rplD:Gene Product(s)

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RplD

Synonyms

50S ribosomal subunit protein L4[1], B3319[2][1], EryA[2][1], RplD[2][1] , ECK3306, eryA, JW3281, b3319

Product description

50S ribosomal subunit protein L4[2][3];

Component of 50S ribosomal subunit[3]; ribosome[2][3]

50S ribosomal subunit protein L4; erythromycin sensitivity[4]

EC number (for enzymes)


edit table

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003723

RNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0694

F

Seeded from EcoCyc (v14.0)

complete

GO:0003735

structural constituent of ribosome

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002136

F

Seeded from EcoCyc (v14.0)

complete

GO:0005840

ribosome

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002136

C

Seeded from EcoCyc (v14.0)

complete

GO:0005840

ribosome

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0689

C

Seeded from EcoCyc (v14.0)

complete

GO:0006350

transcription

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0804

P

Seeded from EcoCyc (v14.0)

complete

GO:0030371

translation repressor activity

PMID:6996835[5]

IDA: Inferred from Direct Assay

F

complete

GO:0006353

transcription termination

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0806

P

Seeded from EcoCyc (v14.0)

complete

GO:0022625

cytosolic large ribosomal subunit

C

Missing: evidence, reference

GO:0006412

translation

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01328

P

Seeded from EcoCyc (v14.0)

complete

GO:0006412

translation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002136

P

Seeded from EcoCyc (v14.0)

complete

GO:0006417

regulation of translation

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0810

P

Seeded from EcoCyc (v14.0)

complete

GO:0019843

rRNA binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01328

F

Seeded from EcoCyc (v14.0)

complete

GO:0019843

rRNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0699

F

Seeded from EcoCyc (v14.0)

complete

GO:0030529

ribonucleoprotein complex

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0687

C

Seeded from EcoCyc (v14.0)

complete

GO:0046677

response to antibiotic

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0046

P

Seeded from EcoCyc (v14.0)

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of 50S ribosomal subunit

could be indirect

Protein

clpA

PMID:15690043[6]

Experiment(s):EBI-881374, EBI-891593

Protein

deaD

PMID:15690043[6]

Experiment(s):EBI-881374, EBI-881486

Protein

dnaK

PMID:15690043[6]

Experiment(s):EBI-881374, EBI-890853

Protein

dps

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

fusA

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

gatZ

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

pflB

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rho

PMID:15690043[6]

Experiment(s):EBI-881374, EBI-891277

Protein

rplA

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rplB

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rplC

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rplE

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rplF

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rplJ

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rplM

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rplN

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rplQ

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rplV

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rplX

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rpoC

PMID:15690043[6]

Experiment(s):EBI-881374, EBI-879261

Protein

rpsB

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rpsC

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rpsD

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rpsE

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rpsG

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rpsJ

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rpsK

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rpsM

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

secA

PMID:15690043[6]

Experiment(s):EBI-881374, EBI-886105

Protein

srmB

PMID:15690043[6]

Experiment(s):EBI-881374, EBI-889906, EBI-894853

Protein

tufA

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

rnr

PMID:15690043[6]

Experiment(s):EBI-881374, EBI-883997, EBI-891136

Protein

ygiF

PMID:15690043[6]

Experiment(s):EBI-881374

Protein

slyD

PMID:16606699[7]

Experiment(s):EBI-1145569

Protein

yhjB

PMID:16606699[7]

Experiment(s):EBI-1145569

Protein

rpsJ

PMID:19402753[8]

MALDI(Z-score):17.053160

Protein

rplA

PMID:19402753[8]

MALDI(Z-score):17.053160

Protein

rplM

PMID:19402753[8]

MALDI(Z-score):17.053160

Protein

rpsM

PMID:19402753[8]

MALDI(Z-score):17.053160

Protein

rpsC

PMID:19402753[8]

MALDI(Z-score):17.053160

Protein

rpsD

PMID:19402753[8]

MALDI(Z-score):17.053160

Protein

rplN

PMID:19402753[8]

MALDI(Z-score):17.053160

Protein

rplE

PMID:19402753[8]

MALDI(Z-score):17.053160

Protein

rplB

PMID:19402753[8]

MALDI(Z-score):17.053160

Protein

rplF

PMID:19402753[8]

MALDI(Z-score):17.053160

Protein

Subunits of ribosome

could be indirect


edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MELVLKDAQS ALTVSETTFG RDFNEALVHQ VVVAYAAGAR QGTRAQKTRA EVTGSGKKPW
RQKGTGRARS GSIKSPIWRS GGVTFAARPQ DHSQKVNKKM YRGALKSILS ELVRQDRLIV
VEKFSVEAPK TKLLAQKLKD MALEDVLIIT GELDENLFLA ARNLHKVDVR DATGIDPVSL
IAFDKVVMTA DAVKQVEEML A
Length

201

Mol. Wt

22.086 kDa

pI

10.1 (calculated)

Extinction coefficient

13,980 (calc based on 2 Y, 2 W, and 0 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

12..199

PF00573 Ribosomal protein L4/L1 family

PMID:19920124[9]

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rplD taxon=562,83333 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131198

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947818

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010858

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P60723

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10867

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10867

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947818

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000858

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0860

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Yates, JL & Nomura, M (1980) E. coli ribosomal protein L4 is a feedback regulatory protein. Cell 21 517-22 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 6.14 6.15 6.16 6.17 6.18 6.19 6.20 6.21 6.22 6.23 6.24 6.25 6.26 6.27 6.28 6.29 6.30 6.31 6.32 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  7. ↑ 7.0 7.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  8. ↑ 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  9. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=rplD:Gene_Product(s)&oldid=1495107"