tufA:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Standard Name

tufA

Gene Synonym(s)

ECK3326, b3339, JW3301, kirT, pulT, G7976[1][2]

Product Desc.

elongation factor Tu[2][3]

EF-Tu, Elongation Factor-Translation, unstable; GTP-dependent binding of aa-tRNA to the A-site of ribosomes; has intrinsic GTPase activity when bound to kirromycin[4]

Product Synonyms(s)

protein chain elongation factor EF-Tu (duplicate of tufB)[1], protein chain elongation factor EF-Tu (duplicate of tufA)[1], B3339[2][1], PulT[2][1], KirT[2][1], TufA[2][1], EF-Tu[2][1] , ECK3326, JW3301, kirT, pulT, b3339

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): fusA-tufA[2], rpsLG-fusA-tufA[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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tufA and tufB both encode EF-Tu

tufA encodes an essential function, with duplicate gene tufB, such that tufA or tufB can be deleted, but the double mutant is inviable. HT_Cmplx23_Cyt: FusA+Tsf+TufA.HT_Cmplx4_Cyt: Tsf+TufA.[4]


Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

tufA

Mnemonic

Translation unstable factor

Synonyms

ECK3326, b3339, JW3301, kirT, pulT, G7976[1][2]

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

74.75 minutes 

MG1655: 3469351..3468167
<gbrowseImage> name=NC_000913:3468167..3469351 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3399234..3398050
<gbrowseImage> name=NC_012967:3398050..3399234 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3355324..3356508
<gbrowseImage> name=NC_012759:3355324..3356508 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4169087..4170271
<gbrowseImage> name=NC_007779:4169087..4170271 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3567096..3565912
<gbrowseImage> name=NC_010473:3565912..3567096 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

3468170

Edman degradation

PMID:6997043
PMID:7021545
PMID:9298646


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔtufA (Keio:JW3301)

deletion

deletion

PMID:16738554

Shigen

tufAE349A

E349A

No change in binding GDP but higher binding constant for EF-Ts

seeded from UniProt:P0A6N1

tufAA376T,V

A376T,V

Kirromycin resistant

seeded from UniProt:P0A6N1

tufAQ115A

Q115A

Weaker binding for GDP and for EF- Ts

seeded from UniProt:P0A6N1

tufAQ125K

Q125K

Kirromycin resistant

seeded from UniProt:P0A6N1

tufAK137R,Q,E,I

K137R,Q,E,I

Reduces affinity for GDP

seeded from UniProt:P0A6N1

tufAD139N

D139N

Reduces affinity for GDP; increases affinity for XDP

seeded from UniProt:P0A6N1

tufAG223D

G223D

Inhibits codon-induced conformational changes leading to GTPase activation on the ribosome

seeded from UniProt:P0A6N1

tufAR231C

R231C

Pulvomycin resistant

seeded from UniProt:P0A6N1

tufAG317D

G317D

Kirromycin resistant

seeded from UniProt:P0A6N1

tufAH20A

H20A

No change in binding GDP and 3-fold reduction in binding EF-Ts

seeded from UniProt:P0A6N1

tufAV21G

V21G

Lowers GTPase activity 5 to 10- fold

seeded from UniProt:P0A6N1

tufAP83T

P83T

Loss of GTPase activity and creation of an autophosphorylation site

seeded from UniProt:P0A6N1

tufAR334C

R334C

Pulvomycin resistant

seeded from UniProt:P0A6N1

tufAT335A

T335A

Pulvomycin resistant

seeded from UniProt:P0A6N1

tufAS394G

S394G

(in tufA)

Strain variation; seeded from UniProt:P0A6N1

tufA1

CGSC:10014


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3301

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCTCTAAAGAAAAATTTGAACG

Primer 2:CCGCCCAGAACTTTAGCAACAAC

3F8

Kohara Phage

Genobase

PMID:3038334

9H3

Kohara Phage

Genobase

PMID:3038334

smg-3082::Tn10

Linked marker

CAG12071 = CGSC7444[5]

est. P1 cotransduction: 19% [6]
Synonyms:zhb-3082::Tn10, zhd-3082::Tn10

zhf-3084::Tn10

Linked marker

CAG18456 = CGSC7576[5]

est. P1 cotransduction: 24% [6]
Synonyms:zhe-3084::Tn10nnnCAG18456 also carries cysG0 (CGSC).

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11036

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11036

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001025

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947838

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1029

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010912

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

protein chain elongation factor EF-Tu

Synonyms

protein chain elongation factor EF-Tu (duplicate of tufB)[1], protein chain elongation factor EF-Tu (duplicate of tufA)[1], B3339[2][1], PulT[2][1], KirT[2][1], TufA[2][1], EF-Tu[2][1] , ECK3326, JW3301, kirT, pulT, b3339

Product description

elongation factor Tu[2][3]

EF-Tu, Elongation Factor-Translation, unstable; GTP-dependent binding of aa-tRNA to the A-site of ribosomes; has intrinsic GTPase activity when bound to kirromycin[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0003746

translation elongation factor activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00118

F

Seeded from EcoCyc (v14.0)

complete

GO:0003746

translation elongation factor activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004541

F

Seeded from EcoCyc (v14.0)

complete

GO:0003746

translation elongation factor activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0251

F

Seeded from EcoCyc (v14.0)

complete

GO:0003924

GTPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000795

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00118

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000795

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004160

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004161

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004541

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005225

F

Seeded from EcoCyc (v14.0)

complete

GO:0005525

GTP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0342

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0006412

translation

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0648

P

Seeded from EcoCyc (v14.0)

complete

GO:0006414

translational elongation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004541

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0019898

extrinsic to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9903

C

Seeded from EcoCyc (v14.0)

complete

GO:0046677

response to antibiotic

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0046

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

tsf

PMID:16606699

Experiment(s):EBI-1145593, EBI-1145593

Protein

acrF

PMID:15690043

Experiment(s):EBI-894882

Protein

fbpC

PMID:15690043

Experiment(s):EBI-894882

Protein

ydhQ

PMID:15690043

Experiment(s):EBI-894882

Protein

rpsB

PMID:15690043

Experiment(s):EBI-894882

Protein

valS

PMID:15690043

Experiment(s):EBI-894882

Protein

xylA

PMID:15690043

Experiment(s):EBI-894882

Protein

yaaA

PMID:15690043

Experiment(s):EBI-894882
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

Cytoplasm

PMID:7525272, PMID:7021545

EchoLocation:tufA


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSKEKFERTK PHVNVGTIGH VDHGKTTLTA AITTVLAKTY GGAARAFDQI DNAPEEKARG
ITINTSHVEY DTPTRHYAHV DCPGHADYVK NMITGAAQMD GAILVVAATD GPMPQTREHI
LLGRQVGVPY IIVFLNKCDM VDDEELLELV EMEVRELLSQ YDFPGDDTPI VRGSALKALE
GDAEWEAKIL ELAGFLDSYI PEPERAIDKP FLLPIEDVFS ISGRGTVVTG RVERGIIKVG
EEVEIVGIKE TQKSTCTGVE MFRKLLDEGR AGENVGVLLR GIKREEIERG QVLAKPGTIK
PHTKFESEVY ILSKDEGGRH TPFFKGYRPQ FYFRTTDVTG TIELPEGVEM VMPGDNIKMV
VTLIHPIAMD DGLRFAIREG GRTVGAGVVA KVLG
Length

394

Mol. Wt

43.283 kDa

pI

5.3 (calculated)

Extinction coefficient

20,400 - 20,775 (calc based on 10 Y, 1 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0A6N1

Modification Site

62

phosphorylation site at T62

probability greater than 75%

PMID:17938405

Modification Site

159

phosphorylation site at S159

probability greater than 75%

PMID:17938405

Modification Site

168

phosphorylation site at T168

probability less than 75%

PMID:17938405

Modification Site

66

phosphorylation site at S66

probability less than 75%

PMID:17938405

Modification Site

174

phosphorylation site at S174

probability less than 75%

PMID:17938405

Modification Site

222

phosphorylation site at S222

probability greater than 75%

PMID:17938405

Modification Site

65

phosphorylation site at T65

probability less than 75%

PMID:17938405

Modification Site

313

phosphorylation site at S313

probability greater than 75%

PMID:17938405

Modification Site

332

phosphorylation site at Y332

probability greater than 75%

PMID:17938405

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=tufA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131218

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947838

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010912

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A6N1

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11036

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11036

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947838

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001025

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1029

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

Ecoli K-12

3350.186+/-21.275

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

1.7209+/-0.04889

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

0.443412162

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

5.1

% total protein

  • Medium: M9
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): 52.2

purification

E. coli BE

PMID:775340

Protein

4.6

% total protein

  • Medium: M9+casamino acids
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): 28.8

purification

E. coli BE

PMID:775340

Protein

4.5

% total protein

  • Medium: Tryptone
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): 28.8

purification

E. coli BE

PMID:775340

Protein

2.7

% total protein

  • Medium: Acetate
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): 270

purification

E. coli BE

PMID:775340

Protein

70000

Molecules/cell

  • Medium:

purification

PMID:775340 cites PMID:77620 for the number

PMID:775340

  • PMID:776220

Protein

E. coli K-12 MG1655

579074

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

116583

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

339302

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Values are unlikely to distinguish between products from the tufA and tufB genes.

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

fusA-tufA

rpsLG-fusA-tufA

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3469331..3469371 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3339 (EcoliWiki Page)

NCBI GEO profiles for tufA

microarray

GenExpDB:b3339 (EcoliWiki Page)

Summary of data for tufA from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (3468870..3469072) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ09; Well:B1[7]

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Notes

Accessions Related to tufA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11036

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1029

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3339

EcoGene

EcoGene:EG11036

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001025

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010912

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000015131 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000010611 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G02930 (score: 1.000; bootstrap: 70%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000025586 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00023870 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00007000 (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000025359 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000005794 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050320-73 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050320-73 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0219464 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0024556 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19322-PA (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000025606 (score: 0.129)
  • ENSGALP00000022592 (score: 1.000; bootstrap: 96%)
  • ENSGALP00000009371 (score: 0.123)
  • ENSGALP00000004582 (score: 0.120)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000322439 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000004400 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000019426 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1923686 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6ZI53 (score: 1.000; bootstrap: 53%)
  • Q8W2C3 (score: 1.000; bootstrap: 56%)
  • Q9SEF8 (score: 0.978)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000013572 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000025203 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YOR187W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC9B64c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000158650 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00021887001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000032775 (score: 1.000; bootstrap: 88%)

From Inparanoid:20070104

Shigella flexneri

TUFA

From SHIGELLACYC

E. coli O157

TUFA

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:50447

Superfamily (EcoliWiki Page)

SUPERFAMILY:50465

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

EcoCyc

EcoCyc:EG11036

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11036

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001025

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1029

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010912

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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