nuoF:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

nuoF

Gene Synonym(s)

ECK2278, b2284, JW2279[1], JW2279, nuoB

Product Desc.

NuoF[2][3];

Component of soluble NADH dehydrogenase fragment[3]; NADH dehydrogenase I[2][3]

NADH:ubiquinone oxidoreductase subunit F, complex I; NADH dehydrogenase I[4]

Product Synonyms(s)

NADH:ubiquinone oxidoreductase, chain F[1], B2284[2][1], NuoF[2][1] , ECK2278, JW2279, nuoB, b2284

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): nuoABCEFGHIJKLMN[2], nuo1-14

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

nuoF

Mnemonic

NADH:ubiquinone oxidoreductase

Synonyms

ECK2278, b2284, JW2279[1], JW2279, nuoB

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

51.69 minutes 

MG1655: 2399577..2398240
<gbrowseImage> name=NC_000913:2398240..2399577 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2345146..2343809
<gbrowseImage> name=NC_012967:2343809..2345146 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2284045..2285382
<gbrowseImage> name=NC_012759:2284045..2285382 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2406225..2404888
<gbrowseImage> name=NC_007779:2404888..2406225 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2491342..2490005
<gbrowseImage> name=NC_010473:2490005..2491342 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

2398240

Edman degradation

PMID:11416161
PMID:11997136


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔnuoF (Keio:JW2279)

deletion

deletion

PMID:16738554

Shigen
CGSC9837[5]

nuoF::Tn5KAN-2 (FB20744)

Insertion at nt 642 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20744

contains pKD46

nuoF::Tn5KAN-2 (FB20745)

Insertion at nt 642 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20745

does not contain pKD46

ΔnuoF::kan

deletion

Biolog:respiration

unable to respire D-Galactose

PMID:16095938

ΔnuoF::kan

deletion

Biolog:respiration

unable to respire b-Methyl-D-glucoside

PMID:16095938

ΔnuoF::kan

deletion

Biolog:respiration

unable to respire DL-a-Glycerol

PMID:16095938

ΔnuoF::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938

ΔnuoF::kan

deletion

Biolog:respiration

unable to respire a-Hydroxybutyrate

PMID:16095938

ΔnuoF::kan

deletion

Biolog:respiration

unable to respire a-Ketobutyrate

PMID:16095938

ΔnuoF::kan

deletion

Biolog:respiration

unable to respire a-Ketoglutarate

PMID:16095938

ΔnuoF::kan

deletion

Biolog:respiration

unable to respire DL-Lactate

PMID:16095938

ΔnuoF::kan

deletion

Biolog:respiration

unable to respire Succinate

PMID:16095938

ΔnuoF::kan

deletion

Biolog:respiration

unable to respire Bromosuccinate

PMID:16095938

ΔnuoF::kan

deletion

Biolog:respiration

unable to respire Glucuronamide

PMID:16095938

ΔnuoF::kan

deletion

Biolog:respiration

unable to respire L-Alanine

PMID:16095938

ΔnuoF::kan

deletion

Biolog:respiration

unable to respire L-Alanyl-glycine

PMID:16095938

ΔnuoF::kan

deletion

Biolog:respiration

unable to respire L-Asparagine

PMID:16095938

ΔnuoF::kan

deletion

Biolog:respiration

unable to respire L-Aspartate

PMID:16095938

ΔnuoF::kan

deletion

Biolog:respiration

unable to respire Glycyl-L-aspartate

PMID:16095938

ΔnuoF::kan

deletion

Biolog:respiration

unable to respire L-Serine

PMID:16095938

ΔnuoF::kan

deletion

Biolog:respiration

unable to respire Inosine

PMID:16095938

ΔnuoF::kan

deletion

Biolog:respiration

unable to respire Uridine

PMID:16095938

ΔnuoF766::kan

PMID:16738554

CGSC:102146


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2279

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAAAAACATTATCCGTACTCC

Primer 2:CCCCAGCGCTCTTTCAGCAGGTT

E9B9

Kohara Phage

Genobase

PMID:3038334

9C2

Kohara Phage

Genobase

PMID:3038334

zfb-223::Tn10

Linked marker

CAG18484 = CGSC7406[5]

est. P1 cotransduction: 74% [6]
Synonyms:zej-223::Tn10

zfd-1::Tn10

Linked marker

CAG18467 = CGSC7408[5]

est. P1 cotransduction: % [6]
Synonyms:zfb-1::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11774

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11774

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001708

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946753

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1723

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007545

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

NuoF

Synonyms

NADH:ubiquinone oxidoreductase, chain F[1], B2284[2][1], NuoF[2][1] , ECK2278, JW2279, nuoB, b2284

Product description

NuoF[2][3];

Component of soluble NADH dehydrogenase fragment[3]; NADH dehydrogenase I[2][3]

NADH:ubiquinone oxidoreductase subunit F, complex I; NADH dehydrogenase I[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

NOT

GO:0005737

cytoplasm

PMID:7607227

IDA: Inferred from Direct Assay

C

Seeded from Riley et al 2006 [1].

See discussion page for explanation of 'NOT' qualifier.

complete

GO:0005886

plasma membrane

PMID:7607227

IDA: Inferred from Direct Assay

C

The NADH dehydrogenase I complex fractionates with cytoplasmic membranes.

complete

GO:0005506

iron ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0408

F

Seeded from EcoCyc (v14.0)

complete

Contributes to

GO:0003954

NADH dehydrogenase activity

PMID:3122832

IDA: Inferred from Direct Assay

F

Purified NADH dehydrogenase I in membrane vesicles can oxidize NADH.

complete

GO:0008137

NADH dehydrogenase (ubiquinone) activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001949

F

Seeded from EcoCyc (v14.0)

complete

GO:0051539

4 iron, 4 sulfur cluster binding

PMID:15922336

IMP: Inferred from Mutant Phenotype

F

Mutation of cysteine residues C351, C354, C357, or C398 eliminates the N3 4Fe-4S cluster in NuoF.

complete

GO:0010181

FMN binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001949

F

Seeded from EcoCyc (v14.0)

complete

Contributes to

GO:0010181

FMN binding

PMID:7607227

IDA: Inferred from Direct Assay

F

The water-soluble NADH fragment contains the subunits NuoE, NuoF, and NuoG. This fragment also contains FMN and has the EPR-detectable FeS clusters N1b, N1c, N3, and N4.

complete

GO:0010181

FMN binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011537

F

Seeded from EcoCyc (v14.0)

complete

GO:0030964

NADH dehydrogenase complex

PMID:7607227

IDA: Inferred from Direct Assay

C

The E. coli NADH dehydrogenase complex was purified and the subunits separated by SDS-PAGE. The N-termini of these 6 polypeptides were sequenced after deblocking with methanolic HCl.

complete

GO:0010181

FMN binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011538

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

F

Seeded from EcoCyc (v14.0)

complete

GO:0016651

oxidoreductase activity, acting on NADH or NADPH

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011537

F

Seeded from EcoCyc (v14.0)

complete

GO:0016651

oxidoreductase activity, acting on NADH or NADPH

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011538

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

GO:0048038

quinone binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0874

F

Seeded from EcoCyc (v14.0)

complete

GO:0050136

NADH dehydrogenase (quinone) activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.6.99.5

F

Seeded from EcoCyc (v14.0)

complete

GO:0051287

NAD or NADH binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011537

F

Seeded from EcoCyc (v14.0)

complete

GO:0051287

NAD or NADH binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011538

F

Seeded from EcoCyc (v14.0)

complete

GO:0051539

4 iron, 4 sulfur cluster binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001949

F

Seeded from EcoCyc (v14.0)

complete

GO:0051539

4 iron, 4 sulfur cluster binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011537

F

Seeded from EcoCyc (v14.0)

complete

GO:0051539

4 iron, 4 sulfur cluster binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011538

F

Seeded from EcoCyc (v14.0)

complete

GO:0051539

4 iron, 4 sulfur cluster binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0004

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001949

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011537

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of soluble NADH dehydrogenase fragment

could be indirect

Protein

nuoE

PMID:16606699

Experiment(s):EBI-1142426, EBI-1142433

Protein

fadB

PMID:16606699

Experiment(s):EBI-1142426

Protein

nuoG

PMID:16606699

Experiment(s):EBI-1142426

Protein

uvrB

PMID:16606699

Experiment(s):EBI-1142426

Protein

groL

PMID:16606699

Experiment(s):EBI-1142426

Protein

Subunits of NADH dehydrogenase I

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKNIIRTPET HPLTWRLRDD KQPVWLDEYR SKNGYEGARK ALTGLSPDEI VNQVKDAGLK
GRGGAGFSTG LKWSLMPKDE SMNIRYLLCN ADEMEPGTYK DRLLMEQLPH LLVEGMLISA
FALKAYRGYI FLRGEYIEAA VNLRRAIAEA TEAGLLGKNI MGTGFDFELF VHTGAGRYIC
GEETALINSL EGRRANPRSK PPFPATSGAW GKPTCVNNVE TLCNVPAILA NGVEWYQNIS
KSKDAGTKLM GFSGRVKNPG LWELPFGTTA REILEDYAGG MRDGLKFKAW QPGGAGTDFL
TEAHLDLPME FESIGKAGSR LGTALAMAVD HEINMVSLVR NLEEFFARES CGWCTPCRDG
LPWSVKILRA LERGEGQPGD IETLEQLCRF LGPGKTFCAH APGAVEPLQS AIKYFREEFE
AGIKQPFSNT HLINGIQPNL LKERW
Length

445

Mol. Wt

49.293 kDa

pI

6.8 (calculated)

Extinction coefficient

71,390 - 72,515 (calc based on 11 Y, 10 W, and 9 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

54..227

PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit

PMID:19920124

Domain

252..300

PF10531 SLBB domain

PMID:19920124

Domain

336..381

PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=nuoF taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130219

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946753

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007545

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P31979

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11774

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11774

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946753

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001708

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1723

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

6.13E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

9.227+/-0.487

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.249813014

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

2470

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

1034

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

1489

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

nuoABCEFGHIJKLMN

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2399557..2399597 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2284 (EcoliWiki Page)

NCBI GEO profiles for nuoF

microarray

GenExpDB:b2284 (EcoliWiki Page)

Summary of data for nuoF from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to nuoF Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11774

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1723

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2284

EcoGene

EcoGene:EG11774

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001708

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007545

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000000047 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000001141 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G08530 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000029026 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00025926 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00003831 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000016369 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-051127-15 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-051127-9 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040808-76 (score: 0.675)
  • ZDB-GENE-040808-73 (score: 0.675)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0191420 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0031771 (score: 1.000; bootstrap: 100%)
  • FBgn0034251 (score: 0.642)
  • FBgn0034007 (score: 0.228)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21571-PA (score: 1.000; bootstrap: 100%)
  • GA20825-PA (score: 0.194)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000020425 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000322450 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000024372 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000026666 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:107851 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000006828 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000024517 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC18E50 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000164562 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000129215 (score: 0.815)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00038859001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000007366 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

NUOF

From SHIGELLACYC

E. coli O157

NUOF

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit

Superfamily (EcoliWiki Page)

SUPERFAMILY:140490

Superfamily (EcoliWiki Page)

SUPERFAMILY:142019

Superfamily (EcoliWiki Page)

SUPERFAMILY:142984

Pfam (EcoliWiki Page)

PF10531 SLBB domain

Pfam (EcoliWiki Page)

PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region

EcoCyc

EcoCyc:EG11774

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11774

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001708

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1723

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007545

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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