hrpA:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

hrpA

Gene Synonym(s)

ECK1406, b1413, JW5905, moc[1]

Product Desc.

predicted ATP-dependent helicase, involved in mRNA processing[2][3]

RNA helicase-like; similarity to eukaryotic DEAH family[4]

Product Synonyms(s)

ATP-dependent helicase[1], B1413[2][1], HrpA[2][1] , ECK1406, JW5905, b1413

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): hrpA[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

hrpA

Mnemonic

Helicase-related protein

Synonyms

ECK1406, b1413, JW5905, moc[1]

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

31.92 minutes 

MG1655: 1481142..1484987
<gbrowseImage> name=NC_000913:1481142..1484987 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1452449..1456294
<gbrowseImage> name=NC_012967:1452449..1456294 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1373144..1377046
<gbrowseImage> name=NC_012759:1373144..1377046 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1484832..1488677
<gbrowseImage> name=NC_007779:1484832..1488677 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1571680..1575582
<gbrowseImage> name=NC_010473:1571680..1575582 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔhrpA (Keio:JW5905)

deletion

deletion

PMID:16738554

Shigen

hrpA::Tn5KAN-2 (FB20309)

Insertion at nt 1038 in Minus orientation

PMID:15262929

E. coli Genome Project:FB20309

does not contain pKD46

hrpA::Tn5KAN-2 (FB20310)

Insertion at nt 1038 in Minus orientation

PMID:15262929

E. coli Genome Project:FB20310

contains pKD46

ΔhrpA::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

Plasmid clone

Shigen

PMID:16769691

Status:

Primer 1:

Primer 2:

7F12

Kohara Phage

Genobase

PMID:3038334

3C9

Kohara Phage

Genobase

PMID:3038334

24D6

Kohara Phage

Genobase

PMID:3038334

zhj-3076::Tn10

Linked marker

CAG18640 = CGSC7453[5]

est. P1 cotransduction: 12% [6]

trg-2::Tn10

Linked marker

CAG12026 = CGSC7376[5]

est. P1 cotransduction: 64% [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G6732

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12936

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003325

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948444

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2772

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004718

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

HrpA

Synonyms

ATP-dependent helicase[1], B1413[2][1], HrpA[2][1] , ECK1406, JW5905, b1413

Product description

predicted ATP-dependent helicase, involved in mRNA processing[2][3]

RNA helicase-like; similarity to eukaryotic DEAH family[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0004386

helicase activity

PMID:15186427

IMP: Inferred from Mutant Phenotype

F

complete

GO:0009451

RNA modification

PMID:15186427

IMP: Inferred from Mutant Phenotype

P

complete

GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0003676

nucleic acid binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001650

F

Seeded from EcoCyc (v14.0)

complete

GO:0003676

nucleic acid binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011545

F

Seeded from EcoCyc (v14.0)

complete

GO:0004386

helicase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001650

F

Seeded from EcoCyc (v14.0)

complete

GO:0004386

helicase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007502

F

Seeded from EcoCyc (v14.0)

complete

GO:0004386

helicase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0347

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001650

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010222

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011545

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0008026

ATP-dependent helicase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010222

F

Seeded from EcoCyc (v14.0)

complete

GO:0008026

ATP-dependent helicase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011545

F

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc (v14.0)

complete

GO:0017111

nucleoside-triphosphatase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

aceE

PMID:15690043

Experiment(s):EBI-884859

Protein

aceF

PMID:15690043

Experiment(s):EBI-884859

Protein

lpdA

PMID:15690043

Experiment(s):EBI-884859

Protein

rplI

PMID:15690043

Experiment(s):EBI-884859

Protein

rpsA

PMID:15690043

Experiment(s):EBI-884859

Protein

rpsB

PMID:15690043

Experiment(s):EBI-884859

Protein

rpsC

PMID:15690043

Experiment(s):EBI-884859

Protein

rpsE

PMID:15690043

Experiment(s):EBI-884859

Protein

rpsG

PMID:15690043

Experiment(s):EBI-884859

Protein

rpsM

PMID:15690043

Experiment(s):EBI-884859

Protein

rpsS

PMID:15690043

Experiment(s):EBI-884859

Protein

tufA

PMID:15690043

Experiment(s):EBI-884859

Protein

yfiF

PMID:15690043

Experiment(s):EBI-884859

Protein

tufB

PMID:19402753

MALDI(Z-score):19.500516

Protein

rpsC

PMID:19402753

MALDI(Z-score):31.200902

Protein

rpsA

PMID:19402753

MALDI(Z-score):25.115542

Protein

rplA

PMID:19402753

MALDI(Z-score):24.337429

Protein

yfiF

PMID:19402753

MALDI(Z-score):37.301991

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MLRDRLRFSR RLHGVKKVKN PDAQQAIFQE MAKEIDQAAG KVLLREAARP EITYPDNLPV
SQKKQDILEA IRDHQVVIVA GETGSGKTTQ LPKICMELGR GIKGLIGHTQ PRRLAARTVA
NRIAEELKTE PGGCIGYKVR FSDHVSDNTM VKLMTDGILL AEIQQDRLLM QYDTIIIDEA
HERSLNIDFL LGYLKELLPR RPDLKIIITS ATIDPERFSR HFNNAPIIEV SGRTYPVEVR
YRPIVEEADD TERDQLQAIF DAVDELSQES HGDILIFMSG EREIRDTADA LNKLNLRHTE
ILPLYARLSN SEQNRVFQSH SGRRIVLATN VAETSLTVPG IKYVIDPGTA RISRYSYRTK
VQRLPIEPIS QASANQRKGR CGRVSEGICI RLYSEDDFLS RPEFTDPEIL RTNLASVILQ
MTALGLGDIA AFPFVEAPDK RNIQDGVRLL EELGAITTDE QASAYKLTPL GRQLSQLPVD
PRLARMVLEA QKHGCVREAM IITSALSIQD PRERPMDKQQ ASDEKHRRFH DKESDFLAFV
NLWNYLGEQQ KALSSNAFRR LCRTDYLNYL RVREWQDIYT QLRQVVKELG IPVNSEPAEY
REIHIALLTG LLSHIGMKDA DKQEYTGARN ARFSIFPGSG LFKKPPKWVM VAELVETSRL
WGRIAARIDP EWVEPVAQHL IKRTYSEPHW ERAQGAVMAT EKVTVYGLPI VAARKVNYSQ
IDPALCRELF IRHALVEGDW QTRHAFFREN LKLRAEVEEL EHKSRRRDIL VDDETLFEFY
DQRISHDVIS ARHFDSWWKK VSRETPDLLN FEKSMLIKEG AEKISKLDYP NFWHQGNLKL
RLSYQFEPGA DADGVTVHIP LPLLNQVEES GFEWQIPGLR RELVIALIKS LPKPVRRNFV
PAPNYAEAFL GRVKPLELPL LDSLERELRR MTGVTVDRED WHWDQVPDHL KITFRVVDDK
NKKLKEGRSL QDLKDALKGK VQETLSAVAD DGIEQSGLHI WSFGQLPESY EQKRGNYKVK
AWPALVDERD SVAIKLFDNP LEQKQAMWNG LRRLLLLNIP SPIKYLHEKL PNKAKLGLYF
NPYGKVLELI DDCISCGVDK LIDANGGPVW TEEGFAALHE KVRAELNDTV VDIAKQVEQI
LTAVFNINKR LKGRVDMTMA LGLSDIKAQM GGLVYRGFVT GNGFKRLGDT LRYLQAIEKR
LEKLAVDPHR DRAQMLKVEN VQQAWQQWIN KLPPARREDE DVKEIRWMIE ELRVSYFAQQ
LGTPYPISDK RILQAMEQIS G
Length

1,281

Mol. Wt

146.798 kDa

pI

8.0 (calculated)

Extinction coefficient

160,660 - 161,785 (calc based on 34 Y, 20 W, and 9 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

80..239

PF00270 DEAD/DEAH box helicase

PMID:19920124

Domain

464..559

PF04408 Helicase associated domain (HA2)

PMID:19920124

Domain

311..404

PF00271 Helicase conserved C-terminal domain

PMID:19920124

Domain

599..699

PF07717 Domain of unknown function (DUF1605)

PMID:19920124

Domain

711..1298

PF11898 Domain of unknown function (DUF3418)

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=hrpA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:145698255

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948444

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004718

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P43329

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6732

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12936

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948444

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003325

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2772

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

1.04E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

10.191+/-0.075

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.02496749

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

602

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

197

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

382

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

hrpA

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:1481122..1481162 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b1413 (EcoliWiki Page)

NCBI GEO profiles for hrpA

microarray

GenExpDB:b1413 (EcoliWiki Page)

Summary of data for hrpA from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (1480789..1481225) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ09; Well:G2[7]

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Notes

Accessions Related to hrpA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G6732

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2772

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1413

EcoGene

EcoGene:EG12936

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003325

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004718

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000021966 (score: 1.000; bootstrap: 98%)
  • ENSANGP00000015955 (score: 0.274)
  • ENSANGP00000025250 (score: 0.265)
  • ENSANGP00000011076 (score: 0.174)
  • ENSANGP00000018268 (score: 0.076)
  • ENSANGP00000026401 (score: 0.051)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000014076 (score: 1.000; bootstrap: 99%)
  • ENSAPMP00000028351 (score: 0.171)
  • ENSAPMP00000003901 (score: 0.139)
  • ENSAPMP00000007284 (score: 0.121)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G32490 (score: 1.000; bootstrap: 94%)
  • AT2G35340 (score: 0.788)
  • AT4G16680 (score: 0.399)
  • AT3G26560 (score: 0.238)
  • AT3G62310 (score: 0.175)
  • AT2G47250 (score: 0.173)
  • AT5G13010 (score: 0.154)
  • AT4G18465 (score: 0.122)
  • AT1G26370 (score: 0.098)
  • AT1G27900 (score: 0.081)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000011714 (score: 1.000; bootstrap: 89%)
  • ENSBTAP00000010976 (score: 0.225)
  • ENSBTAP00000009148 (score: 0.215)
  • ENSBTAP00000017640 (score: 0.114)
  • ENSBTAP00000007619 (score: 0.101)
  • ENSBTAP00000016932 (score: 0.088)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00025449 (score: 1.000; bootstrap: 96%)
  • WBGene00031433 (score: 0.190)
  • WBGene00039773 (score: 0.176)
  • WBGene00030655 (score: 0.119)
  • WBGene00035541 (score: 0.060)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00003393 (score: 1.000; bootstrap: 96%)
  • WBGene00003389 (score: 0.181)
  • WBGene00003392 (score: 0.170)
  • WBGene00018967 (score: 0.118)
  • WBGene00022056 (score: 0.058)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000021473 (score: 1.000; bootstrap: 92%)
  • ENSCAFP00000000627 (score: 0.198)
  • ENSCAFP00000030010 (score: 0.178)
  • ENSCAFP00000024285 (score: 0.131)
  • ENSCAFP00000013298 (score: 0.103)
  • ENSCAFP00000026005 (score: 0.057)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000003057 (score: 1.000; bootstrap: 92%)
  • ENSCINP00000013546 (score: 0.212)
  • ENSCINP00000007408 (score: 0.158)
  • ENSCINP00000005405 (score: 0.109)
  • ENSCINP00000018563 (score: 0.079)
  • ENSCINP00000014140 (score: 0.074)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-8589 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1013 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2076 (score: 0.174)
  • ZDB-GENE-040426-1144 (score: 0.174)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0189299 (score: 1.000; bootstrap: 94%)
  • DDB0186761 (score: 0.213)
  • DDB0191460 (score: 0.195)
  • DDB0190810 (score: 0.126)
  • DDB0186395 (score: 0.123)
  • DDB0190161 (score: 0.065)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0032759 (score: 1.000; bootstrap: 93%)
  • FBgn0033160 (score: 1.000; bootstrap: 93%)
  • FBgn0033898 (score: 0.272)
  • FBgn0026713 (score: 0.183)
  • FBgn0031631 (score: 0.077)
  • FBgn0032194 (score: 0.060)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10763-PA (score: 1.000; bootstrap: 95%)
  • GA10497-PA (score: 0.262)
  • GA20923-PA (score: 0.252)
  • GA16786-PA (score: 0.068)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000001799 (score: 1.000; bootstrap: 99%)
  • ENSGALP00000013749 (score: 0.373)
  • ENSGALP00000005786 (score: 0.101)
  • ENSGALP00000023214 (score: 0.100)
  • ENSGALP00000002489 (score: 0.084)
  • ENSGALP00000008220 (score: 0.059)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000295561 (score: 1.000; bootstrap: 91%)
  • ENSP00000262415 (score: 0.221)
  • ENSP00000259877 (score: 0.209)
  • ENSP00000268482 (score: 0.144)
  • ENSP00000252011 (score: 0.138)
  • ENSP00000284690 (score: 0.114)
  • ENSP00000225296 (score: 0.082)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000026247 (score: 1.000; bootstrap: 99%)
  • ENSMMUP00000015836 (score: 0.247)
  • ENSMMUP00000000912 (score: 0.215)
  • ENSMMUP00000004508 (score: 0.106)
  • ENSMMUP00000012608 (score: 0.074)
  • ENSMMUP00000008672 (score: 0.063)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000000619 (score: 1.000; bootstrap: 99%)
  • ENSMODP00000018968 (score: 0.251)
  • ENSMODP00000019829 (score: 0.212)
  • ENSMODP00000003098 (score: 0.146)
  • ENSMODP00000000589 (score: 0.137)
  • ENSMODP00000013132 (score: 0.113)
  • ENSMODP00000020777 (score: 0.088)
  • ENSMODP00000018083 (score: 0.052)

From Inparanoid:20070104

Mus musculus

  • MGI:1099786 (score: 1.000; bootstrap: 93%)
  • MGI:1306823 (score: 0.226)
  • MGI:1916442 (score: 0.214)
  • MGI:1927617 (score: 0.148)
  • MGI:2141813 (score: 0.121)
  • MGI:1918965 (score: 0.113)
  • MGI:2445102 (score: 0.088)

From Inparanoid:20070104

Oryza gramene

  • Q5Z9X4 (score: 1.000; bootstrap: 94%)
  • Q6I5X9 (score: 1.000; bootstrap: 92%)
  • Q6K4U8 (score: 0.725)
  • Q6YUI7 (score: 0.571)
  • Q7XIR8 (score: 0.189)
  • Q5QNI3 (score: 0.122)
  • Q69TI7 (score: 0.119)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000015736 (score: 1.000; bootstrap: 82%)
  • ENSPTRP00000030599 (score: 0.403)
  • ENSPTRP00000014240 (score: 0.342)
  • ENSPTRP00000027473 (score: 0.286)
  • ENSPTRP00000014730 (score: 0.164)
  • ENSPTRP00000023173 (score: 0.111)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000005126 (score: 1.000; bootstrap: 93%)
  • ENSRNOP00000028198 (score: 0.226)
  • ENSRNOP00000046021 (score: 0.205)
  • ENSRNOP00000019810 (score: 0.148)
  • ENSRNOP00000021435 (score: 0.119)
  • ENSRNOP00000024655 (score: 0.116)
  • ENSRNOP00000009468 (score: 0.083)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YER013W (score: 1.000; bootstrap: 100%)
  • YGL120C (score: 0.110)
  • YKR086W (score: 0.104)
  • YNR011C (score: 0.066)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC16H50c (score: 1.000; bootstrap: 95%)
  • SPAC10F62c (score: 0.243)
  • SPBC19C21 (score: 0.194)
  • SPBC17117 (score: 0.166)
  • SPAC2G111c (score: 0.114)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000145287 (score: 1.000; bootstrap: 99%)
  • NEWSINFRUP00000172140 (score: 0.241)
  • NEWSINFRUP00000129891 (score: 0.170)
  • NEWSINFRUP00000149086 (score: 0.143)
  • NEWSINFRUP00000163346 (score: 0.136)
  • NEWSINFRUP00000153948 (score: 0.089)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00021923001 (score: 1.000; bootstrap: 98%)
  • GSTENP00003895001 (score: 0.233)
  • GSTENP00017753001 (score: 0.223)
  • GSTENP00023248001 (score: 0.157)
  • GSTENP00007801001 (score: 0.059)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000032781 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

HRPA

From SHIGELLACYC

E. coli O157

HRPA

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00271 Helicase conserved C-terminal domain

Pfam (EcoliWiki Page)

PF04408 Helicase associated domain (HA2)

Pfam (EcoliWiki Page)

PF00270 DEAD/DEAH box helicase

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Panther (EcoliWiki Page)

PTHR18934:SF68

Pfam (EcoliWiki Page)

PF07717 Domain of unknown function (DUF1605)

Pfam (EcoliWiki Page)

PF11898 Domain of unknown function (DUF3418)

EcoCyc

EcoCyc:G6732

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12936

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003325

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2772

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004718

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

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