ptsI:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

ptsI

Gene Synonym(s)

ECK2411, b2416, JW2409, ctr[1], ctr

Product Desc.

PTS enzyme I[2][3]

Phosphotransferase system enzyme I[4]

Product Synonyms(s)

PEP-protein phosphotransferase of PTS system (enzyme I)[1], B2416[2][1], Ctr[2][1], PtsI[2][1] , ctr, ECK2411, JW2409, b2416

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ptsHI-crr[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ptsI

Mnemonic

Phosphotransferase system

Synonyms

ECK2411, b2416, JW2409, ctr[1], ctr

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

54.57 minutes 

MG1655: 2532088..2533815
<gbrowseImage> name=NC_000913:2532088..2533815 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2462792..2464519
<gbrowseImage> name=NC_012967:2462792..2464519 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2417893..2419620
<gbrowseImage> name=NC_012759:2417893..2419620 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2539512..2541239
<gbrowseImage> name=NC_007779:2539512..2541239 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2623853..2625580
<gbrowseImage> name=NC_010473:2623853..2625580 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

2532088

Edman degradation

PMID:9298646


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ptsI(del) (Keio:JW2409)

deletion

deletion

PMID:16738554

Shigen

CGSC9918[5]

ptsI::Tn5KAN-2 (FB20789)

Insertion at nt 1687 in Minus orientation

PMID:15262929

E. coli Genome Project:FB20789

contains pKD46

ptsI211

CGSC:5399

ptsI19(ts)

temperature sensitive

CGSC:5762

ptsI24

CGSC:7019

ptsI7

CGSC:7990

ptsI2

CGSC:8077

ptsI40

CGSC:11028

ptsI0(del)

CGSC:11460

ptsI34(polar)

CGSC:14454

ptsI6

CGSC:17211

ptsI27(del)

CGSC:43774

ptsI745(del)::kan

PMID:16738554

CGSC:102522

ptsI strain D21e18

Resistant to

Ampicillin resistance

PMID:4945191

Table 2

ptsI in strain D21e18

Auxotrophies

Galactose negative

PMID:4945191

D21e18

table 7.

ptsI in strain D21e18

Resistant to

resistant to phage C21

D21e18

Table 2.

ptsI in strain D21e18

Utilization of carbon

Was unable to grown in minimal medium with glucose as sole carbon source.

PMID:4945191

D21e18

ptsH in strain E187

Resistant to

Resistant to phosphonomycin

PMID:4555418

Strain:E187

Table 1

ptsHI in strain L191

Resistant to

Double mutant is resistant to streptozotocin

PMID:161156

Strain: L191

Table 1

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2409

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCATTTCAGGCATTTTAGCATC

Primer 2:CCGCAGATTGTTTTTTCTTCAAT

12G2

Kohara Phage

Genobase

PMID:3038334

nupC510::Tn10

Linked marker

CAG18468 = CGSC7410[5]

est. P1 cotransduction: 44% [6]

purC80::Tn10

Linked marker

CAG18470 = CGSC7413[5]

est. P1 cotransduction: 4% [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10789

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10789

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000780

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946879

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0782

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007967

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

PtsI

Synonyms

PEP-protein phosphotransferase of PTS system (enzyme I)[1], B2416[2][1], Ctr[2][1], PtsI[2][1] , ctr, ECK2411, JW2409, b2416

Product description

PTS enzyme I[2][3]

Phosphotransferase system enzyme I[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000287

magnesium ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0460

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015813

F

Seeded from EcoCyc (v14.0)

complete

GO:0005351

sugar:hydrogen symporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008731

F

Seeded from EcoCyc (v14.0)

complete

GO:0005829

cytosol

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc (v14.0)

complete

GO:0008643

carbohydrate transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0762

P

Seeded from EcoCyc (v14.0)

complete

GO:0008965

phosphoenolpyruvate-protein phosphotransferase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008731

F

Seeded from EcoCyc (v14.0)

complete

GO:0008965

phosphoenolpyruvate-protein phosphotransferase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.7.3.9

F

Seeded from EcoCyc (v14.0)

complete

GO:0009401

phosphoenolpyruvate-dependent sugar phosphotransferase system

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008731

P

Seeded from EcoCyc (v14.0)

complete

GO:0009401

phosphoenolpyruvate-dependent sugar phosphotransferase system

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0598

P

Seeded from EcoCyc (v14.0)

complete

GO:0016301

kinase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0418

F

Seeded from EcoCyc (v14.0)

complete

GO:0016310

phosphorylation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000121

P

Seeded from EcoCyc (v14.0)

complete

GO:0016310

phosphorylation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008279

P

Seeded from EcoCyc (v14.0)

complete

GO:0016310

phosphorylation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018274

P

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

GO:0016772

transferase activity, transferring phosphorus-containing groups

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000121

F

Seeded from EcoCyc (v14.0)

complete

GO:0016772

transferase activity, transferring phosphorus-containing groups

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006318

F

Seeded from EcoCyc (v14.0)

complete

GO:0016772

transferase activity, transferring phosphorus-containing groups

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008279

F

Seeded from EcoCyc (v14.0)

complete

GO:0016772

transferase activity, transferring phosphorus-containing groups

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018274

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

nadE

PMID:16606699

Experiment(s):EBI-1142752

Protein

purR

PMID:16606699

Experiment(s):EBI-1142752

Protein

entC

PMID:16606699

Experiment(s):EBI-1142752

Protein

dnaJ

PMID:16606699

Experiment(s):EBI-1142752

Protein

ftsY

PMID:16606699

Experiment(s):EBI-1142752
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MISGILASPG IAFGKALLLK EDEIVIDRKK ISADQVDQEV ERFLSGRAKA SAQLETIKTK
AGETFGEEKE AIFEGHIMLL EDEELEQEII ALIKDKHMTA DAAAHEVIEG QASALEELDD
EYLKERAADV RDIGKRLLRN ILGLKIIDLS AIQDEVILVA ADLTPSETAQ LNLKKVLGFI
TDAGGRTSHT SIMARSLELP AIVGTGSVTS QVKNDDYLIL DAVNNQVYVN PTNEVIDKMR
AVQEQVASEK AELAKLKDLP AITLDGHQVE VCANIGTVRD VEGAERNGAE GVGLYRTEFL
FMDRDALPTE EEQFAAYKAV AEACGSQAVI VRTMDIGGDK ELPYMNFPKE ENPFLGWRAI
RIAMDRREIL RDQLRAILRA SAFGKLRIMF PMIISVEEVR ALRKEIEIYK QELRDEGKAF
DESIEIGVMV ETPAAATIAR HLAKEVDFFS IGTNDLTQYT LAVDRGNDMI SHLYQPMSPS
VLNLIKQVID ASHAEGKWTG MCGELAGDER ATLLLLGMGL DEFSMSAISI PRIKKIIRNT
NFEDAKVLAE QALAQPTTDE LMTLVNKFIE EKTIC
Length

575

Mol. Wt

63.563 kDa

pI

4.6 (calculated)

Extinction coefficient

24,410 - 24,910 (calc based on 9 Y, 2 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Modification Site

181

phosphorylation site at T181

probability less than 75%

PMID:17938405

Modification Site

188

phosphorylation site at S188

probability less than 75%

PMID:17938405

Modification Site

187

phosphorylation site at T187

probability greater than 75%

PMID:17938405

Modification Site

190

phosphorylation site at T190

probability less than 75%

PMID:17938405

Modification Site

191

phosphorylation site at S191

probability less than 75%

PMID:17938405

Domain

147..225

PF00391 PEP-utilising enzyme, mobile domain

PMID:19920124

Domain

250..542

PF02896 PEP-utilising enzyme, TIM barrel domain

PMID:19920124

Domain

2..127

PF05524 PEP-utilising enzyme, N-terminal

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ptsI taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130342

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946879

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007967

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P08839

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10789

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10789

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946879

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000780

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0782

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

5.70E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

E. coli K-12 EMG2

360

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: M45

PMID: 9298646

Protein

E. coli K-12 MG1655

15068

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

5491

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

3825

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

ptsHI-crr

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2532068..2532108 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2416 (EcoliWiki Page)

NCBI GEO profiles for ptsI

microarray

GenExpDB:b2416 (EcoliWiki Page)

Summary of data for ptsI from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to ptsI Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10789

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0782

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2416

EcoGene

EcoGene:EG10789

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000780

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007967

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • YP_026278 (score: 0.216)
  • AT4G15530 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • YP_026278 (score: 0.223)
  • Q7XJK0 (score: 1.000; bootstrap: 100%)
  • Q7XJK1 (score: 1.000; bootstrap: 100%)
  • O24612 (score: 1.000; bootstrap: 100%)
  • Q6AVA8 (score: 1.000; bootstrap: 100%)
  • Q84N32 (score: 0.981)
  • Q9SNY6 (score: 0.973)
  • Q7DMU6 (score: 0.926)
  • P11155 (score: 0.904)
  • Q5RZZ9 (score: 0.862)
  • Q75KR1 (score: 0.776)
  • O82032 (score: 0.774)
  • Q7XYB5 (score: 0.214)
  • Q4JIY1 (score: 0.171)
  • Q7XJJ9 (score: 0.140)
  • Q41847 (score: 0.084)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000021881 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

PTSI

From SHIGELLACYC

E. coli O157

PTSI

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00391 PEP-utilising enzyme, mobile domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:47831

Superfamily (EcoliWiki Page)

SUPERFAMILY:51621

Superfamily (EcoliWiki Page)

SUPERFAMILY:52009

Panther (EcoliWiki Page)

PTHR22931:SF10

Pfam (EcoliWiki Page)

PF02896 PEP-utilising enzyme, TIM barrel domain

Pfam (EcoliWiki Page)

PF05524 PEP-utilising enzyme, N-terminal

EcoCyc

EcoCyc:EG10789

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10789

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000780

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0782

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007967

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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