clpP:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Standard Name

clpP

Gene Synonym(s)

ECK0431, b0437, JW0427, F21.5 gene, LopP, wseA[1], lopP, wseA

Product Desc.

ClpP[2][3];

Component of ClpP serine protease[3]; ClpAXP[3]; ClpXP[3]; ClpAP[3]

Proteolytic subunit of ClpXP and ClpAP ATP-dependent proteases; protease Ti[4]

Product Synonyms(s)

proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases[1], B0437[2][1], LopP[2][1], heat shock protein F21.5[2][1] , ECK0431, JW0427, lopP, wseA, b0437

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): clpPX[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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ClpP can simultaneously bind ClpX and ClpA to form a heteromeric complex. Binds TrxA (Kumar, 2004).[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

clpP

Mnemonic

Caseinolytic protease

Synonyms

ECK0431, b0437, JW0427, F21.5 gene, LopP, wseA[1], lopP, wseA

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

9.83 minutes 

MG1655: 455901..456524
<gbrowseImage> name=NC_000913:455901..456524 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 427382..428005
<gbrowseImage> name=NC_012967:427382..428005 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 358660..359283
<gbrowseImage> name=NC_012759:358660..359283 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 455901..456524
<gbrowseImage> name=NC_007779:455901..456524 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 395232..395855
<gbrowseImage> name=NC_010473:395232..395855 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

455943

Edman degradation

PMID:2197275


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

clpP(del) (Keio:JW0427)

deletion

deletion

PMID:16738554

Shigen

CGSC8590[5]

clpP(del)::kan

deletion

Biolog:respiration

unable to respire D-Galacturonate

PMID:16095938

clpP(del)::kan

deletion

Biolog:respiration

unable to respire D-Glucuronate

PMID:16095938

clpP(del)::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938

clpP(del)::kan

deletion

Biolog:respiration

unable to respire a-Hydroxybutyrate

PMID:16095938

clpP(del)::kan

deletion

Biolog:respiration

unable to respire a-Ketoglutarate

PMID:16095938

clpP(del)::kan

deletion

Biolog:respiration

unable to respire DL-Lactate

PMID:16095938

clpP(del)::kan

deletion

Biolog:respiration

unable to respire Succinate

PMID:16095938

clpP(del)::kan

deletion

Biolog:respiration

unable to respire Bromosuccinate

PMID:16095938

clpP(del)::kan

deletion

Biolog:respiration

unable to respire Glucuronamide

PMID:16095938

clpP(del)::kan

deletion

Biolog:respiration

unable to respire L-Alanine

PMID:16095938

clpP(del)::kan

deletion

Biolog:respiration

unable to respire L-Alanyl-glycine

PMID:16095938

clpP(del)::kan

deletion

Biolog:respiration

unable to respire L-Asparagine

PMID:16095938

clpP(del)::kan

deletion

Biolog:respiration

unable to respire L-Aspartate

PMID:16095938

clpP(del)::kan

deletion

Biolog:respiration

unable to respire L-Serine

PMID:16095938

clpP101(del-ins)::cat

PMID:2197275

CGSC:90917

clpP723(del)::kan

PMID:16738554

CGSC:100340


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Notes

Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0427

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCTCATACAGCGGCGAACGAGA

Primer 2:CCATTACGATGGGTCAGAATCGA

3B6

Kohara Phage

Genobase

PMID:3038334

tsx-247::Tn10

Linked marker

CAG12148 = CGSC7337[5]

est. P1 cotransduction: 40% [6]

zaj-3054::Tn10

Linked marker

CAG12017 = CGSC7339[5]

est. P1 cotransduction: 89% [6]
Synonyms:zba-3054::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10158

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10158

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000154

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945082

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0156

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001515

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

ClpP

Synonyms

proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases[1], B0437[2][1], LopP[2][1], heat shock protein F21.5[2][1] , ECK0431, JW0427, lopP, wseA, b0437

Product description

ClpP[2][3];

Component of ClpP serine protease[3]; ClpAXP[3]; ClpXP[3]; ClpAP[3]

Proteolytic subunit of ClpXP and ClpAP ATP-dependent proteases; protease Ti[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0004252

serine-type endopeptidase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00444

F

Seeded from EcoCyc (v14.0)

complete

GO:0004252

serine-type endopeptidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001907

F

Seeded from EcoCyc (v14.0)

complete

GO:0004252

serine-type endopeptidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018215

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005829

cytosol

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0006508

proteolysis

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00444

P

Seeded from EcoCyc (v14.0)

complete

GO:0006508

proteolysis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001907

P

Seeded from EcoCyc (v14.0)

complete

GO:0006508

proteolysis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018215

P

Seeded from EcoCyc (v14.0)

complete

GO:0006515

misfolded or incompletely synthesized protein catabolic process

PMID:10754102

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc (v14.0)

complete

GO:0006950

response to stress

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0346

P

Seeded from EcoCyc (v14.0)

complete

GO:0008233

peptidase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0645

F

Seeded from EcoCyc (v14.0)

complete

GO:0009408

response to heat

PMID:8349564

IEP: Inferred from Expression Pattern

P

complete

GO:0008236

serine-type peptidase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0720

F

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of ClpP serine protease

could be indirect

Protein

groL

PMID:15690043

Experiment(s):EBI-884584, EBI-891481

Protein

narG

PMID:15690043

Experiment(s):EBI-884584

Protein

narZ

PMID:15690043

Experiment(s):EBI-884584

Protein

parE

PMID:15690043

Experiment(s):EBI-884584

Protein

recA

PMID:15690043

Experiment(s):EBI-884584

Protein

hldD

PMID:15690043

Experiment(s):EBI-884584, EBI-891481

Protein

rho

PMID:15690043

Experiment(s):EBI-884584

Protein

rplJ

PMID:15690043

Experiment(s):EBI-884584

Protein

rplM

PMID:15690043

Experiment(s):EBI-884584

Protein

rplS

PMID:15690043

Experiment(s):EBI-884584

Protein

rpoC

PMID:15690043

Experiment(s):EBI-884584

Protein

rpsG

PMID:15690043

Experiment(s):EBI-884584, EBI-891481

Protein

rpsJ

PMID:15690043

Experiment(s):EBI-884584

Protein

secA

PMID:15690043

Experiment(s):EBI-884584

Protein

tufA

PMID:15690043

Experiment(s):EBI-884584, EBI-891481

Protein

aceE

PMID:15690043

Experiment(s):EBI-884584

Protein

agaI

PMID:15690043

Experiment(s):EBI-884584

Protein

yegL

PMID:15690043

Experiment(s):EBI-884584

Protein

clpA

PMID:15690043

Experiment(s):EBI-884584

Protein

dnaK

PMID:15690043

Experiment(s):EBI-884584

Protein

dsbG

PMID:15690043

Experiment(s):EBI-884584

Protein

greA

PMID:15690043

Experiment(s):EBI-884584

Protein

gyrA

PMID:15690043

Experiment(s):EBI-884584

Protein

hsdR

PMID:15690043

Experiment(s):EBI-884584

Protein

degP

PMID:15690043

Experiment(s):EBI-884584

Protein

lon

PMID:15690043

Experiment(s):EBI-884584

Protein

metK

PMID:15690043

Experiment(s):EBI-884584

Protein

rplE

PMID:15690043

Experiment(s):EBI-884584

Protein

ydiH

PMID:15690043

Experiment(s):EBI-891481

Protein

kefC

PMID:15690043

Experiment(s):EBI-891481

Protein

mtlA

PMID:15690043

Experiment(s):EBI-891481

Protein

rplA

PMID:15690043

Experiment(s):EBI-891481

Protein

rplC

PMID:15690043

Experiment(s):EBI-891481

Protein

rplD

PMID:15690043

Experiment(s):EBI-891481

Protein

rplL

PMID:15690043

Experiment(s):EBI-891481

Protein

rplU

PMID:15690043

Experiment(s):EBI-891481

Protein

rpmB

PMID:15690043

Experiment(s):EBI-891481

Protein

rpmC

PMID:15690043

Experiment(s):EBI-891481

Protein

rpmG

PMID:15690043

Experiment(s):EBI-891481

Protein

rpsB

PMID:15690043

Experiment(s):EBI-891481

Protein

rpsF

PMID:15690043

Experiment(s):EBI-891481

Protein

rpsP

PMID:15690043

Experiment(s):EBI-891481

Protein

ugpB

PMID:15690043

Experiment(s):EBI-891481

Protein

yfiF

PMID:15690043

Experiment(s):EBI-891481

Protein

yjgD

PMID:15690043

Experiment(s):EBI-891481

Protein

rplK

PMID:15690043

Experiment(s):EBI-891481

Protein

prs

PMID:16606699

Experiment(s):EBI-1136626

Protein

cheA

PMID:16606699

Experiment(s):EBI-1136626

Protein

yahN

PMID:16606699

Experiment(s):EBI-1136626

Protein

rhlE

PMID:16606699

Experiment(s):EBI-1136626

Protein

adk

PMID:16606699

Experiment(s):EBI-1136626

Protein

tig

PMID:16606699

Experiment(s):EBI-1136626

Protein

groL

PMID:16606699

Experiment(s):EBI-1136626

Protein

rho

PMID:16606699

Experiment(s):EBI-1136626

Protein

yehC

PMID:16606699

Experiment(s):EBI-1136626

Protein

clpX

PMID:16606699

Experiment(s):EBI-1136626

Protein

slyD

PMID:16606699

Experiment(s):EBI-1136626

Protein

mutL

PMID:16606699

Experiment(s):EBI-1136626

Protein

flgA

PMID:16606699

Experiment(s):EBI-1136626

Protein

tatE

PMID:16606699

Experiment(s):EBI-1136626

Protein

basR

PMID:16606699

Experiment(s):EBI-1136626

Protein

rnhA

PMID:16606699

Experiment(s):EBI-1136626

Protein

rhsE

PMID:16606699

Experiment(s):EBI-1136626

Protein

gfcD

PMID:16606699

Experiment(s):EBI-1136626

Protein

groL

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):17.053160

Protein

rraB

PMID:19402753

LCMS(ID Probability):99.0

Protein

groS

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):17.053160

Protein

rfaD

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):39.472640

Protein

yegL

PMID:19402753

MALDI(Z-score):17.053160

Protein

ydiH

PMID:19402753

LCMS(ID Probability):99.0

Protein

degP

PMID:19402753

MALDI(Z-score):17.053160

Protein

kefC

PMID:19402753

LCMS(ID Probability):99.0

Protein

agaI

PMID:19402753

MALDI(Z-score):17.053160

Protein

mtlA

PMID:19402753

LCMS(ID Probability):99.0

Protein

Subunits of ClpAXP

could be indirect

Protein

Subunits of ClpXP

could be indirect

Protein

Subunits of ClpAP

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSYSGERDNF APHMALVPMV IEQTSRGERS FDIYSRLLKE RVIFLTGQVE DHMANLIVAQ
MLFLEAENPE KDIYLYINSP GGVITAGMSI YDTMQFIKPD VSTICMGQAA SMGAFLLTAG
AKGKRFCLPN SRVMIHQPLG GYQGQATDIE IHAREILKVK GRMNELMALH TGQSLEQIER
DTERDRFLSA PEAVEYGLVD SILTHRN
Length

207

Mol. Wt

23.186 kDa

pI

5.5 (calculated)

Extinction coefficient

10,430 - 10,680 (calc based on 7 Y, 0 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

25..206

PF00574 Clp protease

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=clpP taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

<protect>

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128422

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945082

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001515

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A6G7

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10158

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10158

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945082

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000154

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0156

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

2.83E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

434.101+/-1.851

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.58741+/-0.02372

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

0.237560193

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

6334

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

3256

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

6694

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

clpPX

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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:455881..455921 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0437 (EcoliWiki Page)

NCBI GEO profiles for clpP

microarray

GenExpDB:b0437 (EcoliWiki Page)

Summary of data for clpP from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (455584..455927) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ20; Well:H10[7]

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Notes

Accessions Related to clpP Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10158

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0156

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0437

EcoGene

EcoGene:EG10158

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000154

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001515

Escherichia coli str. K-12 substr. MG1655

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000017225 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000018642 (score: 1.000; bootstrap: 61%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G23140 (score: 1.000; bootstrap: 67%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000019577 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00024182 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00014172 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000027588 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000009319 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050522-386 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050522-386 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0032229 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18618-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000245816 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000029726 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1858213 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q7XKK0 (score: 1.000; bootstrap: 90%)
  • Q6H7I9 (score: 0.534)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000017622 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000156314 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00026161001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000036072 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

CLPP

From SHIGELLACYC

E. coli O157

CLPP

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00574 Clp protease

Superfamily (EcoliWiki Page)

SUPERFAMILY:52096

Panther (EcoliWiki Page)

PTHR10381:SF3

EcoCyc

EcoCyc:EG10158

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10158

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000154

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0156

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001515

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

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