hns:Gene: Difference between revisions

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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{|   id="X46a9c2b14983c" class=" tableEdit Gene_nomenclature_table"


|-
|-
!align=left {{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
||
||
''hns''  
''hns''
|-
|-
!align=left {{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
||
||
 
Histone-like protein H-NS
|-
|-
!align=left {{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
||
||
''ECK1232, b1237, JW1225, bglY, cur, drc, drdX, drs, irk, mssyA, msyA, osmZ, pilG, topX, virR, hnsA, topS, B1, H1''<ref name='LIB:Riley_2006'/>
''ECK1232, b1237, JW1225, bglY, cur, drc, drdX, drs, irk, mssyA, msyA, osmZ, pilG, topX, virR, hnsA, topS, B1, H1''<ref name='LIB:Riley_2006'/>, fimG, H1, verA''


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*  
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****************************************************************************************** -->{{Gene_location_help}}
****************************************************************************************** -->{{Gene_location_help}}
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46a9c2b1c59e1"  class=" tableEdit Gene_location_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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27.84 minutes&nbsp;
27.84 minutes&nbsp;
|
|
MG1655: 1292145..1291732<br />{{GBrowseFigureByCoord|1290732|1293145|ecoli|MG1655}}
MG1655: 1292145..1291732<br /><gbrowseImage>
name=NC_000913:1291732..1292145
source=MG1655
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10457 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10457 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|1290732|1293145|GBrowse(MG1655)}}
{{GBrowseLink|MG1655|NC_000913|1290732|1293145|GBrowse(MG1655)}}
   
   
|
|
{{GBrowseFastaLink|ecoli|NC_000913|1291732|1292145|FASTA Dump}}
{{GBrowseFastaLink|MG1655|NC_000913|1291732|1292145|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10457 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=EG10457 EcoCyc Sequence Dump]  
|-
|
[[REL606]]
|
|
NC_012967: 1292716..1292303<br /><gbrowseImage>
name=NC_012967:1292303..1292716
source=REL606
preset=GeneLocation
</gbrowseImage>
|
{{GBrowseLink|REL606|NC_012967|1292303|1292716|GBrowse (REL606)}}
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{{GBrowseFastaLink|REL606|NC_012967|1292303|1292716|FASTA Dump}}
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[[BW2952]]
|
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NC_012759: 1181230..1181643<br /><gbrowseImage>
name=NC_012759:1181230..1181643
source=BW2952
preset=GeneLocation
</gbrowseImage>
|
{{GBrowseLink|BW2952|NC_012759|1181230|1181643|GBrowse (BW2952)}}
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{{GBrowseFastaLink|BW2952|NC_012759|1181230|1181643|FASTA Dump}}
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&nbsp;
&nbsp;
|
|
W3110: 1294499..1294086<br />{{GBrowseFigureByCoord|1293086|1295499|ecoli_W3110|W3110}}
W3110: 1294499..1294086<br /><gbrowseImage>
name=NC_007779:1294086..1294499
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
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{{GBrowseLink|ecoli_W3110|AC_000091|1293086|1295499|GBrowse(W3110)}}  
{{GBrowseLink|W3110|NC_007779|1293086|1295499|GBrowse(W3110)}}  
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{{GBrowseFastaLink|W3110|NC_007779|1294086|1294499|FASTA Dump}}
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[[DH10B]]
|
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{{GBrowseFastaLink|ecoli_W3110|AC_000091|1294086|1294499|FASTA Dump}}


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DH10B: 1332386..1331973<br /><gbrowseImage>
name=NC_010473:1331973..1332386
source=DH10B
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|
{{GBrowseLink|DH10B|NC_010473|1331147|1333212|GBrowse(DH10B)}}
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{{GBrowseFastaLink|DH10B|NC_010473|1331147|1333212|FASTA Dump}}
 
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="X46a9c2b2729c5"  class=" tableEdit Gene_sequence_features_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
1291735
|
Edman degradation
|
PMID:2020545<br />PMID:2126011<br />PMID:6370250<br />PMID:8740179<br />PMID:9298646<br />PMID:9600841<br />PMID:9740056<br />
|


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*  
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{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" {{Prettytable}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="P46a9c2b2b4118"  class=" tableEdit Gene_allele_table dataTable" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-  
|-  
|
|
&Delta;hns (Keio:JW1225)
''hns(del)'' (Keio:JW1225)
|
|
deletion
deletion
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PMID:16738554
PMID:16738554
|
|
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]<br>[http://cgsc2.biology.yale.edu/Strain.php?ID=107392 CGSC9111]<ref name='LIB:cgsc'/>  
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]
 
[http://cgsc2.biology.yale.edu/Strain.php?ID=107392 CGSC9111]<ref name='LIB:cgsc'/>  
|
|-
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0004152 hns::Tn5KAN-2] (FB20271)
|
Insertion at nt 323 in Plus orientation
|
 
|
 
|
 
|
PMID:15262929
|
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20271]
|
does not contain [[pKD46]]
|-
|
''hns(del)::kan''
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|D-Galactoniate]]
|
PMID:16095938
|
 
|
|-
|
''hns(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|D-Galacturonate]]
|
PMID:16095938
|
 
|
|-
|
''hns(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|D-Glucuronate]]
|
PMID:16095938
|
 
|
|-
|
''hns(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|Acetate]]
|
PMID:16095938
|
 
|
|-
|
''hns(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|a-Hydroxybutyrate]]
|
PMID:16095938
|
 
|
|
   
   
|-  
|-  
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0004152 hns]
''hns(del)''::kan
|
deletion
|
|


|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|a-Ketobutyrate]]
|
PMID:16095938
|
|


|
|-
|
''hns(del)''::kan
|
deletion
|
|


|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|a-Ketoglutarate]]
|
PMID:16095938
|
|


|
|
PMID:12519969
|-
|
''hns(del)''::kan
|
|
[[asapstrains:ASAP|ASAP]]
deletion
|
|
At position 323 in Plus orientation, does not contain plasmid [[pKD46]].<br />ASAP strain name: FB20271
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|Succinate]]
|
PMID:16095938
|
 
|
   
|-
|
''hns(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|Bromosuccinate]]
|
PMID:16095938
|
 
|
|-
|
''hns(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|L-Alanine]]
|
PMID:16095938
|
 
|
|-
|
''hns(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|L-Asparagine]]
|
PMID:16095938
|
 
|
|-
|
''hns(del)''::kan
|
deletion
|
 
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|L-Aspartate]]
|
PMID:16095938
|
 
|
|-  
|-  
|
|
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|-  
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|
|
''&#916;hns-746::kan''
''hns(del)-746::kan''
|
|


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|
   
   
|-
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hns
|
deletion
|


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Sensitivity to
|
increases sensitivity to bicyclomycin
|
PMID:21357484
|
 
|
fig 2
|-
|
''hns-206::amp''
|
 
|
 
|
Auxotrophies
|
Inactivation of ''hns'' strongly reduced the SOS induction of ''sbmC'' compared to the wild type, fig 1B. same applies to double mutant ''hns'' ''rpoS''.
|
PMID:11689018
|
 
|
|-
|
''bglY202''
|
 
|
 
|
Carbon utilization
|
Utilization of arbutin (a Beta-glucoside) as a carbon source, table 3.
|
PMID:6266910
|
Experimental Strain: FA31
|
|-
|
''bglY203''
|
 
|
 
|
Carbon utilization
|
able to utilize arbutin and salicin as a carbon source, table 3.
|
PMID:6266910
|
FA35, FA37, FA39, FS20, FS29
|
Mutations also utilizing similar carbon sources are: ''bglY204'', ''bglY205'', ''bglY206'', ''bglY207''
 
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===Notes===
===Notes===


==Genetic Interactions==
{{BacktoTop}}
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.13041.P4e04bd182e8da-->
<!--
******************************************************************************************
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="P4e04bd182e8da"  class=" tableEdit Genetic_interaction_table dataTable" 
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.13041.P4e04bd182e8da&page=13041&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table]</span> || || || || || ||
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===Notes===


==Genetic Resources==
==Genetic Resources==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46a9c2b361571"  class=" tableEdit Gene_resource_table"   
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!|Resource!!Resource Type!!Source!!Notes/Reference
!|Resource!!Resource Type!!Source!!Notes/Reference
Line 259: Line 628:


Primer 2:CCTTGCTTGATCAGGAAATCGTC  
Primer 2:CCTTGCTTGATCAGGAAATCGTC  
|-
|
[[:Category:Kohara_Phage:4D8|4D8]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=250 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:3D5|3D5]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=251 Genobase]
|
PMID:3038334
|-  
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Synonyms:zch-506::Tn10, zci-506::Tn10  
Synonyms:zch-506::Tn10, zci-506::Tn10  


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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N46a9c2b3edb75"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10457 EcoCyc:EG10457]
EcoCyc:EG10457
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
[[EcoGene]]
|
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0452 EchoBASE:EB0452]
EcoGene:EG10457
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
[[RegulonDB]]
|
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b1237 EcoliGenExpDB:b1237]
RegulonDB:ECK120000450
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://BioCyc.org/ECOL199310/new-image?object=C1701 ECOL199310CYC:C1701]
[http://www.ncbi.nlm.nih.gov/gene?term=945829 GeneID:945829]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
[[EchoBASE]]
|
|
[http://ecogene.org/geneinfo.php?eg_id=EG10457 EcoGene:EG10457]
EchoBASE:EB0452
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
[[ASAP]]
|
|
[http://BioCyc.org/ECOO157/new-image?object=HNS ECOO157CYC:HNS]
ASAP:ABE-0004152
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]  
|-  
|
[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])
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[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/960 CGSC:960]
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0004152&formSubmitReturn=1 ASAP:ABE-0004152]
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==References==
==References==
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===Categories===
===Categories===
[[Category:Gene List:MG1655]]
[[Category:Gene List:MG1655]]
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[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the Keio knockout collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:Genes in the ASKA clone collection]]
[[Category:hns genes]][[Category:Gene_List:DH10B]]
[[Category:hns genes]][[Category:Gene_List:DH10B]][[Category:Gene_List:REL606]]
[[Category:Gene_List:BW2952]]

Latest revision as of 20:30, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

hns

Mnemonic

Histone-like protein H-NS

Synonyms

ECK1232, b1237, JW1225, bglY, cur, drc, drdX, drs, irk, mssyA, msyA, osmZ, pilG, topX, virR, hnsA, topS, B1, H1[1], fimG, H1, verA

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

27.84 minutes 

MG1655: 1292145..1291732
<gbrowseImage> name=NC_000913:1291732..1292145 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1292716..1292303
<gbrowseImage> name=NC_012967:1292303..1292716 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1181230..1181643
<gbrowseImage> name=NC_012759:1181230..1181643 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1294499..1294086
<gbrowseImage> name=NC_007779:1294086..1294499 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1332386..1331973
<gbrowseImage> name=NC_010473:1331973..1332386 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

1291735

Edman degradation

PMID:2020545[2]
PMID:2126011[3]
PMID:6370250[4]
PMID:8740179[5]
PMID:9298646[6]
PMID:9600841[7]
PMID:9740056[8]


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

hns(del) (Keio:JW1225)

deletion

deletion

PMID:16738554[9]

Shigen

CGSC9111[10]

hns::Tn5KAN-2 (FB20271)

Insertion at nt 323 in Plus orientation

PMID:15262929[11]

E. coli Genome Project:FB20271

does not contain pKD46

hns(del)::kan

deletion

Biolog:respiration

unable to respire D-Galactoniate

PMID:16095938[12]

hns(del)::kan

deletion

Biolog:respiration

unable to respire D-Galacturonate

PMID:16095938[12]

hns(del)::kan

deletion

Biolog:respiration

unable to respire D-Glucuronate

PMID:16095938[12]

hns(del)::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938[12]

hns(del)::kan

deletion

Biolog:respiration

unable to respire a-Hydroxybutyrate

PMID:16095938[12]

hns(del)::kan

deletion

Biolog:respiration

unable to respire a-Ketobutyrate

PMID:16095938[12]

hns(del)::kan

deletion

Biolog:respiration

unable to respire a-Ketoglutarate

PMID:16095938[12]

hns(del)::kan

deletion

Biolog:respiration

unable to respire Succinate

PMID:16095938[12]

hns(del)::kan

deletion

Biolog:respiration

unable to respire Bromosuccinate

PMID:16095938[12]

hns(del)::kan

deletion

Biolog:respiration

unable to respire L-Alanine

PMID:16095938[12]

hns(del)::kan

deletion

Biolog:respiration

unable to respire L-Asparagine

PMID:16095938[12]

hns(del)::kan

deletion

Biolog:respiration

unable to respire L-Aspartate

PMID:16095938[12]

hns-206

CGSC:19435

hns-1

CGSC:26967

hns(del)-746::kan

PMID:16738554[9]

CGSC:101388

hns

deletion

Sensitivity to

increases sensitivity to bicyclomycin

PMID:21357484[13]

fig 2

hns-206::amp

Auxotrophies

Inactivation of hns strongly reduced the SOS induction of sbmC compared to the wild type, fig 1B. same applies to double mutant hns rpoS.

PMID:11689018[14]

bglY202

Carbon utilization

Utilization of arbutin (a Beta-glucoside) as a carbon source, table 3.

PMID:6266910[15]

Experimental Strain: FA31

bglY203

Carbon utilization

able to utilize arbutin and salicin as a carbon source, table 3.

PMID:6266910[15]

FA35, FA37, FA39, FS20, FS29

Mutations also utilizing similar carbon sources are: bglY204, bglY205, bglY206, bglY207

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW1225

Plasmid clone

Shigen

PMID:16769691[16]

Status:Clone OK

Primer 1:GCCAGCGAAGCACTTAAAATTCT

Primer 2:CCTTGCTTGATCAGGAAATCGTC

4D8

Kohara Phage

Genobase

PMID:3038334[17]

3D5

Kohara Phage

Genobase

PMID:3038334[17]

fadR13::Tn10

Linked marker

CAG18497 = CGSC7365[10]

est. P1 cotransduction: 5% [18]

oppC506::Tn10

Linked marker

CAG12169 = CGSC7369[10]

est. P1 cotransduction: 66% [18]
Synonyms:zch-506::Tn10, zci-506::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10457

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10457

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000450

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945829

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0452

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004152

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Kajitani, M & Ishihama, A (1991) Identification and sequence determination of the host factor gene for bacteriophage Q beta. Nucleic Acids Res. 19 1063-6 PubMed
  3. ↑ Yamada, H et al. (1990) An Escherichia coli protein that preferentially binds to sharply curved DNA. J. Biochem. 108 420-5 PubMed
  4. ↑ Laine, B et al. (1984) A DNA-binding protein from E. coli isolation, characterization and its relationship with proteins H1 and B1. Biochem. Biophys. Res. Commun. 119 1147-53 PubMed
  5. ↑ Pasquali, C et al. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17 547-55 PubMed
  6. ↑ Link, AJ et al. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18 1259-313 PubMed
  7. ↑ Wilkins, MR et al. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J. Mol. Biol. 278 599-608 PubMed
  8. ↑ Tonella, L et al. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19 1960-71 PubMed
  9. ↑ 9.0 9.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  10. ↑ 10.0 10.1 10.2 CGSC: The Coli Genetics Stock Center
  11. ↑ Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
  12. ↑ 12.00 12.01 12.02 12.03 12.04 12.05 12.06 12.07 12.08 12.09 12.10 12.11 Ito, M et al. (2005) Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays. Metab. Eng. 7 318-27 PubMed
  13. ↑ Tran, L et al. (2011) Single-gene deletion mutants of Escherichia coli with altered sensitivity to bicyclomycin, an inhibitor of transcription termination factor Rho. J. Bacteriol. 193 2229-35 PubMed
  14. ↑ Oh, TJ et al. (2001) The Escherichia coli SOS gene sbmC is regulated by H-NS and RpoS during the SOS induction and stationary growth phase. Biochem. Biophys. Res. Commun. 288 1052-8 PubMed
  15. ↑ 15.0 15.1 Defez, R & De Felice, M (1981) Cryptic operon for beta-glucoside metabolism in Escherichia coli K12: genetic evidence for a regulatory protein. Genetics 97 11-25 PubMed
  16. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  17. ↑ 17.0 17.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  18. ↑ 18.0 18.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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