tynA:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

tynA

Gene Synonym(s)

ECK1383, b1386, JW1381, feaA, maoA[1][2], maoA

Product Desc.

TynA[3][2];

Component of AMINEOXID-CPLX[3]

Copper amine oxidase; tyramine oxidase; Cu(II) and topaquinone cofactors; homodimer[4]

Product Synonyms(s)

tyramine oxidase, copper-requiring[1], B1386[3][1], MaoA[3][1], FeaA[3][1], TynA[3][1] , ECK1383, JW1381, maoA, b1386

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): tynA[3]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Topaquinone (TPQ) is 2,4,5-trihydroxyphenylalanine quinone, and is derived from a tyrosyl residue in the active site, in a copper-dependent oxidation reaction.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

tynA

Mnemonic

Tyramine

Synonyms

ECK1383, b1386, JW1381, feaA, maoA[1][2], maoA

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

31.19 minutes 

MG1655: 1449373..1447100
<gbrowseImage> name=NC_000913:1447100..1449373 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1442401..1440683
<gbrowseImage> name=NC_012967:1440683..1442401 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1339159..1341432
<gbrowseImage> name=NC_012759:1339159..1341432 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1453063..1450790
<gbrowseImage> name=NC_007779:1450790..1453063 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1539968..1537695
<gbrowseImage> name=NC_010473:1537695..1539968 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

1447103

Edman degradation

PMID:8631685
PMID:9043126


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

tynAL59I

L59I

(in strain: W)

Strain variation; seeded from UniProt:P46883

tynAK42E

K42E

(in strain: W)

Strain variation; seeded from UniProt:P46883

ΔtynA (Keio:JW1381)

deletion

deletion

PMID:16738554

Shigen
CGSC9221[5]

tynA::Tn5KAN-2 (FB20303)

Insertion at nt 1459 in Minus orientation

PMID:15262929

E. coli Genome Project:FB20303

does not contain pKD46

tynA::Tn5KAN-2 (FB20304)

Insertion at nt 1459 in Minus orientation

PMID:15262929

E. coli Genome Project:FB20304

contains pKD46

ΔtynA750::kan

PMID:16738554

CGSC:103258


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Notes

Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW1381

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGGAAGCCCCTCTCTGTATTC

Primer 2:CCtTTATCTTTCTTCAGCGCCCC

1E7

Kohara Phage

Genobase

PMID:3038334

5F1

Kohara Phage

Genobase

PMID:3038334

zhj-3076::Tn10

Linked marker

CAG18640 = CGSC7453[5]

est. P1 cotransduction: 63% [6]

trg-2::Tn10

Linked marker

CAG12026 = CGSC7376[5]

est. P1 cotransduction: 12% [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG13139

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13139

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002427

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945939

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2934

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004639

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

TynA

Synonyms

tyramine oxidase, copper-requiring[1], B1386[3][1], MaoA[3][1], FeaA[3][1], TynA[3][1] , ECK1383, JW1381, maoA, b1386

Product description

TynA[3][2];

Component of AMINEOXID-CPLX[3]

Copper amine oxidase; tyramine oxidase; Cu(II) and topaquinone cofactors; homodimer[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0030288

outer membrane-bounded periplasmic space

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0005507

copper ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000269

F

Seeded from EcoCyc (v14.0)

complete

GO:0005507

copper ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015798

F

Seeded from EcoCyc (v14.0)

complete

GO:0005507

copper ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015800

F

Seeded from EcoCyc (v14.0)

complete

GO:0005507

copper ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015801

F

Seeded from EcoCyc (v14.0)

complete

GO:0005507

copper ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015802

F

Seeded from EcoCyc (v14.0)

complete

GO:0005507

copper ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016182

F

Seeded from EcoCyc (v14.0)

complete

GO:0005507

copper ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0186

F

Seeded from EcoCyc (v14.0)

complete

GO:0005509

calcium ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0106

F

Seeded from EcoCyc (v14.0)

complete

GO:0008131

amine oxidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000269

F

Seeded from EcoCyc (v14.0)

complete

GO:0008131

amine oxidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015798

F

Seeded from EcoCyc (v14.0)

complete

GO:0008131

amine oxidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015800

F

Seeded from EcoCyc (v14.0)

complete

GO:0008131

amine oxidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015801

F

Seeded from EcoCyc (v14.0)

complete

GO:0008131

amine oxidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015802

F

Seeded from EcoCyc (v14.0)

complete

GO:0008131

amine oxidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016182

F

Seeded from EcoCyc (v14.0)

complete

GO:0008131

amine oxidase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.4.3.21

F

Seeded from EcoCyc (v14.0)

complete

GO:0009308

amine metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000269

P

Seeded from EcoCyc (v14.0)

complete

GO:0009308

amine metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015798

P

Seeded from EcoCyc (v14.0)

complete

GO:0009308

amine metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015800

P

Seeded from EcoCyc (v14.0)

complete

GO:0009308

amine metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015801

P

Seeded from EcoCyc (v14.0)

complete

GO:0009308

amine metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015802

P

Seeded from EcoCyc (v14.0)

complete

GO:0009308

amine metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016182

P

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

F

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0574

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0200

C

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

GO:0048038

quinone binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000269

F

Seeded from EcoCyc (v14.0)

complete

GO:0048038

quinone binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015798

F

Seeded from EcoCyc (v14.0)

complete

GO:0048038

quinone binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015800

F

Seeded from EcoCyc (v14.0)

complete

GO:0048038

quinone binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015801

F

Seeded from EcoCyc (v14.0)

complete

GO:0048038

quinone binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015802

F

Seeded from EcoCyc (v14.0)

complete

GO:0048038

quinone binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016182

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000269

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015798

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015800

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015801

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015802

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016182

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of AMINEOXID-CPLX

could be indirect

Protein

cyaA

PMID:16606699

Experiment(s):EBI-1139739

Protein

pheT

PMID:16606699

Experiment(s):EBI-1139739

Protein

maoC

PMID:16606699

Experiment(s):EBI-1139739

Protein

aceE

PMID:16606699

Experiment(s):EBI-1139739

Protein

thrS

PMID:16606699

Experiment(s):EBI-1139739

Protein

pheA

PMID:16606699

Experiment(s):EBI-1139739
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

periplasm

From EcoCyc[2]

Periplasm

PMID:8631685

EchoLocation:tynA


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MGSPSLYSAR KTTLALAVAL SFAWQAPVFA HGGEAHMVPM DKTLKEFGAD VQWDDYAQLF
TLIKDGAYVK VKPGAQTAIV NGQPLALQVP VVMKDNKAWV SDTFINDVFQ SGLDQTFQVE
KRPHPLNALT ADEIKQAVEI VKASADFKPN TRFTEISLLP PDKEAVWAFA LENKPVDQPR
KADVIMLDGK HIIEAVVDLQ NNKLLSWQPI KDAHGMVLLD DFASVQNIIN NSEEFAAAVK
KRGITDAKKV ITTPLTVGYF DGKDGLKQDA RLLKVISYLD VGDGNYWAHP IENLVAVVDL
EQKKIVKIEE GPVVPVPMTA RPFDGRDRVA PAVKPMQIIE PEGKNYTITG DMIHWRNWDF
HLSMNSRVGP MISTVTYNDN GTKRKVMYEG SLGGMIVPYG DPDIGWYFKA YLDSGDYGMG
TLTSPIARGK DAPSNAVLLN ETIADYTGVP MEIPRAIAVF ERYAGPEYKH QEMGQPNVST
ERRELVVRWI STVGNYDYIF DWIFHENGTI GIDAGATGIE AVKGVKAKTM HDETAKDDTR
YGTLIDHNIV GTTHQHIYNF RLDLDVDGEN NSLVAMDPVV KPNTAGGPRT STMQVNQYNI
GNEQDAAQKF DPGTIRLLSN PNKENRMGNP VSYQIIPYAG GTHPVAKGAQ FAPDEWIYHR
LSFMDKQLWV TRYHPGERFP EGKYPNRSTH DTGLGQYSKD NESLDNTDAV VWMTTGTTHV
ARAEEWPIMP TEWVHTLLKP WNFFDETPTL GALKKDK
Length

757

Mol. Wt

84.379 kDa

pI

5.8 (calculated)

Extinction coefficient

133,730 (calc based on 27 Y, 17 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-30

UniProt Manual:Signal Peptides

UniProt:P46883

Domain

335..757

PF01179 Copper amine oxidase, enzyme domain

PMID:19920124

Domain

124..210

PF02727 Copper amine oxidase, N2 domain

PMID:19920124

Domain

215..317

PF02728 Copper amine oxidase, N3 domain

PMID:19920124

Domain

33..121

PF07833 Copper amine oxidase N-terminal domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=tynA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:162135920

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945939

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004639

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P46883

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG13139

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13139

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945939

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002427

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2934

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MG1655

3a

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

Low confidence in the sequencing data set.

PMID: 24766808

Protein

E. coli K-12 MG1655

5

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

0a

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

Low confidence in the sequencing data set.

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

tynA

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File:.jpg

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:1449353..1449393 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b1386 (EcoliWiki Page)

NCBI GEO profiles for tynA

microarray

GenExpDB:b1386 (EcoliWiki Page)

Summary of data for tynA from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to tynA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG13139

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2934

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1386

EcoGene

EcoGene:EG13139

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002427

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004639

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT3G43670 (score: 1.000; bootstrap: 82%)
  • AT1G62810 (score: 0.738)
  • AT4G12290 (score: 0.382)
  • AT1G31710 (score: 0.222)
  • AT1G31670 (score: 0.187)
  • AT4G14940 (score: 0.173)
  • AT1G31690 (score: 0.105)
  • AT4G12280 (score: 0.088)
  • AT4G12270 (score: 0.065)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000007133 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000012286 (score: 0.293)
  • ENSBTAP00000001383 (score: 0.293)
  • ENSBTAP00000014327 (score: 0.291)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000006947 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000021620 (score: 0.276)
  • ENSCAFP00000021681 (score: 0.255)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050320-133 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050320-134 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000004625 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000354193 (score: 1.000; bootstrap: 100%)
  • ENSP00000253799 (score: 0.279)
  • ENSP00000312326 (score: 0.268)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000026896 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000002487 (score: 0.262)
  • ENSMMUP00000010592 (score: 0.256)
  • ENSMMUP00000002488 (score: 0.196)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000004538 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000018852 (score: 0.261)

From Inparanoid:20070104

Mus musculus

  • MGI:1923757 (score: 1.000; bootstrap: 100%)
  • MGI:3618290 (score: 0.506)
  • MGI:1917011 (score: 0.472)
  • MGI:2682321 (score: 0.292)
  • MGI:1306797 (score: 0.277)
  • MGI:2668431 (score: 0.260)

From Inparanoid:20070104

Oryza gramene

  • Q5Z6D3 (score: 1.000; bootstrap: 88%)
  • Q69KW1 (score: 0.273)
  • Q7XWW0 (score: 0.183)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000044191 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000015707 (score: 0.276)
  • ENSPTRP00000015708 (score: 0.263)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000011512 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000048618 (score: 0.525)
  • ENSRNOP00000033821 (score: 0.481)
  • ENSRNOP00000011588 (score: 0.304)
  • ENSRNOP00000028009 (score: 0.281)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC2E1P34 (score: 1.000; bootstrap: 100%)
  • SPBC12896c (score: 0.476)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000155616 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000163870 (score: 0.294)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00016700001 (score: 1.000; bootstrap: 100%)
  • GSTENP00008440001 (score: 0.298)
  • GSTENP00016699001 (score: 0.144)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000026212 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000027550 (score: 0.293)

From Inparanoid:20070104

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02728 Copper amine oxidase, N3 domain

Pfam (EcoliWiki Page)

PF02727 Copper amine oxidase, N2 domain

Pfam (EcoliWiki Page)

PF01179 Copper amine oxidase, enzyme domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:49998

Panther (EcoliWiki Page)

PTHR10638:SF12

Superfamily (EcoliWiki Page)

SUPERFAMILY:54416

Superfamily (EcoliWiki Page)

SUPERFAMILY:54416

Superfamily (EcoliWiki Page)

SUPERFAMILY:55383

Pfam (EcoliWiki Page)

PF07833 Copper amine oxidase N-terminal domain

EcoCyc

EcoCyc:EG13139

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13139

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002427

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2934

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004639

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.00 3.01 3.02 3.03 3.04 3.05 3.06 3.07 3.08 3.09 3.10 3.11 3.12 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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