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W3110: 458112..460466<br /><gbrowseImage>
W3110: 458112..460466<br /><gbrowseImage>
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{{GBrowseLink|W3110|AC_000091|457112|461466|GBrowse(W3110)}}  
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{{GBrowseFastaLink|W3110|AC_000091|458112|460466|FASTA Dump}}  
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="K46a9b0812e7ef"  class=" tableEdit Gene_sequence_features_table"   
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{| {{Prettytable}} id="B46a9b0819d2ea"  class=" tableEdit Gene_allele_table dataTable"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="B46a9b0819d2ea"  class=" tableEdit Gene_allele_table dataTable"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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&Delta;lon (Keio:JW0429)
''lon(del)'' (Keio:JW0429)
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deletion
deletion
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PMID:16738554
PMID:16738554
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[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]<br>[http://cgsc2.biology.yale.edu/Strain.php?ID=106873 CGSC8592]<ref name='LIB:cgsc'/>  
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]
 
[http://cgsc2.biology.yale.edu/Strain.php?ID=106873 CGSC8592]<ref name='LIB:cgsc'/>  
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&Delta;lon::kan
''lon(del)''::kan
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deletion
deletion
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&Delta;lon::kan
''lon(del)''::kan
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deletion
deletion
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&Delta;lon::kan
''lon(del)''::kan
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deletion
deletion
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&Delta;lon::kan
''lon(del)''::kan
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deletion
deletion
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&Delta;lon::kan
''lon(del)''::kan
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deletion
deletion
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&Delta;lon::kan
''lon(del)''::kan
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deletion
deletion
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&Delta;lon::kan
''lon(del)''::kan
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deletion
deletion
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&Delta;lon::kan
''lon(del)''::kan
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deletion
deletion
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&Delta;lon::kan
''lon(del)''::kan
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deletion
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&Delta;lon::kan
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deletion
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&Delta;lon::kan
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deletion
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&Delta;lon::kan
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deletion
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&Delta;lon::kan
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deletion
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&Delta;lon::kan
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deletion
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&Delta;lon::kan
''lon(del)''::kan
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deletion
deletion
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&Delta;lon::kan
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deletion
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&Delta;lon::kan
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deletion
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&Delta;lon::kan
''lon(del)''::kan
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deletion
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&Delta;lon::kan
''lon(del)''::kan
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deletion
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&Delta;lon::kan
''lon(del)''::kan
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deletion
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&Delta;lon::kan
''lon(del)''::kan
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deletion
deletion
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&Delta;lon::kan
''lon(del)''::kan
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deletion
deletion
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''&#916;lon-725::kan''
''lon-725(del)''::kan
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fig 2  
fig 2  
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''lon-''
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Irradiated with UV light.
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Growth Phenotype
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Filament formation was reduced after being Irradiated.
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PMID 5335887
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Strain AX14 was used. See Figure 1. 
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''Ion-''
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Irradiation strain in YET agar plates.
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Colony Morphology
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Once exposed to UV radiation colony formation by the mutant cells was not observed.
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PMID:5335887
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See Fig 3. D
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''lon-''
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Moved from YET broth to Glucose minimal agar
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Growth Phenotype
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The Lesions caused by the UV radiation were repaired.
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PMID:5335887
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See Figure 4. 
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''lon-''
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Puromycin addition
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Protein Synthesis
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Puromycin's inhibited L-arginine-''UL-C'' incorporation by AX14 almost immediately, taking 25 minutes to complete
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PMID:5335887
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See figure 6
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''lon725(del)''::FRT
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deletion
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Mutagenesis
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Decrease in stress induced mutagenesis (SIM).
|
PMID:23224554
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Parent Strain: SMR4562
Experimental Strain: SMR12254
|
The mutation conferred a decrease in SIM with a reduction in mutant frequency by over 90 percent. See table S3 for full experimental data. 
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''lon725(del)''::FRT
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deletion
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Sensitivity to
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SDS-EDTA sensitivity
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PMID:23224554
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Parent Strain: SMR4562
Experimental Strain: SMR12254
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The mutation conferred increased sensitivity toward SDS-EDTA. See table S7 and S1 for summary of experimental data. 
|-
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''lon725(del)''::FRT
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deletion
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Sensitivity to
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UV sensitivity
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PMID:23224554
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Parent Strain: SMR4562
Experimental Strain: SMR12254
|
The mutation conferred increased sensitivity to UV. See table S7 and S1 for summary of experimental data. 
|-
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CAG45114 ''lon725(del)''::FRTKanFR
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deletion
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Sigma<sup>E</sup> activity
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decrease in sigma<sup>E</sup> activity
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PMID:23224554
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Parental Strain: CAG45114
Experimental Strain: SMR15273
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See table S11 for full experimental results. 


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{|   id="E4e04be7fc8678"  class=" tableEdit Genetic_interaction_table dataTable"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E4e04be7fc8678"  class=" tableEdit Genetic_interaction_table dataTable"   
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{|   id="U46a9b0838316f"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U46a9b0838316f"  class=" tableEdit Gene_accessions_table"   
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
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EcoCyc:EG10542
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]  
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[[EcoGene]]
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10542 ECOCYC:EG10542]
EcoGene:EG10542
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Escherichia coli str. K-12 substr. MG1655  
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
[[RegulonDB]]
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[http://ecogene.org/geneinfo.php?eg_id=EG10542 EcoGene:EG10542]
RegulonDB:ECK120000535
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Escherichia coli str. K-12 substr. MG1655  
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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Escherichia coli str. K-12 substr. MG1655  
Escherichia coli str. K-12 substr. MG1655  
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[[EchoBASE]]
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EchoBASE:EB0537
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
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ASAP:ABE-0001521
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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!|Name!!URL!!Comments
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Latest revision as of 20:30, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

lon

Mnemonic

Long form

Synonyms

ECK0433, b0439, JW0429, capR, deg, dir, muc, lopA[1], lonA, lopA

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

9.87 minutes 

MG1655: 458112..460466
<gbrowseImage> name=NC_000913:458112..460466 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 430943..433297
<gbrowseImage> name=NC_012967:430943..433297 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 360871..363225
<gbrowseImage> name=NC_012759:360871..363225 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 458112..460466
<gbrowseImage> name=NC_007779:458112..460466 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 397443..399797
<gbrowseImage> name=NC_010473:397443..399797 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

458112

Edman degradation

PMID:2984174[2]
PMID:8294008[3]


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

lon(del) (Keio:JW0429)

deletion

deletion

PMID:16738554[4]

Shigen

CGSC8592[5]

lon::Tn5KAN-2 (FB20175)

Insertion at nt 1865 in Minus orientation

PMID:15262929[6]

E. coli Genome Project:FB20175

does not contain pKD46

lonK362A

K362A

Loss of proteolytic activity and ATP-binding

seeded from UniProt:P0A9M0

lonS679A

S679A

Loss of proteolytic activity

seeded from UniProt:P0A9M0

lon(del)::kan

deletion

Biolog:respiration

unable to respire Dextrin

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire D-Mannose

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire b-Methyl-D-glucoside

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire DL-a-Glycerol

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire D-Galactoniate

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire D-Galacturonate

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire D-Glucuronate

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire a-Hydroxybutyrate

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire a-Ketobutyrate

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire a-Ketoglutarate

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire DL-Lactate

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire Succinate

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire Bromosuccinate

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire Glucuronamide

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire L-Alanine

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire L-Alanyl-glycine

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire L-Asparagine

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire L-Aspartate

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire Glycyl-L-aspartate

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire L-Serine

PMID:16095938[7]

lon(del)::kan

deletion

Biolog:respiration

unable to respire Uridine

PMID:16095938[7]

lon-11

CGSC:4788

lon-21

CGSC:5770

lon-22

CGSC:6957

lon-1::IS186

CGSC:7591

lon-20

CGSC:7652

lon-10

CGSC:7752

lon-6

CGSC:9311

lon-7

CGSC:9313

lon-9

CGSC:11065

lon-201

CGSC:19616

lon-202

CGSC:19617

lon-725(del)::kan

PMID:16738554[4]

CGSC:101680

capR9

  • mucoidy
  • radiation sensitivity

PMID:17248613[8]

capR9

derepression of UDPG pyrophosphorylase

PMID:4910851[9]

lon

deletion

Sensitivity to

increases sensitivity to bicyclomycin

PMID:21357484[10]

fig 2

lon-

Irradiated with UV light.

Growth Phenotype

Filament formation was reduced after being Irradiated.

PMID 5335887

Strain AX14 was used. See Figure 1.

Ion-

Irradiation strain in YET agar plates.

Colony Morphology

Once exposed to UV radiation colony formation by the mutant cells was not observed.

PMID:5335887[11]

See Fig 3. D

lon-

Moved from YET broth to Glucose minimal agar

Growth Phenotype

The Lesions caused by the UV radiation were repaired.

PMID:5335887[11]

See Figure 4.

lon-

Puromycin addition

Protein Synthesis

Puromycin's inhibited L-arginine-UL-C incorporation by AX14 almost immediately, taking 25 minutes to complete

PMID:5335887[11]

See figure 6

lon725(del)::FRT

deletion

Mutagenesis

Decrease in stress induced mutagenesis (SIM).

PMID:23224554[12]

Parent Strain: SMR4562 Experimental Strain: SMR12254

The mutation conferred a decrease in SIM with a reduction in mutant frequency by over 90 percent. See table S3 for full experimental data.

lon725(del)::FRT

deletion

Sensitivity to

SDS-EDTA sensitivity

PMID:23224554[12]

Parent Strain: SMR4562 Experimental Strain: SMR12254

The mutation conferred increased sensitivity toward SDS-EDTA. See table S7 and S1 for summary of experimental data.

lon725(del)::FRT

deletion

Sensitivity to

UV sensitivity

PMID:23224554[12]

Parent Strain: SMR4562 Experimental Strain: SMR12254

The mutation conferred increased sensitivity to UV. See table S7 and S1 for summary of experimental data.

CAG45114 lon725(del)::FRTKanFR

deletion

SigmaE activity

decrease in sigmaE activity

PMID:23224554[12]

Parental Strain: CAG45114 Experimental Strain: SMR15273

See table S11 for full experimental results.

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0429

Plasmid clone

Shigen

PMID:16769691[13]

Status:Clone OK

Primer 1:GCCAATCCTGAGCGTTCTGAACG

Primer 2:CCTTTTGCAGTCACAACCTGCAT

3B6

Kohara Phage

Genobase

PMID:3038334[14]

tsx-247::Tn10

Linked marker

CAG12148 = CGSC7337[5]

est. P1 cotransduction: 36% [15]

zaj-3054::Tn10

Linked marker

CAG12017 = CGSC7339[5]

est. P1 cotransduction: 96% [15]
Synonyms:zba-3054::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10542

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10542

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000535

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945085

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0537

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001521

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Gayda, RC et al. (1985) Regulatory region of the heat shock-inducible capR (lon) gene: DNA and protein sequences. J. Bacteriol. 162 271-5 PubMed
  3. ↑ Thomas, CD et al. (1993) Controlled high-level expression of the lon gene of Escherichia coli allows overproduction of Lon protease. Gene 136 237-42 PubMed
  4. ↑ 4.0 4.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 7.15 7.16 7.17 7.18 7.19 7.20 7.21 Ito, M et al. (2005) Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays. Metab. Eng. 7 318-27 PubMed
  8. ↑ Bush, JW & Markovitz, A (1973) The Genetic Basis for Mucoidy and Radiation Sensitivity in capR (lon) Mutants of E. coli K-12. Genetics 74 215-25 PubMed
  9. ↑ Lieberman, MM et al. (1970) Derepression of GDP-alpha-mannose and UDP-glucose pyrophosphorylases by a regulator gene mutation; episomal dominance in partial diploids. Proc. Natl. Acad. Sci. U.S.A. 65 625-32 PubMed
  10. ↑ Tran, L et al. (2011) Single-gene deletion mutants of Escherichia coli with altered sensitivity to bicyclomycin, an inhibitor of transcription termination factor Rho. J. Bacteriol. 193 2229-35 PubMed
  11. ↑ 11.0 11.1 11.2 Walker, JR & Pardee, AB (1967) Conditional mutations involving septum formation in Escherichia coli. J. Bacteriol. 93 107-14 PubMed
  12. ↑ 12.0 12.1 12.2 12.3 Al Mamun, AA et al. (2012) Identity and function of a large gene network underlying mutagenic repair of DNA breaks. Science 338 1344-8 PubMed
  13. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  14. ↑ Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  15. ↑ 15.0 15.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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