rplD:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

rplD

Gene Synonym(s)

ECK3306, b3319, JW3281, eryA[1], eryA

Product Desc.

50S ribosomal subunit protein L4[2][3];

Component of 50S ribosomal subunit[3]; ribosome[2][3]

50S ribosomal subunit protein L4; erythromycin sensitivity[4]

Product Synonyms(s)

50S ribosomal subunit protein L4[1], B3319[2][1], EryA[2][1], RplD[2][1] , ECK3306, eryA, JW3281, b3319

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

rplD

Mnemonic

Ribosomal protein, large

Synonyms

ECK3306, b3319, JW3281, eryA[1], eryA

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

74.35 minutes 

MG1655: 3450308..3449703
<gbrowseImage> name=NC_000913:3449703..3450308 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3380191..3379586
<gbrowseImage> name=NC_012967:3379586..3380191 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3336860..3337465
<gbrowseImage> name=NC_012759:3336860..3337465 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4188130..4188735
<gbrowseImage> name=NC_007779:4188130..4188735 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3548053..3547448
<gbrowseImage> name=NC_010473:3547448..3548053 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

3449703

Edman degradation

PMID:9298646


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

rplDL134P

L134P

Does not regulate the S10 operon in vivo

seeded from UniProt:P60723

rplDDATGIDPVSLIAFDKVVMTADAVKQVEEMLA171RRSK

DATGIDPVSLIAFDKVVMTADAVKQVEEMLA171RRSK

Loss of S10 operon regulation. Assembles into ribosomes in vivo

seeded from UniProt:P60723

rplDA160V

A160V

Does not regulate the S10 operon; assembles into ribosomes in vivo

seeded from UniProt:P60723

rplDV167D

V167D

Does not regulate the S10 operon in vivo

seeded from UniProt:P60723

rplDK63E

K63E

(in strain: N282; confers erythromycin resistance. Ribosomes bind erythromycin poorly and have reduced peptidyltransferase activity. 50S subunits assemble normally, even in the presence of drug, but assembly is cold- sensitive at 20 degrees Celsius)

Strain variation; seeded from UniProt:P60723

rplD

Deletion

rplD

Deletion

rplD

Deletion

rplDT131I

T131I

Does not regulate the S10 operon; assembles into ribosomes in vivo

seeded from UniProt:P60723

rplD1

PMID:340907

CGSC:53722

rplD282

CGSC:46684

rplD in strain TS15-23

Resistant to

Two step Tiamulin resistant

PMID:372756

strain: TS15-23

table 1 and 2

rplD in strain N282

Resistant to

Mutant with altered protein 50-8 (L4) is resistant to erythromycin

PMID:4589347

Strain N282

rplD5

Resistant to

Resistant to erythromycin at the permissive temperature of 42C.

PMID:340907

Strain: 345-05

See table 6

rplD20

Resistant to

Resistant to erythromycin

PMID:340907

Strain: 345-20

See table 6

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3281

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGAATTAGTATTGAAAGACGC

Primer 2:CCTGCCAGCATCTCCTCAACTTG

9H3

Kohara Phage

Genobase

PMID:3038334

E1H9

Kohara Phage

Genobase

PMID:3038334

smg-3082::Tn10

Linked marker

CAG12071 = CGSC7444[5]

est. P1 cotransduction: 46% [6]
Synonyms:zhb-3082::Tn10, zhd-3082::Tn10

zhf-3084::Tn10

Linked marker

CAG18456 = CGSC7576[5]

est. P1 cotransduction: 8% [6]
Synonyms:zhe-3084::Tn10nnnCAG18456 also carries cysG0 (CGSC).

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10867

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10867

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000858

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947818

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0860

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010858

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RplD

Synonyms

50S ribosomal subunit protein L4[1], B3319[2][1], EryA[2][1], RplD[2][1] , ECK3306, eryA, JW3281, b3319

Product description

50S ribosomal subunit protein L4[2][3];

Component of 50S ribosomal subunit[3]; ribosome[2][3]

50S ribosomal subunit protein L4; erythromycin sensitivity[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0003723

RNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0694

F

Seeded from EcoCyc (v14.0)

complete

GO:0003735

structural constituent of ribosome

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002136

F

Seeded from EcoCyc (v14.0)

complete

GO:0005840

ribosome

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002136

C

Seeded from EcoCyc (v14.0)

complete

GO:0005840

ribosome

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0689

C

Seeded from EcoCyc (v14.0)

complete

GO:0006350

transcription

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0804

P

Seeded from EcoCyc (v14.0)

complete

GO:0030371

translation repressor activity

PMID: 6996835

IDA: Inferred from Direct Assay

F

complete

GO:0006353

transcription termination

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0806

P

Seeded from EcoCyc (v14.0)

complete

GO:0022625

cytosolic large ribosomal subunit

C

Missing: evidence, reference

GO:0006412

translation

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01328

P

Seeded from EcoCyc (v14.0)

complete

GO:0006412

translation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002136

P

Seeded from EcoCyc (v14.0)

complete

GO:0006417

regulation of translation

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0810

P

Seeded from EcoCyc (v14.0)

complete

GO:0019843

rRNA binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01328

F

Seeded from EcoCyc (v14.0)

complete

GO:0019843

rRNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0699

F

Seeded from EcoCyc (v14.0)

complete

GO:0030529

ribonucleoprotein complex

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0687

C

Seeded from EcoCyc (v14.0)

complete

GO:0046677

response to antibiotic

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0046

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of 50S ribosomal subunit

could be indirect

Protein

clpA

PMID:15690043

Experiment(s):EBI-881374, EBI-891593

Protein

deaD

PMID:15690043

Experiment(s):EBI-881374, EBI-881486

Protein

dnaK

PMID:15690043

Experiment(s):EBI-881374, EBI-890853

Protein

dps

PMID:15690043

Experiment(s):EBI-881374

Protein

fusA

PMID:15690043

Experiment(s):EBI-881374

Protein

gatZ

PMID:15690043

Experiment(s):EBI-881374

Protein

pflB

PMID:15690043

Experiment(s):EBI-881374

Protein

rho

PMID:15690043

Experiment(s):EBI-881374, EBI-891277

Protein

rplA

PMID:15690043

Experiment(s):EBI-881374

Protein

rplB

PMID:15690043

Experiment(s):EBI-881374

Protein

rplC

PMID:15690043

Experiment(s):EBI-881374

Protein

rplE

PMID:15690043

Experiment(s):EBI-881374

Protein

rplF

PMID:15690043

Experiment(s):EBI-881374

Protein

rplJ

PMID:15690043

Experiment(s):EBI-881374

Protein

rplM

PMID:15690043

Experiment(s):EBI-881374

Protein

rplN

PMID:15690043

Experiment(s):EBI-881374

Protein

rplQ

PMID:15690043

Experiment(s):EBI-881374

Protein

rplV

PMID:15690043

Experiment(s):EBI-881374

Protein

rplX

PMID:15690043

Experiment(s):EBI-881374

Protein

rpoC

PMID:15690043

Experiment(s):EBI-881374, EBI-879261

Protein

rpsB

PMID:15690043

Experiment(s):EBI-881374

Protein

rpsC

PMID:15690043

Experiment(s):EBI-881374

Protein

rpsD

PMID:15690043

Experiment(s):EBI-881374

Protein

rpsE

PMID:15690043

Experiment(s):EBI-881374

Protein

rpsG

PMID:15690043

Experiment(s):EBI-881374

Protein

rpsJ

PMID:15690043

Experiment(s):EBI-881374

Protein

rpsK

PMID:15690043

Experiment(s):EBI-881374

Protein

rpsM

PMID:15690043

Experiment(s):EBI-881374

Protein

secA

PMID:15690043

Experiment(s):EBI-881374, EBI-886105

Protein

srmB

PMID:15690043

Experiment(s):EBI-881374, EBI-889906, EBI-894853

Protein

tufA

PMID:15690043

Experiment(s):EBI-881374

Protein

rnr

PMID:15690043

Experiment(s):EBI-881374, EBI-883997, EBI-891136

Protein

ygiF

PMID:15690043

Experiment(s):EBI-881374

Protein

slyD

PMID:16606699

Experiment(s):EBI-1145569

Protein

yhjB

PMID:16606699

Experiment(s):EBI-1145569

Protein

rpsJ

PMID:19402753

MALDI(Z-score):17.053160

Protein

rplA

PMID:19402753

MALDI(Z-score):17.053160

Protein

rplM

PMID:19402753

MALDI(Z-score):17.053160

Protein

rpsM

PMID:19402753

MALDI(Z-score):17.053160

Protein

rpsC

PMID:19402753

MALDI(Z-score):17.053160

Protein

rpsD

PMID:19402753

MALDI(Z-score):17.053160

Protein

rplN

PMID:19402753

MALDI(Z-score):17.053160

Protein

rplE

PMID:19402753

MALDI(Z-score):17.053160

Protein

rplB

PMID:19402753

MALDI(Z-score):17.053160

Protein

rplF

PMID:19402753

MALDI(Z-score):17.053160

Protein

Subunits of ribosome

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MELVLKDAQS ALTVSETTFG RDFNEALVHQ VVVAYAAGAR QGTRAQKTRA EVTGSGKKPW
RQKGTGRARS GSIKSPIWRS GGVTFAARPQ DHSQKVNKKM YRGALKSILS ELVRQDRLIV
VEKFSVEAPK TKLLAQKLKD MALEDVLIIT GELDENLFLA ARNLHKVDVR DATGIDPVSL
IAFDKVVMTA DAVKQVEEML A
Length

201

Mol. Wt

22.086 kDa

pI

10.1 (calculated)

Extinction coefficient

13,980 (calc based on 2 Y, 2 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

12..199

PF00573 Ribosomal protein L4/L1 family

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rplD taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131198

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947818

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010858

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P60723

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10867

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10867

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947818

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000858

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0860

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

2.64E+04

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

E. coli K-12 MG1655

131359

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

18688

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

68385

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3450288..3450328 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3319 (EcoliWiki Page)

NCBI GEO profiles for rplD

microarray

GenExpDB:b3319 (EcoliWiki Page)

Summary of data for rplD from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to rplD Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10867

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0860

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3319

EcoGene

EcoGene:EG10867

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000858

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010858

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000007187 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000004923 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G20060 (score: 1.000; bootstrap: 84%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000001861 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00024747 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00020717 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000026378 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000006378 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050522-388 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050522-388 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0185424 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0001995 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19152-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000253099 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000006770 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:2137210 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000017826 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000045893 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC2D108c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000166819 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00004891001 (score: 1.000; bootstrap: 100%)
  • GSTENP00000974001 (score: 0.097)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000047748 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPLD

From SHIGELLACYC

E. coli O157

RPLD

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:52166

Panther (EcoliWiki Page)

PTHR10746:SF2

Pfam (EcoliWiki Page)

PF00573 Ribosomal protein L4/L1 family

EcoCyc

EcoCyc:EG10867

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10867

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000858

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0860

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010858

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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