hns:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
hns |
|---|---|
| Mnemonic |
Histone-like protein H-NS |
| Synonyms |
ECK1232, b1237, JW1225, bglY, cur, drc, drdX, drs, irk, mssyA, msyA, osmZ, pilG, topX, virR, hnsA, topS, B1, H1[1] |
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Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
27.84 minutes |
MG1655: 1292145..1291732 |
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NC_012967: 1292716..1292303 |
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NC_012759: 1181230..1181643 |
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W3110 |
|
W3110: 1294499..1294086 |
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DH10B: 1332386..1331973 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
|
Coding Start (SO:0000323) |
1291735 |
Edman degradation |
PMID:2020545[2] |
| |
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
Δhns (Keio:JW1225) |
deletion |
deletion |
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hns::Tn5KAN-2 (FB20271) |
Insertion at nt 323 in Plus orientation |
does not contain pKD46 | |||||
|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire D-Galactoniate |
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|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire D-Galacturonate |
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Δhns::kan |
deletion |
Biolog:respiration |
unable to respire D-Glucuronate |
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|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire Acetate |
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|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire a-Hydroxybutyrate |
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|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire a-Ketobutyrate |
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|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire a-Ketoglutarate |
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Δhns::kan |
deletion |
Biolog:respiration |
unable to respire Succinate |
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Δhns::kan |
deletion |
Biolog:respiration |
unable to respire Bromosuccinate |
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|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire L-Alanine |
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|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire L-Asparagine |
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|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire L-Aspartate |
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|
hns-206 |
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|
hns-1 |
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|
Δhns-746::kan |
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Notes
Genetic Interactions
| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW1225 |
Plasmid clone |
Status:Clone OK Primer 1:GCCAGCGAAGCACTTAAAATTCT Primer 2:CCTTGCTTGATCAGGAAATCGTC | |
|
Linked marker |
est. P1 cotransduction: 5% [14] | ||
|
Linked marker |
est. P1 cotransduction: 66% [14] | ||
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Kajitani, M & Ishihama, A (1991) Identification and sequence determination of the host factor gene for bacteriophage Q beta. Nucleic Acids Res. 19 1063-6 PubMed
- ↑ Yamada, H et al. (1990) An Escherichia coli protein that preferentially binds to sharply curved DNA. J. Biochem. 108 420-5 PubMed
- ↑ Laine, B et al. (1984) A DNA-binding protein from E. coli isolation, characterization and its relationship with proteins H1 and B1. Biochem. Biophys. Res. Commun. 119 1147-53 PubMed
- ↑ Pasquali, C et al. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17 547-55 PubMed
- ↑ Link, AJ et al. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18 1259-313 PubMed
- ↑ Wilkins, MR et al. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J. Mol. Biol. 278 599-608 PubMed
- ↑ Tonella, L et al. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19 1960-71 PubMed
- ↑ 9.0 9.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 10.0 10.1 10.2 CGSC: The Coli Genetics Stock Center
- ↑ Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
- ↑ 12.00 12.01 12.02 12.03 12.04 12.05 12.06 12.07 12.08 12.09 12.10 12.11 Ito, M et al. (2005) Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays. Metab. Eng. 7 318-27 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 14.0 14.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).