y|Y N|N</poll>

<poll>ABE-0012853-positive? Y|Y N|N</poll>

<poll>ABE-0012853-negative? Y|Y N|N</poll>

CytR represses the deoP2 promoter.

PMID:1655726[18]

dcuR (b4124)

<poll>ABE-0013507-regulator? Y|Y N|N</poll>

<poll>ABE-0013507-positive? Y|Y N|N</poll>

<poll>ABE-0013507-negative? Y|Y N|N</poll>

deaD (b3162)

<poll>ABE-0010392-regulator? Y|Y N|N</poll>

<poll>ABE-0010392-positive? Y|Y N|N</poll>

<poll>ABE-0010392-negative? Y|Y N|N</poll>

deoR (b0840)

<poll>ABE-0002862-regulator? Y|Y N|N</poll>

<poll>ABE-0002862-positive? Y|Y N|N</poll>

<poll>ABE-0002862-negative? Y|Y N|N</poll>

dgoR (b4479)

<poll>ABE-0174108-regulator? Y|Y N|N</poll>

<poll>ABE-0174108-positive? Y|Y N|N</poll>

<poll>ABE-0174108-negative? Y|Y N|N</poll>

dhaR (b1201)

<poll>ABE-0004033-regulator? Y|Y N|N</poll>

<poll>ABE-0004033-positive? Y|Y N|N</poll>

<poll>ABE-0004033-negative? Y|Y N|N</poll>

dicA (b1570)

<poll>ABE-0005248-regulator? Y|Y N|N</poll>

<poll>ABE-0005248-positive? Y|Y N|N</poll>

<poll>ABE-0005248-negative? Y|Y N|N</poll>

dicC (b1569)

<poll>ABE-0005244-regulator? Y|Y N|N</poll>

<poll>ABE-0005244-positive? Y|Y N|N</poll>

<poll>ABE-0005244-negative? Y|Y N|N</poll>

dos (b1489)

<poll>ABE-0004963-regulator? Y|Y N|N</poll>

<poll>ABE-0004963-positive? Y|Y N|N</poll>

<poll>ABE-0004963-negative? Y|Y N|N</poll>

dsdC (b2364)

<poll>ABE-0007797-regulator? Y|Y N|N</poll>

<poll>ABE-0007797-positive? Y|Y N|N</poll>

<poll>ABE-0007797-negative? Y|Y N|N</poll>

PMID:6090429[19]

ebgR (b3075)

<poll>ABE-0010099-regulator? Y|Y N|N</poll>

<poll>ABE-0010099-positive? Y|Y N|N</poll>

<poll>ABE-0010099-negative? Y|Y N|N</poll>

PMID:1107144[20]

emrR (b2684)

<poll>ABE-0008834-regulator? Y|Y N|N</poll>

<poll>ABE-0008834-positive? Y|Y N|N</poll>

<poll>ABE-0008834-negative? Y|Y N|N</poll>

envR (b3264)

<poll>ABE-0010712-regulator? Y|Y N|N</poll>

<poll>ABE-0010712-positive? Y|Y N|N</poll>

<poll>ABE-0010712-negative? Y|Y N|N</poll>

envY (b0566)

<poll>ABE-0001935-regulator? Y|Y N|N</poll>

<poll>ABE-0001935-positive? Y|Y N|N</poll>

<poll>ABE-0001935-negative? Y|Y N|N</poll>

evgA (b2369)

<poll>ABE-0007817-regulator? Y|Y N|N</poll>

<poll>ABE-0007817-positive? Y|Y N|N</poll>

<poll>ABE-0007817-negative? Y|Y N|N</poll>

evgS (b2370)

<poll>ABE-0007819-regulator? Y|Y N|N</poll>

<poll>ABE-0007819-positive? Y|Y N|N</poll>

<poll>ABE-0007819-negative? Y|Y N|N</poll>

exuR (b3094)

<poll>ABE-0010176-regulator? Y|Y N|N</poll>

<poll>ABE-0010176-positive? Y|Y N|N</poll>

<poll>ABE-0010176-negative? Y|Y N|N</poll>

fadR (b1187)

<poll>ABE-0003988-regulator? Y|Y N|N</poll>

<poll>ABE-0003988-positive? Y|Y N|N</poll>

<poll>ABE-0003988-negative? Y|Y N|N</poll>

farR (b0730)

<poll>ABE-0002487-regulator? Y|Y N|N</poll>

<poll>ABE-0002487-positive? Y|Y N|N</poll>

<poll>ABE-0002487-negative? Y|Y N|N</poll>

feaR (b1384)

<poll>ABE-0004630-regulator? Y|Y N|N</poll>

<poll>ABE-0004630-positive? Y|Y N|N</poll>

<poll>ABE-0004630-negative? Y|Y N|N</poll>

fecI (b4293)

<poll>ABE-0014072-regulator? Y|Y N|N</poll>

<poll>ABE-0014072-positive? Y|Y N|N</poll>

<poll>ABE-0014072-negative? Y|Y N|N</poll>

fhlA (b2731)

<poll>ABE-0008971-regulator? Y|Y N|N</poll>

<poll>ABE-0008971-positive? Y|Y N|N</poll>

<poll>ABE-0008971-negative? Y|Y N|N</poll>

fimB (b4312)

<poll>ABE-0014141-regulator? Y|Y N|N</poll>

<poll>ABE-0014141-positive? Y|Y N|N</poll>

<poll>ABE-0014141-negative? Y|Y N|N</poll>

fimE (b4313)

<poll>ABE-0014143-regulator? Y|Y N|N</poll>

<poll>ABE-0014143-positive? Y|Y N|N</poll>

<poll>ABE-0014143-negative? Y|Y N|N</poll>

fimZ (b0535)

<poll>ABE-0001836-regulator? Y|Y N|N</poll>

<poll>ABE-0001836-positive? Y|Y N|N</poll>

<poll>ABE-0001836-negative? Y|Y N|N</poll>

fis (b3261)

<poll>ABE-0010703-regulator? Y|Y N|N</poll>

<poll>ABE-0010703-positive? Y|Y N|N</poll>

<poll>ABE-0010703-negative? Y|Y N|N</poll>

flgM (b1071)

<poll>ABE-0003634-regulator? Y|Y N|N</poll>

<poll>ABE-0003634-positive? Y|Y N|N</poll>

<poll>ABE-0003634-negative? Y|Y N|N</poll>

flhC (b1891)

<poll>ABE-0006301-regulator? Y|Y N|N</poll>

<poll>ABE-0006301-positive? Y|Y N|N</poll>

<poll>ABE-0006301-negative? Y|Y N|N</poll>

fliA (b1922)

<poll>ABE-0006396-regulator? Y|Y N|N</poll>

<poll>ABE-0006396-positive? Y|Y N|N</poll>

<poll>ABE-0006396-negative? Y|Y N|N</poll>

PMID:7590326[21]

fnr (b1334)

<poll>ABE-0004475-regulator? Y|Y N|N</poll>

<poll>ABE-0004475-positive? Y|Y N|N</poll>

<poll>ABE-0004475-negative? Y|Y N|N</poll>

fruR (b0080)

<poll>ABE-0000299-regulator? Y|Y N|N</poll>

<poll>ABE-0000299-positive? Y|Y N|N</poll>

<poll>ABE-0000299-negative? Y|Y N|N</poll>

frvR (b3897)

<poll>ABE-0012720-regulator? Y|Y N|N</poll>

<poll>ABE-0012720-positive? Y|Y N|N</poll>

<poll>ABE-0012720-negative? Y|Y N|N</poll>

fucR (b2805)

<poll>ABE-0009195-regulator? Y|Y N|N</poll>

<poll>ABE-0009195-positive? Y|Y N|N</poll>

<poll>ABE-0009195-negative? Y|Y N|N</poll>

fur (b0683)

<poll>ABE-0002327-regulator? Y|Y N|N</poll>

<poll>ABE-0002327-positive? Y|Y N|N</poll>

<poll>ABE-0002327-negative? Y|Y N|N</poll>

galR (b2837)

<poll>ABE-0009307-regulator? Y|Y N|N</poll>

<poll>ABE-0009307-positive? Y|Y N|N</poll>

<poll>ABE-0009307-negative? Y|Y N|N</poll>

galS (b2151)

<poll>ABE-0007110-regulator? Y|Y N|N</poll>

<poll>ABE-0007110-positive? Y|Y N|N</poll>

<poll>ABE-0007110-negative? Y|Y N|N</poll>

gatR_1 (b2087)

<poll>ABE-0006914-regulator? Y|Y N|N</poll>

<poll>ABE-0006914-positive? Y|Y N|N</poll>

<poll>ABE-0006914-negative? Y|Y N|N</poll>

gatR_2 (b2090)

<poll>ABE-0006921-regulator? Y|Y N|N</poll>

<poll>ABE-0006921-positive? Y|Y N|N</poll>

<poll>ABE-0006921-negative? Y|Y N|N</poll>

gcvA (b2808)

<poll>ABE-0009202-regulator? Y|Y N|N</poll>

<poll>ABE-0009202-positive? Y|Y N|N</poll>

<poll>ABE-0009202-negative? Y|Y N|N</poll>

gcvR (b2479)

<poll>ABE-0008168-regulator? Y|Y N|N</poll>

<poll>ABE-0008168-positive? Y|Y N|N</poll>

<poll>ABE-0008168-negative? Y|Y N|N</poll>

glcC (b2980)

<poll>ABE-0009777-regulator? Y|Y N|N</poll>

<poll>ABE-0009777-positive? Y|Y N|N</poll>

<poll>ABE-0009777-negative? Y|Y N|N</poll>

glnB (b2553)

<poll>ABE-0008398-regulator? Y|Y N|N</poll>

<poll>ABE-0008398-positive? Y|Y N|N</poll>

<poll>ABE-0008398-negative? Y|Y N|N</poll>

glnG (b3868)

<poll>ABE-0012632-regulator? Y|Y N|N</poll>

<poll>ABE-0012632-positive? Y|Y N|N</poll>

<poll>ABE-0012632-negative? Y|Y N|N</poll>

glnK (b0450)

<poll>ABE-0001562-regulator? Y|Y N|N</poll>

<poll>ABE-0001562-positive? Y|Y N|N</poll>

<poll>ABE-0001562-negative? Y|Y N|N</poll>


edit table

</protect>

H-S

<protect>

Gene name (bnum) Is this a regulator Pos. regulator? Neg. regulator? Comments Evidence

racR (b1356)

<poll>ABE-0004548-regulator? Y|Y N|N</poll>

<poll>ABE-0004548-positive? Y|Y N|N</poll>

<poll>ABE-0004548-negative? Y|Y N|N</poll>

putA (b1014)

<poll>ABE-0003424-regulator? Y|Y N|N</poll>

<poll>ABE-0003424-positive? Y|Y N|N</poll>

<poll>ABE-0003424-negative? Y|Y N|N</poll>

PMID:15155740[22]

rbsR (b3753)

<poll>ABE-0012271-regulator? Y|Y N|N</poll>

<poll>ABE-0012271-positive? Y|Y N|N</poll>

<poll>ABE-0012271-negative? Y|Y N|N</poll>

hdfR (b4480)

<poll>ABE-0174109-regulator? Y|Y N|N</poll>

<poll>ABE-0174109-positive? Y|Y N|N</poll>

<poll>ABE-0174109-negative? Y|Y N|N</poll>

lexA (b4043)

<poll>ABE-0013241-regulator? Y|Y N|N</poll>

<poll>ABE-0013241-positive? Y|Y N|N</poll>

<poll>ABE-0013241-negative? Y|Y N|N</poll>

PMID:7027255[23] PMID:7027256[24]

metJ (b3938)

<poll>ABE-0012874-regulator? Y|Y N|N</poll>

<poll>ABE-0012874-positive? Y|Y N|N</poll>

<poll>ABE-0012874-negative? Y|Y N|N</poll>

malT (b3418)

<poll>ABE-0011162-regulator? Y|Y N|N</poll>

<poll>ABE-0011162-positive? Y|Y N|N</poll>

<poll>ABE-0011162-negative? Y|Y N|N</poll>

nanR (b3226)

<poll>ABE-0010584-regulator? Y|Y N|N</poll>

<poll>ABE-0010584-positive? Y|Y N|N</poll>

<poll>ABE-0010584-negative? Y|Y N|N</poll>

rhaR (b3906)

<poll>ABE-0012747-regulator? Y|Y N|N</poll>

<poll>ABE-0012747-positive? Y|Y N|N</poll>

<poll>ABE-0012747-negative? Y|Y N|N</poll>

rhaS (b3905)

<poll>ABE-0012745-regulator? Y|Y N|N</poll>

<poll>ABE-0012745-positive? Y|Y N|N</poll>

<poll>ABE-0012745-negative? Y|Y N|N</poll>

luxS (b2687)

<poll>ABE-0008842-regulator? Y|Y N|N</poll>

<poll>ABE-0008842-positive? Y|Y N|N</poll>

<poll>ABE-0008842-negative? Y|Y N|N</poll>

purR (b1658)

<poll>ABE-0005545-regulator? Y|Y N|N</poll>

<poll>ABE-0005545-positive? Y|Y N|N</poll>

<poll>ABE-0005545-negative? Y|Y N|N</poll>

PMID:3058704[25]

rcsA (b1951)

<poll>ABE-0006482-regulator? Y|Y N|N</poll>

<poll>ABE-0006482-positive? Y|Y N|N</poll>

<poll>ABE-0006482-negative? Y|Y N|N</poll>

hcaR (b2537)

<poll>ABE-0008351-regulator? Y|Y N|N</poll>

<poll>ABE-0008351-positive? Y|Y N|N</poll>

<poll>ABE-0008351-negative? Y|Y N|N</poll>

rcsB (b2217)

<poll>ABE-0007333-regulator? Y|Y N|N</poll>

<poll>ABE-0007333-positive? Y|Y N|N</poll>

<poll>ABE-0007333-negative? Y|Y N|N</poll>

hepA (b0059)

<poll>ABE-0000198-regulator? Y|Y N|N</poll>

<poll>ABE-0000198-positive? Y|Y N|N</poll>

<poll>ABE-0000198-negative? Y|Y N|N</poll>

rcsC (b2218)

<poll>ABE-0007336-regulator? Y|Y N|N</poll>

<poll>ABE-0007336-positive? Y|Y N|N</poll>

<poll>ABE-0007336-negative? Y|Y N|N</poll>

hfq (b4172)

<poll>ABE-0013659-regulator? Y|Y N|N</poll>

<poll>ABE-0013659-positive? Y|Y N|N</poll>

<poll>ABE-0013659-negative? Y|Y N|N</poll>

relB (b1564)

<poll>ABE-0005224-regulator? Y|Y N|N</poll>

<poll>ABE-0005224-positive? Y|Y N|N</poll>

<poll>ABE-0005224-negative? Y|Y N|N</poll>

himA (b1712)

<poll>ABE-0005715-regulator? Y|Y N|N</poll>

<poll>ABE-0005715-positive? Y|Y N|N</poll>

<poll>ABE-0005715-negative? Y|Y N|N</poll>

relE (b1563)

<poll>ABE-0005221-regulator? Y|Y N|N</poll>

<poll>ABE-0005221-positive? Y|Y N|N</poll>

<poll>ABE-0005221-negative? Y|Y N|N</poll>

himD (b0912)

<poll>ABE-0003107-regulator? Y|Y N|N</poll>

<poll>ABE-0003107-positive? Y|Y N|N</poll>

<poll>ABE-0003107-negative? Y|Y N|N</poll>

rfaH (b3842)

<poll>ABE-0012553-regulator? Y|Y N|N</poll>

<poll>ABE-0012553-positive? Y|Y N|N</poll>

<poll>ABE-0012553-negative? Y|Y N|N</poll>

hipB (b1508)

<poll>ABE-0005024-regulator? Y|Y N|N</poll>

<poll>ABE-0005024-positive? Y|Y N|N</poll>

<poll>ABE-0005024-negative? Y|Y N|N</poll>

rho (b3783)

<poll>ABE-0012362-regulator? Y|Y N|N</poll>

<poll>ABE-0012362-positive? Y|Y N|N</poll>

<poll>ABE-0012362-negative? Y|Y N|N</poll>

pin (b1158)

<poll>ABE-0003888-regulator? Y|Y N|N</poll>

<poll>ABE-0003888-positive? Y|Y N|N</poll>

<poll>ABE-0003888-negative? Y|Y N|N</poll>

rnk (b0610)

<poll>ABE-0002104-regulator? Y|Y N|N</poll>

<poll>ABE-0002104-positive? Y|Y N|N</poll>

<poll>ABE-0002104-negative? Y|Y N|N</poll>

hnr (b1235)

<poll>ABE-0004147-regulator? Y|Y N|N</poll>

<poll>ABE-0004147-positive? Y|Y N|N</poll>

<poll>ABE-0004147-negative? Y|Y N|N</poll>

rob (b4396)

<poll>ABE-0014420-regulator? Y|Y N|N</poll>

<poll>ABE-0014420-positive? Y|Y N|N</poll>

<poll>ABE-0014420-negative? Y|Y N|N</poll>

hns (b1237)

<poll>ABE-0004152-regulator? Y|Y N|N</poll>

<poll>ABE-0004152-positive? Y|Y N|N</poll>

<poll>ABE-0004152-negative? Y|Y N|N</poll>

rpiR (b4089)

<poll>ABE-0013400-regulator? Y|Y N|N</poll>

<poll>ABE-0013400-positive? Y|Y N|N</poll>

<poll>ABE-0013400-negative? Y|Y N|N</poll>

hycA (b2725)

<poll>ABE-0008952-regulator? Y|Y N|N</poll>

<poll>ABE-0008952-positive? Y|Y N|N</poll>

<poll>ABE-0008952-negative? Y|Y N|N</poll>

rplD (b3319)

<poll>ABE-0010858-regulator? Y|Y N|N</poll>

<poll>ABE-0010858-positive? Y|Y N|N</poll>

<poll>ABE-0010858-negative? Y|Y N|N</poll>

hyfR (b2491)

<poll>ABE-0008204-regulator? Y|Y N|N</poll>

<poll>ABE-0008204-positive? Y|Y N|N</poll>

<poll>ABE-0008204-negative? Y|Y N|N</poll>

rpoD (b3067)

<poll>ABE-0010070-regulator? Y|Y N|N</poll>

<poll>ABE-0010070-positive? Y|Y N|N</poll>

<poll>ABE-0010070-negative? Y|Y N|N</poll>

iciA (b2916)

<poll>ABE-0009574-regulator? Y|Y N|N</poll>

<poll>ABE-0009574-positive? Y|Y N|N</poll>

<poll>ABE-0009574-negative? Y|Y N|N</poll>

rpoE (b2573)

<poll>ABE-0008467-regulator? Y|Y N|N</poll>

<poll>ABE-0008467-positive? Y|Y N|N</poll>

<poll>ABE-0008467-negative? Y|Y N|N</poll>

iclR (b4018)

<poll>ABE-0013136-regulator? Y|Y N|N</poll>

<poll>ABE-0013136-positive? Y|Y N|N</poll>

<poll>ABE-0013136-negative? Y|Y N|N</poll>

rpoH (b3461)

<poll>ABE-0011303-regulator? Y|Y N|N</poll>

<poll>ABE-0011303-positive? Y|Y N|N</poll>

<poll>ABE-0011303-negative? Y|Y N|N</poll>

idnR (b4264)

<poll>ABE-0013966-regulator? Y|Y N|N</poll>

<poll>ABE-0013966-positive? Y|Y N|N</poll>

<poll>ABE-0013966-negative? Y|Y N|N</poll>

rpoN (b3202)

<poll>ABE-0010514-regulator? Y|Y N|N</poll>

<poll>ABE-0010514-positive? Y|Y N|N</poll>

<poll>ABE-0010514-negative? Y|Y N|N</poll>

ilvY (b3773)

<poll>ABE-0012323-regulator? Y|Y N|N</poll>

<poll>ABE-0012323-positive? Y|Y N|N</poll>

<poll>ABE-0012323-negative? Y|Y N|N</poll>

rpoS (b2741)

<poll>ABE-0009001-regulator? Y|Y N|N</poll>

<poll>ABE-0009001-positive? Y|Y N|N</poll>

<poll>ABE-0009001-negative? Y|Y N|N</poll>

iscR (b2531)

<poll>ABE-0008326-regulator? Y|Y N|N</poll>

<poll>ABE-0008326-positive? Y|Y N|N</poll>

<poll>ABE-0008326-negative? Y|Y N|N</poll>

rpsD (b3296)

<poll>ABE-0010805-regulator? Y|Y N|N</poll>

<poll>ABE-0010805-positive? Y|Y N|N</poll>

<poll>ABE-0010805-negative? Y|Y N|N</poll>

kdgR (b1827)

<poll>ABE-0006081-regulator? Y|Y N|N</poll>

<poll>ABE-0006081-positive? Y|Y N|N</poll>

<poll>ABE-0006081-negative? Y|Y N|N</poll>

rrmB (b3289)

<poll>ABE-0010785-regulator? Y|Y N|N</poll>

<poll>ABE-0010785-positive? Y|Y N|N</poll>

<poll>ABE-0010785-negative? Y|Y N|N</poll>

kdpE (b0694)

<poll>ABE-0002366-regulator? Y|Y N|N</poll>

<poll>ABE-0002366-positive? Y|Y N|N</poll>

<poll>ABE-0002366-negative? Y|Y N|N</poll>

rsd (b3995)

<poll>ABE-0013059-regulator? Y|Y N|N</poll>

<poll>ABE-0013059-positive? Y|Y N|N</poll>

<poll>ABE-0013059-negative? Y|Y N|N</poll>

lacI (b0345)

<poll>ABE-0001189-regulator? Y|Y N|N</poll>

<poll>ABE-0001189-positive? Y|Y N|N</poll>

<poll>ABE-0001189-negative? Y|Y N|N</poll>

rstA (b1608)

<poll>ABE-0005370-regulator? Y|Y N|N</poll>

<poll>ABE-0005370-positive? Y|Y N|N</poll>

<poll>ABE-0005370-negative? Y|Y N|N</poll>

leuO (b0076)

<poll>ABE-0000280-regulator? Y|Y N|N</poll>

<poll>ABE-0000280-positive? Y|Y N|N</poll>

<poll>ABE-0000280-negative? Y|Y N|N</poll>

rtcR (b3422)

<poll>ABE-0011174-regulator? Y|Y N|N</poll>

<poll>ABE-0011174-positive? Y|Y N|N</poll>

<poll>ABE-0011174-negative? Y|Y N|N</poll>

lldR (b3604)

<poll>ABE-0011782-regulator? Y|Y N|N</poll>

<poll>ABE-0011782-positive? Y|Y N|N</poll>

<poll>ABE-0011782-negative? Y|Y N|N</poll>

sdiA (b1916)

<poll>ABE-0006381-regulator? Y|Y N|N</poll>

<poll>ABE-0006381-positive? Y|Y N|N</poll>

<poll>ABE-0006381-negative? Y|Y N|N</poll>

lrhA (b2289)

<poll>ABE-0007555-regulator? Y|Y N|N</poll>

<poll>ABE-0007555-positive? Y|Y N|N</poll>

<poll>ABE-0007555-negative? Y|Y N|N</poll>

sgcR (b4300)

<poll>ABE-0014094-regulator? Y|Y N|N</poll>

<poll>ABE-0014094-positive? Y|Y N|N</poll>

<poll>ABE-0014094-negative? Y|Y N|N</poll>

lrp (b0889)

<poll>ABE-0003023-regulator? Y|Y N|N</poll>

<poll>ABE-0003023-positive? Y|Y N|N</poll>

<poll>ABE-0003023-negative? Y|Y N|N</poll>

slyA (b1642)

<poll>ABE-0005495-regulator? Y|Y N|N</poll>

<poll>ABE-0005495-positive? Y|Y N|N</poll>

<poll>ABE-0005495-negative? Y|Y N|N</poll>

lsrR (b1512)

<poll>ABE-0005045-regulator? Y|Y N|N</poll>

<poll>ABE-0005045-positive? Y|Y N|N</poll>

<poll>ABE-0005045-negative? Y|Y N|N</poll>

soxR (b4063)

<poll>ABE-0013316-regulator? Y|Y N|N</poll>

<poll>ABE-0013316-positive? Y|Y N|N</poll>

<poll>ABE-0013316-negative? Y|Y N|N</poll>

lysR (b2839)

<poll>ABE-0009313-regulator? Y|Y N|N</poll>

<poll>ABE-0009313-positive? Y|Y N|N</poll>

<poll>ABE-0009313-negative? Y|Y N|N</poll>

soxS (b4062)

<poll>ABE-0013311-regulator? Y|Y N|N</poll>

<poll>ABE-0013311-positive? Y|Y N|N</poll>

<poll>ABE-0013311-negative? Y|Y N|N</poll>

malI (b1620)

<poll>ABE-0005421-regulator? Y|Y N|N</poll>

<poll>ABE-0005421-positive? Y|Y N|N</poll>

<poll>ABE-0005421-negative? Y|Y N|N</poll>

srlR (b2707)

<poll>ABE-0008900-regulator? Y|Y N|N</poll>

<poll>ABE-0008900-positive? Y|Y N|N</poll>

<poll>ABE-0008900-negative? Y|Y N|N</poll>

malY (b1622)

<poll>ABE-0005432-regulator? Y|Y N|N</poll>

<poll>ABE-0005432-positive? Y|Y N|N</poll>

<poll>ABE-0005432-negative? Y|Y N|N</poll>

stpA (b2669)

<poll>ABE-0008788-regulator? Y|Y N|N</poll>

<poll>ABE-0008788-positive? Y|Y N|N</poll>

<poll>ABE-0008788-negative? Y|Y N|N</poll>

marA (b1531)

<poll>ABE-0005112-regulator? Y|Y N|N</poll>

<poll>ABE-0005112-positive? Y|Y N|N</poll>

<poll>ABE-0005112-negative? Y|Y N|N</poll>

marR (b1530)

<poll>ABE-0005110-regulator? Y|Y N|N</poll>

<poll>ABE-0005110-positive? Y|Y N|N</poll>

<poll>ABE-0005110-negative? Y|Y N|N</poll>

melR (b4118)

<poll>ABE-0013486-regulator? Y|Y N|N</poll>

<poll>ABE-0013486-positive? Y|Y N|N</poll>

<poll>ABE-0013486-negative? Y|Y N|N</poll>

metR (b3828)

<poll>ABE-0012506-regulator? Y|Y N|N</poll>

<poll>ABE-0012506-positive? Y|Y N|N</poll>

<poll>ABE-0012506-negative? Y|Y N|N</poll>

mhpR (b0346)

<poll>ABE-0001191-regulator? Y|Y N|N</poll>

<poll>ABE-0001191-positive? Y|Y N|N</poll>

<poll>ABE-0001191-negative? Y|Y N|N</poll>

mlc (b1594)

<poll>ABE-0005323-regulator? Y|Y N|N</poll>

<poll>ABE-0005323-positive? Y|Y N|N</poll>

<poll>ABE-0005323-negative? Y|Y N|N</poll>

mntR (b0817)

<poll>ABE-0002793-regulator? Y|Y N|N</poll>

<poll>ABE-0002793-positive? Y|Y N|N</poll>

<poll>ABE-0002793-negative? Y|Y N|N</poll>

modE (b0761)

<poll>ABE-0002585-regulator? Y|Y N|N</poll>

<poll>ABE-0002585-positive? Y|Y N|N</poll>

<poll>ABE-0002585-negative? Y|Y N|N</poll>

mtlR (b3601)

<poll>ABE-0011769-regulator? Y|Y N|N</poll>

<poll>ABE-0011769-positive? Y|Y N|N</poll>

<poll>ABE-0011769-negative? Y|Y N|N</poll>

nac (b1988)

<poll>ABE-0006594-regulator? Y|Y N|N</poll>

<poll>ABE-0006594-positive? Y|Y N|N</poll>

<poll>ABE-0006594-negative? Y|Y N|N</poll>

nadR (b4390)

<poll>ABE-0014397-regulator? Y|Y N|N</poll>

<poll>ABE-0014397-positive? Y|Y N|N</poll>

<poll>ABE-0014397-negative? Y|Y N|N</poll>

nagC (b0676)

<poll>ABE-0002299-regulator? Y|Y N|N</poll>

<poll>ABE-0002299-positive? Y|Y N|N</poll>

<poll>ABE-0002299-negative? Y|Y N|N</poll>

narL (b1221)

<poll>ABE-0004097-regulator? Y|Y N|N</poll>

<poll>ABE-0004097-positive? Y|Y N|N</poll>

<poll>ABE-0004097-negative? Y|Y N|N</poll>

narP (b2193)

<poll>ABE-0007259-regulator? Y|Y N|N</poll>

<poll>ABE-0007259-positive? Y|Y N|N</poll>

<poll>ABE-0007259-negative? Y|Y N|N</poll>

nhaR (b0020)

<poll>ABE-0000072-regulator? Y|Y N|N</poll>

<poll>ABE-0000072-positive? Y|Y N|N</poll>

<poll>ABE-0000072-negative? Y|Y N|N</poll>

nikR (b3481)

<poll>ABE-0011366-regulator? Y|Y N|N</poll>

<poll>ABE-0011366-positive? Y|Y N|N</poll>

<poll>ABE-0011366-negative? Y|Y N|N</poll>

nlp (b3188)

<poll>ABE-0010477-regulator? Y|Y N|N</poll>

<poll>ABE-0010477-positive? Y|Y N|N</poll>

<poll>ABE-0010477-negative? Y|Y N|N</poll>

A predicted txn factor based on amino acid sequence similarity to the family of Lambda repressor-like, DNA-binding proteins (IPR010982). It's biological function is not clear. When present in multicopy, nlp (aka sfsB) allows a ∆cya crp*1 strain, but not a ∆cya crp+ strain, to ferment maltose [26]. A total of 12 genes with this phenotype were isolated [27].

nusA (b3169)

<poll>ABE-0010413-regulator? Y|Y N|N</poll>

<poll>ABE-0010413-positive? Y|Y N|N</poll>

<poll>ABE-0010413-negative? Y|Y N|N</poll>

nusB (b0416)

<poll>ABE-0001447-regulator? Y|Y N|N</poll>

<poll>ABE-0001447-positive? Y|Y N|N</poll>

<poll>ABE-0001447-negative? Y|Y N|N</poll>

nusG (b3982)

<poll>ABE-0013026-regulator? Y|Y N|N</poll>

<poll>ABE-0013026-positive? Y|Y N|N</poll>

<poll>ABE-0013026-negative? Y|Y N|N</poll>

ogrK (b2082)

<poll>ABE-0006893-regulator? Y|Y N|N</poll>

<poll>ABE-0006893-positive? Y|Y N|N</poll>

<poll>ABE-0006893-negative? Y|Y N|N</poll>

ompR (b3405)

<poll>ABE-0011110-regulator? Y|Y N|N</poll>

<poll>ABE-0011110-positive? Y|Y N|N</poll>

<poll>ABE-0011110-negative? Y|Y N|N</poll>

oxyR (b3961)

<poll>ABE-0012973-regulator? Y|Y N|N</poll>

<poll>ABE-0012973-positive? Y|Y N|N</poll>

<poll>ABE-0012973-negative? Y|Y N|N</poll>

paaX (b1399)

<poll>ABE-0004674-regulator? Y|Y N|N</poll>

<poll>ABE-0004674-positive? Y|Y N|N</poll>

<poll>ABE-0004674-negative? Y|Y N|N</poll>

pdhR (b0113)

<poll>ABE-0000394-regulator? Y|Y N|N</poll>

<poll>ABE-0000394-positive? Y|Y N|N</poll>

<poll>ABE-0000394-negative? Y|Y N|N</poll>

perR (b0254)

<poll>ABE-0000862-regulator? Y|Y N|N</poll>

<poll>ABE-0000862-positive? Y|Y N|N</poll>

<poll>ABE-0000862-negative? Y|Y N|N</poll>

phnF (b4102)

<poll>ABE-0013435-regulator? Y|Y N|N</poll>

<poll>ABE-0013435-positive? Y|Y N|N</poll>

<poll>ABE-0013435-negative? Y|Y N|N</poll>

phoB (b0399)

<poll>ABE-0001389-regulator? Y|Y N|N</poll>

<poll>ABE-0001389-positive? Y|Y N|N</poll>

<poll>ABE-0001389-negative? Y|Y N|N</poll>

phoP (b1130)

<poll>ABE-0003807-regulator? Y|Y N|N</poll>

<poll>ABE-0003807-positive? Y|Y N|N</poll>

<poll>ABE-0003807-negative? Y|Y N|N</poll>

prpR (b0330)

<poll>ABE-0001133-regulator? Y|Y N|N</poll>

<poll>ABE-0001133-positive? Y|Y N|N</poll>

<poll>ABE-0001133-negative? Y|Y N|N</poll>

pspC (b1306)

<poll>ABE-0004391-regulator? Y|Y N|N</poll>

<poll>ABE-0004391-positive? Y|Y N|N</poll>

<poll>ABE-0004391-negative? Y|Y N|N</poll>

pspF (b1303)

<poll>ABE-0004383-regulator? Y|Y N|N</poll>

<poll>ABE-0004383-positive? Y|Y N|N</poll>

<poll>ABE-0004383-negative? Y|Y N|N</poll>

qseB (b3025)

<poll>ABE-0009936-regulator? Y|Y N|N</poll>

<poll>ABE-0009936-positive? Y|Y N|N</poll>

<poll>ABE-0009936-negative? Y|Y N|N</poll>

pcnB (b0143)

<poll>ABE-0000493-regulator? Y|Y N|N</poll>

<poll>ABE-0000493-positive? Y|Y N|N</poll>

<poll>ABE-0000493-negative? Y|Y N|N</poll>

poly(A) polymerase I

PMID:1438224[28]

rpoA (b3295)

<poll>ABE-0010802-regulator? Y|Y N|N</poll>

<poll>ABE-0010802-positive? Y|Y N|N</poll>

<poll>ABE-0010802-negative? Y|Y N|N</poll>

rpoB (b3987)

<poll>ABE-0013041-regulator? Y|Y N|N</poll>

<poll>ABE-0013041-positive? Y|Y N|N</poll>

<poll>ABE-0013041-negative? Y|Y N|N</poll>

rpoC (b3988)

<poll>ABE-0013043-regulator? Y|Y N|N</poll>

<poll>ABE-0013043-positive? Y|Y N|N</poll>

<poll>ABE-0013043-negative? Y|Y N|N</poll>

rpoZ (b3649)

<poll>ABE-0011933-regulator? Y|Y N|N</poll>

<poll>ABE-0011933-positive? Y|Y N|N</poll>

<poll>ABE-0011933-negative? Y|Y N|N</poll>

rcnR (b2105)

<poll>ABE-0006964-regulator?rnY|YrnN|N</poll>

<poll>ABE-0006964-positive?rnY|YrnN|N</poll>

<poll>ABE-0006964-negative?rnY|YrnN|N</poll>

Formerly yohL

PMID:16956381[29]

edit table

</protect>

T-Z

<protect>

Gene name (bnum) Is this a regulator Pos. regulator? Neg. regulator? Comments Evidence

treR (b4241)

<poll>ABE-0013875-regulator? Y|Y N|N</poll>

<poll>ABE-0013875-positive? Y|Y N|N</poll>

<poll>ABE-0013875-negative? Y|Y N|N</poll>

PMID:9148912[30]

wrbA (b1004)

<poll>ABE-0003392-regulator? Y|Y N|N</poll>

<poll>ABE-0003392-positive? Y|Y N|N</poll>

<poll>ABE-0003392-negative? Y|Y N|N</poll>

WrbA binds to TrpR, but doesn't affect affinity of TrpR for it's operator site.

PMID:9694845[31]

ycdC (b1013)

<poll>ABE-0003422-regulator? Y|Y N|N</poll>

<poll>ABE-0003422-positive? Y|Y N|N</poll>

<poll>ABE-0003422-negative? Y|Y N|N</poll>

trpR (b4393)

<poll>ABE-0014408-regulator? Y|Y N|N</poll>

<poll>ABE-0014408-positive? Y|Y N|N</poll>

<poll>ABE-0014408-negative? Y|Y N|N</poll>

yjfQ (b4191)

<poll>ABE-0013713-regulator? Y|Y N|N</poll>

<poll>ABE-0013713-positive? Y|Y N|N</poll>

<poll>ABE-0013713-negative? Y|Y N|N</poll>

umuD (b1183)

<poll>ABE-0003974-regulator? Y|Y N|N</poll>

<poll>ABE-0003974-positive? Y|Y N|N</poll>

<poll>ABE-0003974-negative? Y|Y N|N</poll>

ygaV (b2667)

<poll>ABE-0008784-regulator? Y|Y N|N</poll>

<poll>ABE-0008784-positive? Y|Y N|N</poll>

<poll>ABE-0008784-negative? Y|Y N|N</poll>

ygeK (b2856)

<poll>ABE-0009381-regulator? Y|Y N|N</poll>

<poll>ABE-0009381-positive? Y|Y N|N</poll>

<poll>ABE-0009381-negative? Y|Y N|N</poll>

tdcA (b3118)

<poll>ABE-0010252-regulator? Y|Y N|N</poll>

<poll>ABE-0010252-positive? Y|Y N|N</poll>

<poll>ABE-0010252-negative? Y|Y N|N</poll>

PMID:8413189[32]

tdcR (b3119)

<poll>ABE-0010255-regulator? Y|Y N|N</poll>

<poll>ABE-0010255-positive? Y|Y N|N</poll>

<poll>ABE-0010255-negative? Y|Y N|N</poll>

torR (b0995)

<poll>ABE-0003362-regulator? Y|Y N|N</poll>

<poll>ABE-0003362-positive? Y|Y N|N</poll>

<poll>ABE-0003362-negative? Y|Y N|N</poll>

torS (b0993)

<poll>ABE-0003354-regulator? Y|Y N|N</poll>

<poll>ABE-0003354-positive? Y|Y N|N</poll>

<poll>ABE-0003354-negative? Y|Y N|N</poll>

ttk (b3641)

<poll>ABE-0011902-regulator? Y|Y N|N</poll>

<poll>ABE-0011902-positive? Y|Y N|N</poll>

<poll>ABE-0011902-negative? Y|Y N|N</poll>

tyrR (b1323)

<poll>ABE-0004440-regulator? Y|Y N|N</poll>

<poll>ABE-0004440-positive? Y|Y N|N</poll>

<poll>ABE-0004440-negative? Y|Y N|N</poll>

uhpA (b3669)

<poll>ABE-0011995-regulator? Y|Y N|N</poll>

<poll>ABE-0011995-positive? Y|Y N|N</poll>

<poll>ABE-0011995-negative? Y|Y N|N</poll>

uidR (b1618)

<poll>ABE-0005415-regulator? Y|Y N|N</poll>

<poll>ABE-0005415-positive? Y|Y N|N</poll>

<poll>ABE-0005415-negative? Y|Y N|N</poll>

uvrY (b1914)

<poll>ABE-0006373-regulator? Y|Y N|N</poll>

<poll>ABE-0006373-positive? Y|Y N|N</poll>

<poll>ABE-0006373-negative? Y|Y N|N</poll>

uxuR (b4324)

<poll>ABE-0014179-regulator? Y|Y N|N</poll>

<poll>ABE-0014179-positive? Y|Y N|N</poll>

<poll>ABE-0014179-negative? Y|Y N|N</poll>

xapR (b2405)

<poll>ABE-0007922-regulator? Y|Y N|N</poll>

<poll>ABE-0007922-positive? Y|Y N|N</poll>

<poll>ABE-0007922-negative? Y|Y N|N</poll>

PMID:7559336[33]

xylR (b3569)

<poll>ABE-0011652-regulator? Y|Y N|N</poll>

<poll>ABE-0011652-positive? Y|Y N|N</poll>

<poll>ABE-0011652-negative? Y|Y N|N</poll>

yafC (b0208)

<poll>ABE-0000694-regulator? Y|Y N|N</poll>

<poll>ABE-0000694-positive? Y|Y N|N</poll>

<poll>ABE-0000694-negative? Y|Y N|N</poll>

yafY (b0251)

<poll>ABE-0000853-regulator? Y|Y N|N</poll>

<poll>ABE-0000853-positive? Y|Y N|N</poll>

<poll>ABE-0000853-negative? Y|Y N|N</poll>

yagI (b0272)

<poll>ABE-0000933-regulator? Y|Y N|N</poll>

<poll>ABE-0000933-positive? Y|Y N|N</poll>

<poll>ABE-0000933-negative? Y|Y N|N</poll>

yahA (b0315)

<poll>ABE-0001086-regulator? Y|Y N|N</poll>

<poll>ABE-0001086-positive? Y|Y N|N</poll>

<poll>ABE-0001086-negative? Y|Y N|N</poll>

yahB (b0316)

<poll>ABE-0001088-regulator? Y|Y N|N</poll>

<poll>ABE-0001088-positive? Y|Y N|N</poll>

<poll>ABE-0001088-negative? Y|Y N|N</poll>

Hypothetical LysR-Type Transcriptional Regulator based on COGs

ybaD (b0413)

<poll>ABE-0001437-regulator? Y|Y N|N</poll>

<poll>ABE-0001437-positive? Y|Y N|N</poll>

<poll>ABE-0001437-negative? Y|Y N|N</poll>

ybaK (b0481)

<poll>ABE-0001670-regulator? Y|Y N|N</poll>

<poll>ABE-0001670-positive? Y|Y N|N</poll>

<poll>ABE-0001670-negative? Y|Y N|N</poll>

ybaO (b0447)

<poll>ABE-0001553-regulator? Y|Y N|N</poll>

<poll>ABE-0001553-positive? Y|Y N|N</poll>

<poll>ABE-0001553-negative? Y|Y N|N</poll>

ybaQ (b0483)

<poll>ABE-0001677-regulator? Y|Y N|N</poll>

<poll>ABE-0001677-positive? Y|Y N|N</poll>

<poll>ABE-0001677-negative? Y|Y N|N</poll>

ybbS (b0504)

<poll>ABE-0001742-regulator? Y|Y N|N</poll>

<poll>ABE-0001742-positive? Y|Y N|N</poll>

<poll>ABE-0001742-negative? Y|Y N|N</poll>

ybcM (b0546)

<poll>ABE-0001871-regulator? Y|Y N|N</poll>

<poll>ABE-0001871-positive? Y|Y N|N</poll>

<poll>ABE-0001871-negative? Y|Y N|N</poll>

ybcQ (b0551)

<poll>ABE-0001883-regulator? Y|Y N|N</poll>

<poll>ABE-0001883-positive? Y|Y N|N</poll>

<poll>ABE-0001883-negative? Y|Y N|N</poll>

ybdO (b0603)

<poll>ABE-0002077-regulator? Y|Y N|N</poll>

<poll>ABE-0002077-positive? Y|Y N|N</poll>

<poll>ABE-0002077-negative? Y|Y N|N</poll>

ybeF (b0629)

<poll>ABE-0002158-regulator? Y|Y N|N</poll>

<poll>ABE-0002158-positive? Y|Y N|N</poll>

<poll>ABE-0002158-negative? Y|Y N|N</poll>

ybhD (b0768)

<poll>ABE-0002613-regulator? Y|Y N|N</poll>

<poll>ABE-0002613-positive? Y|Y N|N</poll>

<poll>ABE-0002613-negative? Y|Y N|N</poll>

ybiH (b0796)

<poll>ABE-0002711-regulator? Y|Y N|N</poll>

<poll>ABE-0002711-positive? Y|Y N|N</poll>

<poll>ABE-0002711-negative? Y|Y N|N</poll>

ybjK (b0846)

<poll>ABE-0002885-regulator? Y|Y N|N</poll>

<poll>ABE-0002885-positive? Y|Y N|N</poll>

<poll>ABE-0002885-negative? Y|Y N|N</poll>

ycaN (b0900)

<poll>ABE-0003060-regulator? Y|Y N|N</poll>

<poll>ABE-0003060-positive? Y|Y N|N</poll>

<poll>ABE-0003060-negative? Y|Y N|N</poll>

Hypothetical LysR-Type Transcriptional Regulator based on COGs

ycfQ (b1111)

<poll>ABE-0003754-regulator? Y|Y N|N</poll>

<poll>ABE-0003754-positive? Y|Y N|N</poll>

<poll>ABE-0003754-negative? Y|Y N|N</poll>

ycgE (b1162)

<poll>ABE-0003900-regulator? Y|Y N|N</poll>

<poll>ABE-0003900-positive? Y|Y N|N</poll>

<poll>ABE-0003900-negative? Y|Y N|N</poll>

yciT (b1284)

<poll>ABE-0004312-regulator? Y|Y N|N</poll>

<poll>ABE-0004312-positive? Y|Y N|N</poll>

<poll>ABE-0004312-negative? Y|Y N|N</poll>

ycjC (b1299)

<poll>ABE-0004371-regulator? Y|Y N|N</poll>

<poll>ABE-0004371-positive? Y|Y N|N</poll>

<poll>ABE-0004371-negative? Y|Y N|N</poll>

ycjW (b1320)

<poll>ABE-0004428-regulator? Y|Y N|N</poll>

<poll>ABE-0004428-positive? Y|Y N|N</poll>

<poll>ABE-0004428-negative? Y|Y N|N</poll>

ycjZ (b1328)

<poll>ABE-0004457-regulator? Y|Y N|N</poll>

<poll>ABE-0004457-positive? Y|Y N|N</poll>

<poll>ABE-0004457-negative? Y|Y N|N</poll>

Hypothetical LysR-Type Transcriptional Regulator based on COGs

ydaM (b1341)

<poll>ABE-0004504-regulator? Y|Y N|N</poll>

<poll>ABE-0004504-positive? Y|Y N|N</poll>

<poll>ABE-0004504-negative? Y|Y N|N</poll>

ydcI (b1422)

<poll>ABE-0004746-regulator? Y|Y N|N</poll>

<poll>ABE-0004746-positive? Y|Y N|N</poll>

<poll>ABE-0004746-negative? Y|Y N|N</poll>

Hypothetical LysR-Type Transcriptional Regulator based on COGs

ydcN (b1434)

<poll>ABE-0004783-regulator? Y|Y N|N</poll>

<poll>ABE-0004783-positive? Y|Y N|N</poll>

<poll>ABE-0004783-negative? Y|Y N|N</poll>

ydcQ (b1438)

<poll>ABE-0004796-regulator? Y|Y N|N</poll>

<poll>ABE-0004796-positive? Y|Y N|N</poll>

<poll>ABE-0004796-negative? Y|Y N|N</poll>

ydcR (b1439)

<poll>ABE-0004800-regulator? Y|Y N|N</poll>

<poll>ABE-0004800-positive? Y|Y N|N</poll>

<poll>ABE-0004800-negative? Y|Y N|N</poll>

yddM (b1477)

<poll>ABE-0004925-regulator? Y|Y N|N</poll>

<poll>ABE-0004925-positive? Y|Y N|N</poll>

<poll>ABE-0004925-negative? Y|Y N|N</poll>

ydeO (b1499)

<poll>ABE-0004992-regulator? Y|Y N|N</poll>

<poll>ABE-0004992-positive? Y|Y N|N</poll>

<poll>ABE-0004992-negative? Y|Y N|N</poll>

ydfH (b1540)

<poll>ABE-0005144-regulator? Y|Y N|N</poll>

<poll>ABE-0005144-positive? Y|Y N|N</poll>

<poll>ABE-0005144-negative? Y|Y N|N</poll>

ydfT (b1559)

<poll>ABE-0005207-regulator? Y|Y N|N</poll>

<poll>ABE-0005207-positive? Y|Y N|N</poll>

<poll>ABE-0005207-negative? Y|Y N|N</poll>

ydhB (b1659)

<poll>ABE-0005547-regulator? Y|Y N|N</poll>

<poll>ABE-0005547-positive? Y|Y N|N</poll>

<poll>ABE-0005547-negative? Y|Y N|N</poll>

Hypothetical LysR-Type Transcriptional Regulator based on COGs

ydhM (b1649)

<poll>ABE-0005514-regulator? Y|Y N|N</poll>

<poll>ABE-0005514-positive? Y|Y N|N</poll>

<poll>ABE-0005514-negative? Y|Y N|N</poll>

ydiP (b1696)

<poll>ABE-0005660-regulator? Y|Y N|N</poll>

<poll>ABE-0005660-positive? Y|Y N|N</poll>

<poll>ABE-0005660-negative? Y|Y N|N</poll>

ydjF (b1770)

<poll>ABE-0005897-regulator? Y|Y N|N</poll>

<poll>ABE-0005897-positive? Y|Y N|N</poll>

<poll>ABE-0005897-negative? Y|Y N|N</poll>

yeaM (b1790)

<poll>ABE-0005956-regulator? Y|Y N|N</poll>

<poll>ABE-0005956-positive? Y|Y N|N</poll>

<poll>ABE-0005956-negative? Y|Y N|N</poll>

yeaT (b1799)

<poll>ABE-0005987-regulator? Y|Y N|N</poll>

<poll>ABE-0005987-positive? Y|Y N|N</poll>

<poll>ABE-0005987-negative? Y|Y N|N</poll>

Hypothetical LysR-Type Transcriptional Regulator based on COGs

yebK (b1853)

<poll>ABE-0006179-regulator? Y|Y N|N</poll>

<poll>ABE-0006179-positive? Y|Y N|N</poll>

<poll>ABE-0006179-negative? Y|Y N|N</poll>

yedW (b1969)

<poll>ABE-0006533-regulator? Y|Y N|N</poll>

<poll>ABE-0006533-positive? Y|Y N|N</poll>

<poll>ABE-0006533-negative? Y|Y N|N</poll>

yeeY (b2015)

<poll>ABE-0006700-regulator? Y|Y N|N</poll>

<poll>ABE-0006700-positive? Y|Y N|N</poll>

<poll>ABE-0006700-negative? Y|Y N|N</poll>

yegE (b2067)

<poll>ABE-0006845-regulator? Y|Y N|N</poll>

<poll>ABE-0006845-positive? Y|Y N|N</poll>

<poll>ABE-0006845-negative? Y|Y N|N</poll>

yegW (b2101)

<poll>ABE-0006952-regulator? Y|Y N|N</poll>

<poll>ABE-0006952-positive? Y|Y N|N</poll>

<poll>ABE-0006952-negative? Y|Y N|N</poll>

yehT (b2125)

<poll>ABE-0007023-regulator? Y|Y N|N</poll>

<poll>ABE-0007023-positive? Y|Y N|N</poll>

<poll>ABE-0007023-negative? Y|Y N|N</poll>

yehV (b2127)

<poll>ABE-0007030-regulator? Y|Y N|N</poll>

<poll>ABE-0007030-positive? Y|Y N|N</poll>

<poll>ABE-0007030-negative? Y|Y N|N</poll>

yeiE (b2157)

<poll>ABE-0007138-regulator? Y|Y N|N</poll>

<poll>ABE-0007138-positive? Y|Y N|N</poll>

<poll>ABE-0007138-negative? Y|Y N|N</poll>

PMID:1240070[34]

yeiL (b2163)

<poll>ABE-0007160-regulator? Y|Y N|N</poll>

<poll>ABE-0007160-positive? Y|Y N|N</poll>

<poll>ABE-0007160-negative? Y|Y N|N</poll>

yfaX (b2248)

<poll>ABE-0007438-regulator? Y|Y N|N</poll>

<poll>ABE-0007438-positive? Y|Y N|N</poll>

<poll>ABE-0007438-negative? Y|Y N|N</poll>

yfeG (b2437)

<poll>ABE-0008036-regulator? Y|Y N|N</poll>

<poll>ABE-0008036-positive? Y|Y N|N</poll>

<poll>ABE-0008036-negative? Y|Y N|N</poll>

yfeR (b2409)

<poll>ABE-0007932-regulator? Y|Y N|N</poll>

<poll>ABE-0007932-positive? Y|Y N|N</poll>

<poll>ABE-0007932-negative? Y|Y N|N</poll>

yfeT (b2427)

<poll>ABE-0008000-regulator? Y|Y N|N</poll>

<poll>ABE-0008000-positive? Y|Y N|N</poll>

<poll>ABE-0008000-negative? Y|Y N|N</poll>

yfgA (b2516)

<poll>ABE-0008283-regulator? Y|Y N|N</poll>

<poll>ABE-0008283-positive? Y|Y N|N</poll>

<poll>ABE-0008283-negative? Y|Y N|N</poll>

yfhA (b2554)

<poll>ABE-0008400-regulator? Y|Y N|N</poll>

<poll>ABE-0008400-positive? Y|Y N|N</poll>

<poll>ABE-0008400-negative? Y|Y N|N</poll>

yfhH (b2561)

<poll>ABE-0008428-regulator? Y|Y N|N</poll>

<poll>ABE-0008428-positive? Y|Y N|N</poll>

<poll>ABE-0008428-negative? Y|Y N|N</poll>

yfiE (b2577)

<poll>ABE-0008483-regulator? Y|Y N|N</poll>

<poll>ABE-0008483-positive? Y|Y N|N</poll>

<poll>ABE-0008483-negative? Y|Y N|N</poll>

yfjR (b2634)

<poll>ABE-0008676-regulator? Y|Y N|N</poll>

<poll>ABE-0008676-positive? Y|Y N|N</poll>

<poll>ABE-0008676-negative? Y|Y N|N</poll>

ygaA (b2709)

<poll>ABE-0008904-regulator? Y|Y N|N</poll>

<poll>ABE-0008904-positive? Y|Y N|N</poll>

<poll>ABE-0008904-negative? Y|Y N|N</poll>

ygaE (b2664)

<poll>ABE-0008765-regulator? Y|Y N|N</poll>

<poll>ABE-0008765-positive? Y|Y N|N</poll>

<poll>ABE-0008765-negative? Y|Y N|N</poll>

ygbI (b2735)

<poll>ABE-0008982-regulator? Y|Y N|N</poll>

<poll>ABE-0008982-positive? Y|Y N|N</poll>

<poll>ABE-0008982-negative? Y|Y N|N</poll>

ygeH (b2852)

<poll>ABE-0009368-regulator? Y|Y N|N</poll>

<poll>ABE-0009368-positive? Y|Y N|N</poll>

<poll>ABE-0009368-negative? Y|Y N|N</poll>

ygeK (b2855)

<poll>ABE-0009379-regulator? Y|Y N|N</poll>

<poll>ABE-0009379-positive? Y|Y N|N</poll>

<poll>ABE-0009379-negative? Y|Y N|N</poll>

ygeV (b2869)

<poll>ABE-0009420-regulator? Y|Y N|N</poll>

<poll>ABE-0009420-positive? Y|Y N|N</poll>

<poll>ABE-0009420-negative? Y|Y N|N</poll>

ygfI (b2921)

<poll>ABE-0009585-regulator? Y|Y N|N</poll>

<poll>ABE-0009585-positive? Y|Y N|N</poll>

<poll>ABE-0009585-negative? Y|Y N|N</poll>

ygiP (b3060)

<poll>ABE-0010045-regulator? Y|Y N|N</poll>

<poll>ABE-0010045-positive? Y|Y N|N</poll>

<poll>ABE-0010045-negative? Y|Y N|N</poll>

ygiT (b3021)

<poll>ABE-0009923-regulator? Y|Y N|N</poll>

<poll>ABE-0009923-positive? Y|Y N|N</poll>

<poll>ABE-0009923-negative? Y|Y N|N</poll>

ygjM (b3082)

<poll>ABE-0010126-regulator? Y|Y N|N</poll>

<poll>ABE-0010126-positive? Y|Y N|N</poll>

<poll>ABE-0010126-negative? Y|Y N|N</poll>

yhaJ (b3105)

<poll>ABE-0010213-regulator? Y|Y N|N</poll>

<poll>ABE-0010213-positive? Y|Y N|N</poll>

<poll>ABE-0010213-negative? Y|Y N|N</poll>

yhfR (b3375)

<poll>ABE-0011031-regulator? Y|Y N|N</poll>

<poll>ABE-0011031-positive? Y|Y N|N</poll>

<poll>ABE-0011031-negative? Y|Y N|N</poll>

yhiE (b3512)

<poll>ABE-0011475-regulator? Y|Y N|N</poll>

<poll>ABE-0011475-positive? Y|Y N|N</poll>

<poll>ABE-0011475-negative? Y|Y N|N</poll>

yhiF (b3507)

<poll>ABE-0011454-regulator? Y|Y N|N</poll>

<poll>ABE-0011454-positive? Y|Y N|N</poll>

<poll>ABE-0011454-negative? Y|Y N|N</poll>

yhiH (b3486)

<poll>ABE-0011381-regulator? Y|Y N|N</poll>

<poll>ABE-0011381-positive? Y|Y N|N</poll>

<poll>ABE-0011381-negative? Y|Y N|N</poll>

yhiW (b3515)

<poll>ABE-0011482-regulator? Y|Y N|N</poll>

<poll>ABE-0011482-positive? Y|Y N|N</poll>

<poll>ABE-0011482-negative? Y|Y N|N</poll>

yhiX (b3516)

<poll>ABE-0011487-regulator? Y|Y N|N</poll>

<poll>ABE-0011487-positive? Y|Y N|N</poll>

<poll>ABE-0011487-negative? Y|Y N|N</poll>

Gene has been renamed gadX.

PMID:12446650[35]

yhjB (b3520)

<poll>ABE-0011499-regulator? Y|Y N|N</poll>

<poll>ABE-0011499-positive? Y|Y N|N</poll>

<poll>ABE-0011499-negative? Y|Y N|N</poll>

yhjC (b3521)

<poll>ABE-0011503-regulator? Y|Y N|N</poll>

<poll>ABE-0011503-positive? Y|Y N|N</poll>

<poll>ABE-0011503-negative? Y|Y N|N</poll>

yiaG (b3555)

<poll>ABE-0011612-regulator? Y|Y N|N</poll>

<poll>ABE-0011612-positive? Y|Y N|N</poll>

<poll>ABE-0011612-negative? Y|Y N|N</poll>

yiaJ (b3574)

<poll>ABE-0011677-regulator? Y|Y N|N</poll>

<poll>ABE-0011677-positive? Y|Y N|N</poll>

<poll>ABE-0011677-negative? Y|Y N|N</poll>

yiaU (b3585)

<poll>ABE-0011710-regulator? Y|Y N|N</poll>

<poll>ABE-0011710-positive? Y|Y N|N</poll>

<poll>ABE-0011710-negative? Y|Y N|N</poll>

yidL (b3680)

<poll>ABE-0012034-regulator? Y|Y N|N</poll>

<poll>ABE-0012034-positive? Y|Y N|N</poll>

<poll>ABE-0012034-negative? Y|Y N|N</poll>

yidP (b3684)

<poll>ABE-0012049-regulator? Y|Y N|N</poll>

<poll>ABE-0012049-positive? Y|Y N|N</poll>

<poll>ABE-0012049-negative? Y|Y N|N</poll>

yidZ (b3711)

<poll>ABE-0012141-regulator? Y|Y N|N</poll>

<poll>ABE-0012141-positive? Y|Y N|N</poll>

<poll>ABE-0012141-negative? Y|Y N|N</poll>

yieP (b3755)

<poll>ABE-0012275-regulator? Y|Y N|N</poll>

<poll>ABE-0012275-positive? Y|Y N|N</poll>

<poll>ABE-0012275-negative? Y|Y N|N</poll>

yihL (b3872)

<poll>ABE-0012651-regulator? Y|Y N|N</poll>

<poll>ABE-0012651-positive? Y|Y N|N</poll>

<poll>ABE-0012651-negative? Y|Y N|N</poll>

yihW (b3884)

<poll>ABE-0012683-regulator? Y|Y N|N</poll>

<poll>ABE-0012683-positive? Y|Y N|N</poll>

<poll>ABE-0012683-negative? Y|Y N|N</poll>

yijC (b3963)

<poll>ABE-0012979-regulator? Y|Y N|N</poll>

<poll>ABE-0012979-positive? Y|Y N|N</poll>

<poll>ABE-0012979-negative? Y|Y N|N</poll>

yijO (b3954)

<poll>ABE-0012943-regulator? Y|Y N|N</poll>

<poll>ABE-0012943-positive? Y|Y N|N</poll>

<poll>ABE-0012943-negative? Y|Y N|N</poll>

yjdC (b4135)

<poll>ABE-0013537-regulator? Y|Y N|N</poll>

<poll>ABE-0013537-positive? Y|Y N|N</poll>

<poll>ABE-0013537-negative? Y|Y N|N</poll>

yjeB (b4178)

<poll>ABE-0013676-regulator? Y|Y N|N</poll>

<poll>ABE-0013676-positive? Y|Y N|N</poll>

<poll>ABE-0013676-negative? Y|Y N|N</poll>

yjgJ (b4251)

<poll>ABE-0013918-regulator? Y|Y N|N</poll>

<poll>ABE-0013918-positive? Y|Y N|N</poll>

<poll>ABE-0013918-negative? Y|Y N|N</poll>

yjhI (b4299)

<poll>ABE-0014092-regulator? Y|Y N|N</poll>

<poll>ABE-0014092-positive? Y|Y N|N</poll>

<poll>ABE-0014092-negative? Y|Y N|N</poll>

yjhU (b4295)

<poll>ABE-0014079-regulator? Y|Y N|N</poll>

<poll>ABE-0014079-positive? Y|Y N|N</poll>

<poll>ABE-0014079-negative? Y|Y N|N</poll>

yjiE (b4327)

<poll>ABE-0014192-regulator? Y|Y N|N</poll>

<poll>ABE-0014192-positive? Y|Y N|N</poll>

<poll>ABE-0014192-negative? Y|Y N|N</poll>

yjiR (b4340)

<poll>ABE-0014232-regulator? Y|Y N|N</poll>

<poll>ABE-0014232-positive? Y|Y N|N</poll>

<poll>ABE-0014232-negative? Y|Y N|N</poll>

yjjM (b4357)

<poll>ABE-0014287-regulator? Y|Y N|N</poll>

<poll>ABE-0014287-positive? Y|Y N|N</poll>

<poll>ABE-0014287-negative? Y|Y N|N</poll>

yjjQ (b4365)

<poll>ABE-0014322-regulator? Y|Y N|N</poll>

<poll>ABE-0014322-positive? Y|Y N|N</poll>

<poll>ABE-0014322-negative? Y|Y N|N</poll>

ykgA (b0300)

<poll>ABE-0001032-regulator? Y|Y N|N</poll>

<poll>ABE-0001032-positive? Y|Y N|N</poll>

<poll>ABE-0001032-negative? Y|Y N|N</poll>

ykgD (b0305)

<poll>ABE-0001054-regulator? Y|Y N|N</poll>

<poll>ABE-0001054-positive? Y|Y N|N</poll>

<poll>ABE-0001054-negative? Y|Y N|N</poll>

ykgK (b0294)

<poll>ABE-0001011-regulator? Y|Y N|N</poll>

<poll>ABE-0001011-positive? Y|Y N|N</poll>

<poll>ABE-0001011-negative? Y|Y N|N</poll>

ymfK (b1145)

<poll>ABE-0003851-regulator? Y|Y N|N</poll>

<poll>ABE-0003851-positive? Y|Y N|N</poll>

<poll>ABE-0003851-negative? Y|Y N|N</poll>

yncC (b1450)

<poll>ABE-0004837-regulator? Y|Y N|N</poll>

<poll>ABE-0004837-positive? Y|Y N|N</poll>

<poll>ABE-0004837-negative? Y|Y N|N</poll>

yneJ (b1526)

<poll>ABE-0005096-regulator? Y|Y N|N</poll>

<poll>ABE-0005096-positive? Y|Y N|N</poll>

<poll>ABE-0005096-negative? Y|Y N|N</poll>

ynfL (b1595)

<poll>ABE-0005326-regulator? Y|Y N|N</poll>

<poll>ABE-0005326-positive? Y|Y N|N</poll>

<poll>ABE-0005326-negative? Y|Y N|N</poll>

ypdB (b2381)

<poll>ABE-0007857-regulator? Y|Y N|N</poll>

<poll>ABE-0007857-positive? Y|Y N|N</poll>

<poll>ABE-0007857-negative? Y|Y N|N</poll>

ypdC (b2382)

<poll>ABE-0007859-regulator? Y|Y N|N</poll>

<poll>ABE-0007859-positive? Y|Y N|N</poll>

<poll>ABE-0007859-negative? Y|Y N|N</poll>

yqeI (b2847)

<poll>ABE-0009352-regulator? Y|Y N|N</poll>

<poll>ABE-0009352-positive? Y|Y N|N</poll>

<poll>ABE-0009352-negative? Y|Y N|N</poll>

yqhC (b3010)

<poll>ABE-0009884-regulator? Y|Y N|N</poll>

<poll>ABE-0009884-positive? Y|Y N|N</poll>

<poll>ABE-0009884-negative? Y|Y N|N</poll>

Prediction based on deduced amino acid sequence.

InterPro: IPR000005 Helix-turn-helix, AraC type

ytfH (b4212)

<poll>ABE-0013777-regulator? Y|Y N|N</poll>

<poll>ABE-0013777-positive? Y|Y N|N</poll>

<poll>ABE-0013777-negative? Y|Y N|N</poll>

Predicted based on deduced amino acid sequence.

IPR002577 Helix-turn-helix, HxlR type

zntR (b3292)

<poll>ABE-0010793-regulator? Y|Y N|N</poll>

<poll>ABE-0010793-positive? Y|Y N|N</poll>

<poll>ABE-0010793-negative? Y|Y N|N</poll>

activates transcription of zntA, which encodes a protein involved in metal efflux system

PMID:10048032[36]

zraR (b4004)

<poll>ABE-0013093-regulator? Y|Y N|N</poll>

<poll>ABE-0013093-positive? Y|Y N|N</poll>

<poll>ABE-0013093-negative? Y|Y N|N</poll>

PMID:11243806[37]

zur (b4046)

<poll>ABE-0013249-regulator? Y|Y N|N</poll>

<poll>ABE-0013249-positive? Y|Y N|N</poll>

<poll>ABE-0013249-negative? Y|Y N|N</poll>

repressor of the znu operon, which encodes a Zn2+ uptake system

PMID:9680209[38]

tnaL (b3707)

<poll>ABE-0012128-regulator? Y|Y N|N</poll>

<poll>ABE-0012128-positive? Y|Y N|N</poll>

<poll>ABE-0012128-negative? Y|Y N|N</poll>

This is leader peptide for the tna (tryptophanase) operon. It is involved in attenuation control of transcription of the operon. Not sure if this counts as a txn factor.

Since the action of TnaL is very indirect (TnaL stalls the ribosome which prevents Rho from terminating RNA polymerase.[39]), I would say it is not a transcription factor.

PMID:3902796[40], PMID:16061180[39]

yqeI (b2847)

<poll>ABE-0009352-regulator? Y|Y N|N</poll>

<poll>ABE-0009352-positive? Y|Y N|N</poll>

<poll>ABE-0009352-negative? Y|Y N|N</poll>

Predicted to be a DNA-binding protein based on the deduced amino acid sequence.

InterPro Q46942

edit table

</protect>

References

See Help:References for how to manage references in EcoliWiki.

  1. ↑ Tsang, AW & Escalante-Semerena, JC (1998) CobB, a new member of the SIR2 family of eucaryotic regulatory proteins, is required to compensate for the lack of nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase activity in cobT mutants during cobalamin biosynthesis in Salmonella typhimurium LT2. J. Biol. Chem. 273 31788-94 PubMed
  2. ↑ Tsang, AW et al. (1998) Studies of regulation of expression of the propionate (prpBCDE) operon provide insights into how Salmonella typhimurium LT2 integrates its 1,2-propanediol and propionate catabolic pathways. J. Bacteriol. 180 6511-8 PubMed
  3. ↑ Larson, TJ et al. (1987) Purification and characterization of the repressor for the sn-glycerol 3-phosphate regulon of Escherichia coli K12. J. Biol. Chem. 262 15869-74 PubMed
  4. ↑ Lamark, T et al. (1996) The complex bet promoters of Escherichia coli: regulation by oxygen (ArcA), choline (BetI), and osmotic stress. J. Bacteriol. 178 1655-62 PubMed
  5. ↑ Typas, A et al. (2007) Stationary phase reorganisation of the Escherichia coli transcription machinery by Crl protein, a fine-tuner of sigmas activity and levels. EMBO J. 26 1569-78 PubMed
  6. ↑ Peekhaus, N & Conway, T (1998) Positive and negative transcriptional regulation of the Escherichia coli gluconate regulon gene gntT by GntR and the cyclic AMP (cAMP)-cAMP receptor protein complex. J. Bacteriol. 180 1777-85 PubMed
  7. ↑ Van Dyk, TK et al. (2004) Characterization of the Escherichia coli AaeAB efflux pump: a metabolic relief valve? J. Bacteriol. 186 7196-204 PubMed
  8. ↑ Sperandio, V et al. (2002) Quorum-sensing Escherichia coli regulator A: a regulator of the LysR family involved in the regulation of the locus of enterocyte effacement pathogenicity island in enterohemorrhagic E. coli. Infect. Immun. 70 3085-93 PubMed
  9. ↑ Carter, EL et al. (2007) Escherichia coli abg genes enable uptake and cleavage of the folate catabolite p-aminobenzoyl-glutamate. J. Bacteriol. 189 3329-34 PubMed
  10. ↑ Iuchi, S & Lin, EC (1988) arcA (dye), a global regulatory gene in Escherichia coli mediating repression of enzymes in aerobic pathways. Proc. Natl. Acad. Sci. U.S.A. 85 1888-92 PubMed
  11. ↑ Iuchi, S et al. (1989) Differentiation of arcA, arcB, and cpxA mutant phenotypes of Escherichia coli by sex pilus formation and enzyme regulation. J. Bacteriol. 171 2889-93 PubMed
  12. ↑ Iuchi, S et al. (1989) A second global regulator gene (arcB) mediating repression of enzymes in aerobic pathways of Escherichia coli. J. Bacteriol. 171 868-73 PubMed
  13. ↑ Iwanicka-Nowicka, R & Hryniewicz, MM (1995) A new gene, cbl, encoding a member of the LysR family of transcriptional regulators belongs to Escherichia coli cys regulon. Gene 166 11-7 PubMed
  14. ↑ Jovanovic, M et al. (2003) The LysR-type transcriptional regulator CysB controls the repression of hslJ transcription in Escherichia coli. Microbiology (Reading, Engl.) 149 3449-59 PubMed
  15. ↑ Zolkiewski, M (1999) ClpB cooperates with DnaK, DnaJ, and GrpE in suppressing protein aggregation. A novel multi-chaperone system from Escherichia coli. J. Biol. Chem. 274 28083-6 PubMed
  16. ↑ Mogk, A et al. (1999) Identification of thermolabile Escherichia coli proteins: prevention and reversion of aggregation by DnaK and ClpB. EMBO J. 18 6934-49 PubMed
  17. ↑ Lamblin, AF & Fuchs, JA (1994) Functional analysis of the Escherichia coli K-12 cyn operon transcriptional regulation. J. Bacteriol. 176 6613-22 PubMed
  18. ↑ Pedersen, H et al. (1991) Heterologous cooperativity in Escherichia coli. The CytR repressor both contacts DNA and the cAMP receptor protein when binding to the deoP2 promoter. J. Biol. Chem. 266 17804-8 PubMed
  19. ↑ Heincz, MC et al. (1984) Purification and characterization of D-serine deaminase activator protein. J. Bacteriol. 160 42-9 PubMed
  20. ↑ Gall, BG & Hartl, DL (1975) Regulation of newly evolved enzymes. II. The ebg repressor. Genetics 81 427-35 PubMed
  21. ↑ Liu, X & Matsumura, P (1995) An alternative sigma factor controls transcription of flagellar class-III operons in Escherichia coli: gene sequence, overproduction, purification and characterization. Gene 164 81-4 PubMed
  22. ↑ Gu, D et al. (2004) Identification and characterization of the DNA-binding domain of the multifunctional PutA flavoenzyme. J. Biol. Chem. 279 31171-6 PubMed
  23. ↑ Little, JW et al. (1981) Purified lexA protein is a repressor of the recA and lexA genes. Proc. Natl. Acad. Sci. U.S.A. 78 4199-203 PubMed
  24. ↑ Brent, R & Ptashne, M (1981) Mechanism of action of the lexA gene product. Proc. Natl. Acad. Sci. U.S.A. 78 4204-8 PubMed
  25. ↑ Rolfes, RJ & Zalkin, H (1988) Escherichia coli gene purR encoding a repressor protein for purine nucleotide synthesis. Cloning, nucleotide sequence, and interaction with the purF operator. J. Biol. Chem. 263 19653-61 PubMed
  26. ↑ Choi, YL et al. (1989) Cloning and sequencing of an Escherichia coli gene, nlp, highly homologous to the ner genes of bacteriophages Mu and D108. J. Bacteriol. 171 5222-5 PubMed
  27. ↑ Kawamukai, M et al. (1991) Nucleotide sequence and characterization of the sfs1 gene: sfs1 is involved in CRP*-dependent mal gene expression in Escherichia coli. J. Bacteriol. 173 2644-8 PubMed
  28. ↑ Cao, GJ & Sarkar, N (1992) Identification of the gene for an Escherichia coli poly(A) polymerase. Proc. Natl. Acad. Sci. U.S.A. 89 10380-4 PubMed
  29. ↑ Iwig, JS et al. (2006) Nickel homeostasis in Escherichia coli - the rcnR-rcnA efflux pathway and its linkage to NikR function. Mol. Microbiol. 62 252-62 PubMed
  30. ↑ Horlacher, R & Boos, W (1997) Characterization of TreR, the major regulator of the Escherichia coli trehalose system. J. Biol. Chem. 272 13026-32 PubMed
  31. ↑ Grandori, R et al. (1998) Biochemical characterization of WrbA, founding member of a new family of multimeric flavodoxin-like proteins. J. Biol. Chem. 273 20960-6 PubMed
  32. ↑ Ganduri, YL et al. (1993) TdcA, a transcriptional activator of the tdcABC operon of Escherichia coli, is a member of the LysR family of proteins. Mol. Gen. Genet. 240 395-402 PubMed
  33. ↑ Seeger, C et al. (1995) Identification and characterization of genes (xapA, xapB, and xapR) involved in xanthosine catabolism in Escherichia coli. J. Bacteriol. 177 5506-16 PubMed
  34. ↑ Ohnishi, H et al. (1975) [Pharmacology of cornary dilator agent, trapymin. (2) Analysis of its mode of action]. Nippon Yakurigaku Zasshi 71 727-38 PubMed
  35. ↑ Ma, Z et al. (2002) Collaborative regulation of Escherichia coli glutamate-dependent acid resistance by two AraC-like regulators, GadX and GadW (YhiW). J. Bacteriol. 184 7001-12 PubMed
  36. ↑ Brocklehurst, KR et al. (1999) ZntR is a Zn(II)-responsive MerR-like transcriptional regulator of zntA in Escherichia coli. Mol. Microbiol. 31 893-902 PubMed
  37. ↑ Leonhartsberger, S et al. (2001) The hydH/G Genes from Escherichia coli code for a zinc and lead responsive two-component regulatory system. J. Mol. Biol. 307 93-105 PubMed
  38. ↑ Patzer, SI & Hantke, K (1998) The ZnuABC high-affinity zinc uptake system and its regulator Zur in Escherichia coli. Mol. Microbiol. 28 1199-210 PubMed
  39. ↑ 39.0 39.1 Cruz-Vera, LR et al. (2005) Features of ribosome-peptidyl-tRNA interactions essential for tryptophan induction of tna operon expression. Mol. Cell 19 333-43 PubMed
  40. ↑ Stewart, V & Yanofsky, C (1985) Evidence for transcription antitermination control of tryptophanase operon expression in Escherichia coli K-12. J. Bacteriol. 164 731-40 PubMed
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