rep:Gene: Difference between revisions

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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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{| id="X46a9feac3337d"  class=" tableEdit Gene_nomenclature_table"   
{|   id="X46a9feac3337d"  class=" tableEdit Gene_nomenclature_table"   


|-
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!align=left {{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
||
||
''ECK3770, b3778, JW5604, dasC, mbrA, mmrA, dasC?''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK3770, b3778, JW5604, dasC, mbrA, mmrA, dasC?''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, mmrA?''


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*  
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****************************************************************************************** -->{{Gene_location_help}}
****************************************************************************************** -->{{Gene_location_help}}
{|   id="N46a9feacb6204"  class=" tableEdit Gene_location_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N46a9feacb6204"  class=" tableEdit Gene_location_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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85.32 minutes&nbsp;
85.32 minutes&nbsp;
|
|
MG1655: 3958700..3960721<br />{{GBrowseFigureByCoord|3958700|3960721|ecoli|MG1655}}
MG1655: 3958700..3960721<br /><gbrowseImage>
name=NC_000913:3958700..3960721
source=MG1655
preset=GeneLocation
</gbrowseImage>
 
|
|
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10837 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10837 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|3957700|3961721|GBrowse(MG1655)}}
{{GBrowseLink|MG1655|NC_000913|3957700|3961721|GBrowse(MG1655)}}
   
   
|
|
{{GBrowseFastaLink|ecoli|NC_000913|3958700|3960721|FASTA Dump}}
{{GBrowseFastaLink|MG1655|NC_000913|3958700|3960721|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10837 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=EG10837 EcoCyc Sequence Dump]  
|-  
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|
|
NC_012967: 3922479..3924500<br />{{GBrowseFigureByCoord|3922479|3924500|REL606|NC_012967}}
NC_012967: 3922479..3924500<br /><gbrowseImage>
name=NC_012967:3922479..3924500
source=REL606
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|REL606|NC_012967|3922479|3924500|GBrowse (REL606)}}
{{GBrowseLink|REL606|NC_012967|3922479|3924500|GBrowse (REL606)}}
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|-  
|-  
|
|
W3110
[[BW2952]]
|
|
&nbsp;
 
|
|
W3110: 3676004..3673983<br />{{GBrowseFigureByCoord|3673983|3676004|ecoli_W3110|W3110}}
NC_012759: 3848369..3850390<br /><gbrowseImage>
name=NC_012759:3848369..3850390
source=BW2952
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|ecoli_W3110|AC_000091|3672983|3677004|GBrowse(W3110)}}  
{{GBrowseLink|BW2952|NC_012759|3848369|3850390|GBrowse (BW2952)}}
|
|
{{GBrowseFastaLink|ecoli_W3110|AC_000091|3673983|3676004|FASTA Dump}}  
{{GBrowseFastaLink|BW2952|NC_012759|3848369|3850390|FASTA Dump}}  
|-  
|-  
|
|
[[DH10B]]
W3110
|
&nbsp;
|
|
W3110: 3676004..3673983<br /><gbrowseImage>
name=NC_007779:3673983..3676004
source=W3110
preset=GeneLocation
</gbrowseImage>


|
|
DH10B: 4057620..4059641<br />{{GBrowseFigureByCoord|4057620|4059641|ecoli_DH10B|DH10B}}
{{GBrowseLink|W3110|NC_007779|3672983|3677004|GBrowse(W3110)}}  
|
|
{{GBrowseLink|ecoli_DH10B|NC_010473|4053578|4063683|GBrowse(DH10B)}}
{{GBrowseFastaLink|W3110|NC_007779|3673983|3676004|FASTA Dump}}  
|
{{GBrowseFastaLink|ecoli_DH10B|NC_010473|4053578|4063683|FASTA Dump}}  
|-  
|-  
|
|
[[BW2952]]
[[DH10B]]
|
|


|
|
NC_012759: 3848369..3850390<br />{{GBrowseFigureByCoord|3848369|3850390|BW2952|NC_012759}}
DH10B: 4057620..4059641<br /><gbrowseImage>
name=NC_010473:4057620..4059641
source=DH10B
preset=GeneLocation
</gbrowseImage>
 
|
|
{{GBrowseLink|BW2952|012759|3848369|NC_3850390|GBrowse (BW2952)}}
{{GBrowseLink|DH10B|NC_010473|4053578|4063683|GBrowse(DH10B)}}
|
|
{{GBrowseFastaLink|BW2952|012759|3848369|NC_3850390|FASTA Dump}}  
{{GBrowseFastaLink|DH10B|NC_010473|4053578|4063683|FASTA Dump}}  


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****************************************************************************************** -->{{Gene_sequence_features_help}}
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{|   id="I46a9fead7adba"  class=" tableEdit Gene_sequence_features_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="I46a9fead7adba"  class=" tableEdit Gene_sequence_features_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
3958700
|
Edman degradation
|
PMID:2999067<br />
|


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|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.18115.I46a9fead7adba&page=18115&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table]</span> || || || || ||
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*  
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****************************************************************************************** -->{{Gene_alleles_help}}
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{| {{Prettytable}} id="Y46a9feadc506b"  class=" tableEdit Gene_allele_table dataTable"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Y46a9feadc506b"  class=" tableEdit Gene_allele_table dataTable"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-  
|-  
|
|
&Delta;rep (Keio:JW5604)
''rep(del)'' (Keio:JW5604)
|
|
deletion
deletion
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|-  
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|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0012344 rep::Tn5KAN]
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0012344 rep::Tn5KAN-I-SceI] (FB21451)
|
|
 
Insertion at nt 508 in Minus orientation
|
|


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|
|
PMID:12519969
PMID:15262929
|
|
[[asapstrains:ASAP|ASAP]]
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB21451]
|
|
At position 508 in Minus orientation, contains plasmid  [[pKD46]].<br />ASAP strain name: FB21451
contains [[pKD46]]  
|-  
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|
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|
|
unable to respire [[Carbon sources|a-Ketobutyrate]]
unable to respire [[Carbon sources|a-Ketobutyrate]]
|
PMID:16095938
|
|
|-
|
&Delta;rep::kan
|
deletion
|
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|a-Ketoglutarate]]
|
PMID:16095938
|
|
|-
|
&Delta;rep::kan
|
deletion
|
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|Succinate]]
|
PMID:16095938
|
|
|-
|
&Delta;rep::kan
|
deletion
|
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|Bromosuccinate]]
|
PMID:16095938
|
|
|-
|
&Delta;rep::kan
|
deletion
|
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|L-Alanine]]
|
PMID:16095938
|
|
|-
|
&Delta;rep::kan
|
deletion
|
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|L-Asparagine]]
|
PMID:16095938
|
|
|-
|
&Delta;rep::kan
|
deletion
|
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|L-Aspartate]]
|
PMID:16095938
|
|
|-
|
&Delta;rep::kan
|
deletion
|
|
[[Biolog]]:respiration
|
unable to respire [[Carbon sources|L-Serine]]
|
|
PMID:16095938
PMID:16095938
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|-  
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|
|
''&#916;rep-729::kan''
''rep-729(del)::kan''
|
|


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|-  
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|
|
&Delta;rep::kan
rep in [[MDS42]]
|
|
deletion
deletion
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|
|
[[Biolog]]:respiration
Sensitivity to
|
increased sensitivity to [[Bicyclomycin]]
|
PMID:21183718
|
 
|
Fig. 2
|-
|
mbrA4
|
 
|
 
|
Growth Phenotype
|
no growth in the first few hours at non-permissive conditions but eventually resumed growth, after exposed to LB cells began to elongate
LB-Mac-
|
PMID:2176633
|
 
|
|-
|
mbrA15
|
 
|
 
|
Growth Phenotype
|
|
unable to respire [[Carbon sources|a-Ketoglutarate]]
temperature sensitive, forms two distinct populations, one more dense and one less dense than wild type
|
|
PMID:16095938
PMID:2176633
|
|


|
|
   
   
|-
|
''mbrA4''
|
|
|
Resistant to
|
camphor resistance
|
PMID:2176633
PMID:1925019
|
|
Table 2 and table 1
|-
|
''mrbA15''
|
|
|
Resistant to
|
Resistant to camphor
|
PMID:2176633
PMID:1925019
|
|
table 2 and table 1


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===Notes===
===Notes===


==Genetic Interactions==
{{BacktoTop}}
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.18115.G4e04c23ae6338-->
<!--
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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G4e04c23ae6338"  class=" tableEdit Genetic_interaction_table dataTable" 
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.18115.G4e04c23ae6338&page=18115&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table]</span> || || || || || ||
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.18115.G4e04c23ae6338--></protect>
<!-- Genetic Interacdtions Notes -->
===Notes===


==Genetic Resources==
==Genetic Resources==
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{|   id="D46a9feae893d7"  class=" tableEdit Gene_resource_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="D46a9feae893d7"  class=" tableEdit Gene_resource_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
!|Resource!!Resource Type!!Source!!Notes/Reference
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Primer 2:CCTTTCCCTCGTTTTGCCGCCAT  
Primer 2:CCTTTCCCTCGTTTTGCCGCCAT  
|-
|
[[:Category:Kohara_Phage:2A8|2A8]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=556 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:2E6|2E6]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=557 Genobase]
|
PMID:3038334
|-  
|-  
|
|
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{|   id="J46a9feaf34a80"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J46a9feaf34a80"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10837 EcoCyc:EG10837]
EcoCyc:EG10837
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
[[EcoGene]]
|
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0830 EchoBASE:EB0830]
EcoGene:EG10837
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
[[RegulonDB]]
|
|
[http://chase.ou.edu/macro/searchlink.php?bnum=b3778 EcoliGenExpDB:b3778]
RegulonDB:ECK120000828
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]  
|-  
|
[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
|
[http://BioCyc.org/ECOL199310/new-image?object=C4698 ECOL199310CYC:C4698]
|
|-
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
|
[http://ecogene.org/geneinfo.php?eg_id=EG10837 EcoGene:EG10837]
|
|-  
|-  
|
|
[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://BioCyc.org/ECOO157/new-image?object=REP ECOO157CYC:REP]
[http://www.ncbi.nlm.nih.gov/gene?term=948292 GeneID:948292]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
|
[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])
[[EchoBASE]]
|
|
[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/303 CGSC:303]
EchoBASE:EB0830
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[[ASAP]]
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0012344&formSubmitReturn=1 ASAP:ABE-0012344]
ASAP:ABE-0012344
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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!|Name!!URL!!Comments
!|Name!!URL!!Comments

Latest revision as of 20:49, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

rep

Mnemonic

Replicase

Synonyms

ECK3770, b3778, JW5604, dasC, mbrA, mmrA, dasC?[1][2], mmrA?

edit table


Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

85.32 minutes 

MG1655: 3958700..3960721
<gbrowseImage> name=NC_000913:3958700..3960721 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3922479..3924500
<gbrowseImage> name=NC_012967:3922479..3924500 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3848369..3850390
<gbrowseImage> name=NC_012759:3848369..3850390 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3676004..3673983
<gbrowseImage> name=NC_007779:3673983..3676004 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4057620..4059641
<gbrowseImage> name=NC_010473:4057620..4059641 source=DH10B preset=GeneLocation </gbrowseImage>

edit table


Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

3958700

Edman degradation

PMID:2999067[3]


edit table


Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

rep(del) (Keio:JW5604)

deletion

deletion

PMID:16738554[4]

Shigen

rep::Tn5KAN-I-SceI (FB21451)

Insertion at nt 508 in Minus orientation

PMID:15262929[5]

E. coli Genome Project:FB21451

contains pKD46

Δrep::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938[6]

Δrep::kan

deletion

Biolog:respiration

unable to respire a-Hydroxybutyrate

PMID:16095938[6]

Δrep::kan

deletion

Biolog:respiration

unable to respire a-Ketobutyrate

PMID:16095938[6]

Δrep::kan

deletion

Biolog:respiration

unable to respire a-Ketoglutarate

PMID:16095938[6]

Δrep::kan

deletion

Biolog:respiration

unable to respire Succinate

PMID:16095938[6]

Δrep::kan

deletion

Biolog:respiration

unable to respire Bromosuccinate

PMID:16095938[6]

Δrep::kan

deletion

Biolog:respiration

unable to respire L-Alanine

PMID:16095938[6]

Δrep::kan

deletion

Biolog:respiration

unable to respire L-Asparagine

PMID:16095938[6]

Δrep::kan

deletion

Biolog:respiration

unable to respire L-Aspartate

PMID:16095938[6]

Δrep::kan

deletion

Biolog:respiration

unable to respire L-Serine

PMID:16095938[6]

rep-5

CGSC:7013

rep-3

PMID:383240[7]

CGSC:9794

rep-142(ts)

temperature sensitive

CGSC:90737

[rep-71]

PMID:6286604[8]

CGSC:90823

null allele

rep-729(del)::kan

PMID:16738554[4]

CGSC:113537

rep in MDS42

deletion

Sensitivity to

increased sensitivity to Bicyclomycin

PMID:21183718[9]

Fig. 2

mbrA4

Growth Phenotype

no growth in the first few hours at non-permissive conditions but eventually resumed growth, after exposed to LB cells began to elongate LB-Mac-

PMID:2176633[10]

mbrA15

Growth Phenotype

temperature sensitive, forms two distinct populations, one more dense and one less dense than wild type

PMID:2176633[10]

mbrA4

Resistant to

camphor resistance

PMID:2176633[10]

PMID:1925019[11]

Table 2 and table 1

mrbA15

Resistant to

Resistant to camphor

PMID:2176633[10]

PMID:1925019[11]

table 2 and table 1

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW5604

Plasmid clone

Shigen

PMID:16769691[12]

Status:cloned as old JW

Primer 1:GCCCGTCTAAACCCCGGCCAACA

Primer 2:CCTTTCCCTCGTTTTGCCGCCAT

2A8

Kohara Phage

Genobase

PMID:3038334[13]

2E6

Kohara Phage

Genobase

PMID:3038334[13]

ilvD500::Tn10

Linked marker

CAG18431 = CGSC7462[14]

est. P1 cotransduction: 83% [15]
Synonyms:ilv500::Tn10

metEo-3079::Tn10

Linked marker

CAG18491 = CGSC7464[14]

est. P1 cotransduction: 10% [15]
Synonyms:metE3079::Tn10 nnnThe Tn10 in CAG13491 is inserted in the metE regulatory region, but causes a Met- phenotype.

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10837

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10837

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000828

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948292

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0830

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012344

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ Bialkowska-Hobrzanska, H et al. (1985) Escherichia coli rep gene: identification of the promoter and N terminus of the rep protein. J. Bacteriol. 164 1004-10 PubMed
  4. ↑ 4.0 4.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  5. ↑ Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 Ito, M et al. (2005) Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays. Metab. Eng. 7 318-27 PubMed
  7. ↑ Takahashi, S et al. (1979) The rep mutation. VI. Purification and properties of the Escherichia coli rep protein, DNA helicase III. Can. J. Biochem. 57 855-66 PubMed
  8. ↑ Tessman, I et al. (1982) Relative map location of the rep and rho genes of Escherichia coli. J. Bacteriol. 151 1637-40 PubMed
  9. ↑ Washburn, RS & Gottesman, ME (2011) Transcription termination maintains chromosome integrity. Proc. Natl. Acad. Sci. U.S.A. 108 792-7 PubMed
  10. ↑ 10.0 10.1 10.2 10.3 Trun, NJ & Gottesman, S (1990) On the bacterial cell cycle: Escherichia coli mutants with altered ploidy. Genes Dev. 4 2036-47 PubMed
  11. ↑ 11.0 11.1 Trun, NJ & Gottesman, S () Characterization of Escherichia coli mutants with altered ploidy. Res. Microbiol. 142 195-200 PubMed
  12. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  13. ↑ 13.0 13.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  14. ↑ 14.0 14.1 CGSC: The Coli Genetics Stock Center
  15. ↑ 15.0 15.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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