clpX:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

clpX

Gene Synonym(s)

ECK0432, b0438, JW0428, LopC[1], lopC

Product Desc.

ClpX[2][3];

Component of ClpX ATP-dependent protease specificity component and chaperone[3]; ClpAXP[3]; ClpXP[3]

ATPase subunit of ClpXP protease; ClpXP degrades ssrA-tagged proteins; molecular chaperone[4]

Product Synonyms(s)

ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease[1], B0438[2][1], LopC[2][1] , ECK0432, JW0428, lopC, b0438

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): clpPX[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

clpX

Mnemonic

Caseinolytic protease

Synonyms

ECK0432, b0438, JW0428, LopC[1], lopC

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

9.84 minutes 

MG1655: 456650..457924
<gbrowseImage> name=NC_000913:456650..457924 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 428131..429405
<gbrowseImage> name=NC_012967:428131..429405 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 359409..360683
<gbrowseImage> name=NC_012759:359409..360683 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 456650..457924
<gbrowseImage> name=NC_007779:456650..457924 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 395981..397255
<gbrowseImage> name=NC_010473:395981..397255 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

456653

Edman degradation

PMID:8226769


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

clpX(del) (Keio:JW0428)

deletion

deletion

PMID:16738554

Shigen

CGSC8591[5]

clpX::Tn5KAN-2 (FB20174)

Insertion at nt 641 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20174

does not contain pKD46

clpX(del)::kan

deletion

Biolog:respiration

unable to respire a-Ketoglutarate

PMID:16095938

clpX(del)::kan

deletion

Biolog:respiration

unable to respire Succinate

PMID:16095938

clpX(del)::kan

deletion

Biolog:respiration

unable to respire Bromosuccinate

PMID:16095938

clpX(del)::kan

deletion

Biolog:respiration

unable to respire L-Asparagine

PMID:16095938

clpX(del)::kan

deletion

Biolog:respiration

unable to respire L-Aspartate

PMID:16095938

E185Q

E185Q

Loss of ATP hydrolysis in vitro

PMID:15989952

Mutant protein retains normal assembly, ATP binding , and the ability to bind polypeptide substrates

clpX103(del-ins)::kan

PMID:8226770

CGSC:90914

clpX724(del)::kan

PMID:16738554

CGSC:100344

clpX1::kan

insertion

defective in turnover of lambda O protein

PMID:8226770

clpX(del)::kan

deletion

Biolog:respiration

unable to respire Bromosuccinate

PMID:16095938


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0428

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCACAGATAAACGCAAAGATGG

Primer 2:CCTTCACCAGATGCCTGTTGCGC

3B6

Kohara Phage

Genobase

PMID:3038334

tsx-247::Tn10

Linked marker

CAG12148 = CGSC7337[5]

est. P1 cotransduction: 39% [6]

zaj-3054::Tn10

Linked marker

CAG12017 = CGSC7339[5]

est. P1 cotransduction: 92% [6]
Synonyms:zba-3054::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10159

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10159

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000155

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945083

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0157

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001517

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

ClpX

Synonyms

ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease[1], B0438[2][1], LopC[2][1] , ECK0432, JW0428, lopC, b0438

Product description

ClpX[2][3];

Component of ClpX ATP-dependent protease specificity component and chaperone[3]; ClpAXP[3]; ClpXP[3]

ATPase subunit of ClpXP protease; ClpXP degrades ssrA-tagged proteins; molecular chaperone[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00175

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004487

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013093

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0006457

protein folding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00175

P

Seeded from EcoCyc (v14.0)

complete

GO:0006457

protein folding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004487

P

Seeded from EcoCyc (v14.0)

complete

GO:0006950

response to stress

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0346

P

Seeded from EcoCyc (v14.0)

complete

GO:0008270

zinc ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010603

F

Seeded from EcoCyc (v14.0)

complete

GO:0008270

zinc ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0862

F

Seeded from EcoCyc (v14.0)

complete

GO:0016887

ATPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010603

F

Seeded from EcoCyc (v14.0)

complete

GO:0017111

nucleoside-triphosphatase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

GO:0019538

protein metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010603

P

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

GO:0046983

protein dimerization activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010603

F

Seeded from EcoCyc (v14.0)

complete

GO:0051082

unfolded protein binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00175

F

Seeded from EcoCyc (v14.0)

complete

GO:0051082

unfolded protein binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004487

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of ClpX ATP-dependent protease specificity component and chaperone

could be indirect

Protein

clpA

PMID:15690043

Experiment(s):EBI-884518

Protein

clpB

PMID:15690043

Experiment(s):EBI-884518

Protein

metK

PMID:15690043

Experiment(s):EBI-884518

Protein

mreB

PMID:15690043

Experiment(s):EBI-884518

Protein

pstB

PMID:15690043

Experiment(s):EBI-884518

Protein

tufA

PMID:15690043

Experiment(s):EBI-884518

Protein

hscB

PMID:15690043

Experiment(s):EBI-884518

Protein

ahpC

PMID:15690043

Experiment(s):EBI-891405

Protein

dnaK

PMID:15690043

Experiment(s):EBI-891405

Protein

grpE

PMID:15690043

Experiment(s):EBI-891405

Protein

rfbB

PMID:15690043

Experiment(s):EBI-891405

Protein

rplL

PMID:15690043

Experiment(s):EBI-891405

Protein

rpmC

PMID:15690043

Experiment(s):EBI-891405

Protein

rpmG

PMID:15690043

Experiment(s):EBI-891405

Protein

slyB

PMID:16606699

Experiment(s):EBI-1136646

Protein

intD

PMID:16606699

Experiment(s):EBI-1136646

Protein

hypB

PMID:16606699

Experiment(s):EBI-1136646

Protein

rho

PMID:16606699

Experiment(s):EBI-1136646

Protein

dnaK

PMID:16606699

Experiment(s):EBI-1136646

Protein

inaA

PMID:16606699

Experiment(s):EBI-1136646

Protein

yhbJ

PMID:16606699

Experiment(s):EBI-1136646

Protein

yibL

PMID:16606699

Experiment(s):EBI-1136646

Protein

ybhK

PMID:16606699

Experiment(s):EBI-1136646

Protein

sdhA

PMID:16606699

Experiment(s):EBI-1136646

Protein

nadE

PMID:16606699

Experiment(s):EBI-1136646

Protein

ahpC

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):2.017396

Protein

clpB

PMID:19402753

MALDI(Z-score):28.584015

Protein

recA

PMID:19402753

MALDI(Z-score):22.110074

Protein

pstB

PMID:19402753

MALDI(Z-score):22.106865

Protein

mreB

PMID:19402753

MALDI(Z-score):33.221749

Protein

rfbB

PMID:19402753

LCMS(ID Probability):99.0

Protein

metK

PMID:19402753

MALDI(Z-score):33.591550

Protein

Subunits of ClpAXP

could be indirect

Protein

Subunits of ClpXP

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTDKRKDGSG KLLYCSFCGK SQHEVRKLIA GPSVYICDEC VDLCNDIIRE EIKEVAPHRE
RSALPTPHEI RNHLDDYVIG QEQAKKVLAV AVYNHYKRLR NGDTSNGVEL GKSNILLIGP
TGSGKTLLAE TLARLLDVPF TMADATTLTE AGYVGEDVEN IIQKLLQKCD YDVQKAQRGI
VYIDEIDKIS RKSDNPSITR DVSGEGVQQA LLKLIEGTVA AVPPQGGRKH PQQEFLQVDT
SKILFICGGA FAGLDKVISH RVETGSGIGF GATVKAKSDK ASEGELLAQV EPEDLIKFGL
IPEFIGRLPV VATLNELSEE ALIQILKEPK NALTKQYQAL FNLEGVDLEF RDEALDAIAK
KAMARKTGAR GLRSIVEAAL LDTMYDLPSM EDVEKVVIDE SVIDGQSKPL LIYGKPEAQQ ASGE
Length

424

Mol. Wt

46.356 kDa

pI

5.1 (calculated)

Extinction coefficient

16,390 - 17,265 (calc based on 11 Y, 0 W, and 7 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0A6H1

Domain

12..51

PF06689 ClpX C4-type zinc finger

PMID:19920124

Domain

110..311

PF07724 AAA domain (Cdc48 subfamily)

PMID:19920124

Domain

317..408

PF10431 C-terminal, D2-small domain, of ClpB protein

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=clpX taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128423

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945083

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001517

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A6H1

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10159

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10159

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945083

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000155

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0157

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

7.31E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

E. coli K-12 MG1655

5857

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

2475

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

3870

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

clpPX

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:456630..456670 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0438 (EcoliWiki Page)

NCBI GEO profiles for clpX

microarray

GenExpDB:b0438 (EcoliWiki Page)

Summary of data for clpX from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (456434..456661) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ20; Well:A8[7]

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Notes

Accessions Related to clpX Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10159

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0157

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0438

EcoGene

EcoGene:EG10159

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000155

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001517

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000028289 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000031124 (score: 1.000; bootstrap: 96%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G53350 (score: 1.000; bootstrap: 100%)
  • AT1G33360 (score: 0.317)
  • AT5G49840 (score: 0.220)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000011038 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00032922 (score: 1.000; bootstrap: 100%)
  • WBGene00026894 (score: 0.101)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00008412 (score: 1.000; bootstrap: 100%)
  • WBGene00019461 (score: 0.107)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000025235 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000011306 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040912-143 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040912-145 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0038745 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18242-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000011790 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000300107 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000008831 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000012965 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1346017 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q5N8G6 (score: 1.000; bootstrap: 100%)
  • Q6Z7F0 (score: 0.408)
  • Q6KAC2 (score: 0.332)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000012262 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000050010 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YBR227C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000132380 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00025589001 (score: 1.000; bootstrap: 100%)
  • GSTENP00003285001 (score: 0.186)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000036073 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

CLPX

From SHIGELLACYC

E. coli O157

CLPX

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Panther (EcoliWiki Page)

PTHR11262:SF4

Superfamily (EcoliWiki Page)

SUPERFAMILY:57716

Pfam (EcoliWiki Page)

PF06689 ClpX C4-type zinc finger

Pfam (EcoliWiki Page)

PF07724 AAA domain (Cdc48 subfamily)

Pfam (EcoliWiki Page)

PF10431 C-terminal, D2-small domain, of ClpB protein

EcoCyc

EcoCyc:EG10159

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10159

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000155

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0157

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001517

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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