proA:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

proA

Gene Synonym(s)

ECK0244, b0243, JW0233, pro1, pro(1)[1], pro

Product Desc.

ProA[2][3];

Component of glutamate-5-semialdehyde dehydrogenase[2][3]; γ-glutamyl kinase-GP-reductase multienzyme complex[2][3]

gamma-Glutamyl phosphate reductase, proline biosynthesis[4]

Product Synonyms(s)

gamma-glutamylphosphate reductase[1], B0243[2][1], ProA[2][1] , ECK0244, JW0233, pro, b0243

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): proBA[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

proA

Mnemonic

Proline

Synonyms

ECK0244, b0243, JW0233, pro1, pro(1)[1], pro

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

5.62 minutes 

MG1655: 260727..261980
<gbrowseImage> name=NC_000913:260727..261980 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 265995..267248
<gbrowseImage> name=NC_012967:265995..267248 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 260726..261979
<gbrowseImage> name=NC_012759:260726..261979 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 260727..261980
<gbrowseImage> name=NC_007779:260727..261980 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 234831..236084
<gbrowseImage> name=NC_010473:234831..236084 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

260727

Edman degradation

PMID:6089111


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔproA (Keio:JW0233)

deletion

deletion

Auxotrophies

Requires proline for growth

PMID:16738554

Shigen

CGSC8468[5]

proA::Tn5KAN-2 (FB20067)

Insertion at nt 192 in Plus orientation

Auxotrophies

Requires proline for growth

PMID:15262929

E. coli Genome Project:FB20067

does not contain pKD46

proA81::Tn10

Insertion at 261,286 bp in MG1655 (NC_000913)

Auxotrophies

Requires proline for growth

adapted from Nichols et al.[6]

CAG18447 = CGSC7330[5]

Synonyms:

proA761(del)::kan

insertion

insertion

Auxotrophies

Requires proline for growth

proA23

Auxotrophies

Requires proline for growth

CGSC:5573

proA44

Auxotrophies

Requires proline for growth

CGSC:6453

proA81::Tn10

Auxotrophies

Requires proline for growth

PMID:9829956

CGSC:7088

proA35

Auxotrophies

Requires proline for growth

CGSC:8556

proA30

Auxotrophies

Requires proline for growth

CGSC:11535

proA181

Auxotrophies

Requires proline for growth

CGSC:12290

proA180

Auxotrophies

Requires proline for growth

CGSC:12291

proA

Auxotrophies

Requires proline for growth

CGSC:14522

proA3096::Tn10kan

Auxotrophies

Requires proline for growth

PMID:2540407 PMID:9829956

CGSC:38994

ΔproA761::kan

deletion

deletion

Auxotrophies

Requires proline for growth

PMID:16738554

CGSC:102466

proA

Resistant to

Resistant to Nitro(4)pyridine N-oxide

PMID:4598010

proA

Resistant to

Nitro-4-pyridine N-oxide Resistance

PMID:385587

Strain: W3630

table 1

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0233

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCCTGGAACAAATGGGCATTGC

Primer 2:CCCGCACGAATGGTGTAATCACC

8F9

Kohara Phage

Genobase

PMID:3038334

8G4

Kohara Phage

Genobase

PMID:3038334

yafC502::Tn10

Linked marker

CAG18436 = CGSC7328[5]

est. P1 cotransduction: 33% [6]
Synonyms:zae-502::Tn10

lacI3042::Tn10

Linked marker

CAG18439 = CGSC7334[5]

est. P1 cotransduction: % [6]
Synonyms:lacI42::Tn10 nnnCAG18439 also carries lacZ118(0c) (CGSC).

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10767

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10767

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000758

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946680

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0760

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000832

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

ProA

Synonyms

gamma-glutamylphosphate reductase[1], B0243[2][1], ProA[2][1] , ECK0244, JW0233, pro, b0243

Product description

ProA[2][3];

Component of glutamate-5-semialdehyde dehydrogenase[2][3]; γ-glutamyl kinase-GP-reductase multienzyme complex[2][3]

gamma-Glutamyl phosphate reductase, proline biosynthesis[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0004350

glutamate-5-semialdehyde dehydrogenase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00412

F

Seeded from EcoCyc (v14.0)

complete

GO:0004350

glutamate-5-semialdehyde dehydrogenase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000965

F

Seeded from EcoCyc (v14.0)

complete

GO:0004350

glutamate-5-semialdehyde dehydrogenase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012134

F

Seeded from EcoCyc (v14.0)

complete

GO:0004350

glutamate-5-semialdehyde dehydrogenase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020593

F

Seeded from EcoCyc (v14.0)

complete

GO:0004350

glutamate-5-semialdehyde dehydrogenase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.2.1.41

F

Seeded from EcoCyc (v14.0)

complete

GO:0004350

glutamate-5-semialdehyde dehydrogenase activity

PMID:6337636

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0004350

glutamate-5-semialdehyde dehydrogenase activity

PMID:7034716

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0004350

glutamate-5-semialdehyde dehydrogenase activity

PMID:7035170

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00412

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006561

proline biosynthetic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00412

P

Seeded from EcoCyc (v14.0)

complete

GO:0006561

proline biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000965

P

Seeded from EcoCyc (v14.0)

complete

GO:0006561

proline biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012134

P

Seeded from EcoCyc (v14.0)

complete

GO:0006561

proline biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020593

P

Seeded from EcoCyc (v14.0)

complete

GO:0006561

proline biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0641

P

Seeded from EcoCyc (v14.0)

complete

GO:0006561

proline biosynthetic process

PMID:6089111

IGI: Inferred from Genetic Interaction

P

Seeded from EcoCyc (v14.0)

Missing: with/from

GO:0050661

NADP or NADPH binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012134

F

Seeded from EcoCyc (v14.0)

complete

GO:0050661

NADP or NADPH binding

PMID:7034716

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012134

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015590

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016161

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016162

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of glutamate-5-semialdehyde dehydrogenase

could be indirect

Protein

aceE

PMID:15690043

Experiment(s):EBI-888834

Protein

dnaN

PMID:15690043

Experiment(s):EBI-888834

Protein

rapA

PMID:16606699

Experiment(s):EBI-1136008

Protein

yhhH

PMID:16606699

Experiment(s):EBI-1136008

Protein

ptrA

PMID:16606699

Experiment(s):EBI-1136008

Protein

iscS

PMID:16606699

Experiment(s):EBI-1136008

Protein

yghO

PMID:15690043

Experiment(s):EBI-893980

Protein

cysA

PMID:15690043

Experiment(s):EBI-893980

Protein

lpxD

PMID:15690043

Experiment(s):EBI-893980

Protein

proS

PMID:15690043

Experiment(s):EBI-893980

Protein

sfsA

PMID:15690043

Experiment(s):EBI-893980

Protein

ugpB

PMID:15690043

Experiment(s):EBI-893980

Protein

yehT

PMID:15690043

Experiment(s):EBI-893980

Protein

proS

PMID:19402753

LCMS(ID Probability):99.0

Protein

cysA

PMID:19402753

LCMS(ID Probability):99.0

Protein

yehT

PMID:19402753

LCMS(ID Probability):99.0

Protein

sfsA

PMID:19402753

LCMS(ID Probability):99.0

Protein

Subunits of γ-glutamyl kinase-GP-reductase multienzyme complex

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MLEQMGIAAK QASYKLAQLS SREKNRVLEK IADELEAQSE IILNANAQDV ADARANGLSE
AMLDRLALTP ARLKGIADDV RQVCNLADPV GQVIDGGVLD SGLRLERRRV PLGVIGVIYE
ARPNVTVDVA SLCLKTGNAV ILRGGKETCR TNAATVAVIQ DALKSCGLPA GAVQAIDNPD
RALVSEMLRM DKYIDMLIPR GGAGLHKLCR EQSTIPVITG GIGVCHIYVD ESVEIAEALK
VIVNAKTQRP STCNTVETLL VNKNIADSFL PALSKQMAES GVTLHADAAA LAQLQAGPAK
VVAVKAEEYD DEFLSLDLNV KIVSDLDDAI AHIREHGTQH SDAILTRDMR NAQRFVNEVD
SSAVYVNAST RFTDGGQFGL GAEVAVSTQK LHARGPMGLE ALTTYKWIGI GDYTIRA
Length

417

Mol. Wt

44.629 kDa

pI

5.4 (calculated)

Extinction coefficient

17,420 - 18,295 (calc based on 8 Y, 1 W, and 7 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

2..304

PF00171 Aldehyde dehydrogenase family

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=proA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128229

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946680

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000832

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P07004

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10767

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10767

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946680

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000758

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0760

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

4.53E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

50.991+/-0.327

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.139664804

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

2289

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

803

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

1705

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

proBA

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:260707..260747 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0243 (EcoliWiki Page)

NCBI GEO profiles for proA

microarray

GenExpDB:b0243 (EcoliWiki Page)

Summary of data for proA from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to proA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10767

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0760

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0243

EcoGene

EcoGene:EG10767

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000758

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000832

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000021964 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000025082 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G39800 (score: 1.000; bootstrap: 100%)
  • AT3G55610 (score: 0.881)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000015703 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00023569 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00011938 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000012293 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000005241 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0037146 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA20377-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000017112 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000265984 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000004139 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000006160 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1888908 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q58QF6 (score: 1.000; bootstrap: 100%)
  • Q53UC8 (score: 0.988)
  • Q60EM4 (score: 0.866)
  • Q6PW76 (score: 0.862)
  • O04226 (score: 0.862)
  • Q941T1 (score: 0.727)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000004870 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000020940 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YOR323C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC8211 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000177909 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000136898 (score: 0.766)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00006945001 (score: 1.000; bootstrap: 100%)
  • GSTENP00025100001 (score: 0.737)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000041838 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

PROA

From SHIGELLACYC

E. coli O157

PROA

From ECOO157CYC

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Notes

Families

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Database Accession Notes

Pfam (EcoliWiki Page)

PF00171 Aldehyde dehydrogenase family


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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 6.2 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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