ilvD:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
ilvD |
|---|---|
| Mnemonic |
Isoleucine-valine (requirement) |
| Synonyms |
ECK3763, b3771, JW5605[1], JW5605 |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
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MG1655 |
85.17 minutes |
MG1655: 3951501..3953351 |
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NC_012967: 3915280..3917130 |
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NC_012759: 3841170..3843020 |
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W3110 |
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W3110: 3683203..3681353 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
|
Coding Start (SO:0000323) |
3951504 |
Edman degradation |
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
ilvD(del) (Keio:JW5605) |
deletion |
deletion |
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ilvD::Tn5KAN-I-SceI (FB21444) |
Insertion at nt 535 in Minus orientation |
contains pKD46 | |||||
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ilvD::Tn5KAN-I-SceI (FB21445) |
Insertion at nt 535 in Minus orientation |
does not contain pKD46 | |||||
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ilvD500::Tn10 |
Insertion at 3,952,563 bp in MG1655 (NC_000913) |
adapted from Nichols et al.[6] |
Synonyms: ilv500::Tn10 | ||||
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ilvD105 |
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ilvD188(Oc) |
ochre (UAA) mutation | ||||||
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ilvD16 |
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ilvD132 |
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ilvD130 |
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ilvD145 |
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ilvD691::Tn10 |
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ilvD0 |
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ilvD75 |
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ilvD87 |
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ilvD138 |
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ilvD144 |
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ilvD88 |
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ilvD185 |
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ilvD106 |
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ilvD139 |
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ilvD500::Tn10 |
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ilvD3164::Tn10kan |
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ilvD493 |
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ilvD722(del)::kan |
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW5605 |
Plasmid clone |
Status:Clone OK Primer 1:GCCCCTAAGTACCGTTCCGCCAC Primer 2:CCACCCCCCAGTTTCGATTTATC | |
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Kohara Phage |
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Kohara Phage |
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Kohara Phage |
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Linked marker |
est. P1 cotransduction: 45% [6] | ||
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metEo-3079::Tn10 |
Linked marker |
est. P1 cotransduction: 6% [6] | |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ Flint, DH et al. (1993) The role and properties of the iron-sulfur cluster in Escherichia coli dihydroxy-acid dehydratase. J. Biol. Chem. 268 14732-42 PubMed
- ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 4.0 4.1 4.2 4.3 CGSC: The Coli Genetics Stock Center
- ↑ 5.0 5.1 Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
- ↑ 6.0 6.1 6.2 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
- ↑ Wechsler, JA & Adelberg, EA (1969) Antipolarity in the ilv operon of Escherichia coli K-12. J. Bacteriol. 98 1179-94 PubMed
- ↑ Singer, M et al. (1989) A collection of strains containing genetically linked alternating antibiotic resistance elements for genetic mapping of Escherichia coli. Microbiol. Rev. 53 1-24 PubMed
- ↑ Nichols, BP et al. (1998) Sequence analysis of Tn10 insertion sites in a collection of Escherichia coli strains used for genetic mapping and strain construction. J. Bacteriol. 180 6408-11 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 11.0 11.1 11.2 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
