hrpA:Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000021966 (score: 1.000; bootstrap: 98%)
  • ENSANGP00000015955 (score: 0.274)
  • ENSANGP00000025250 (score: 0.265)
  • ENSANGP00000011076 (score: 0.174)
  • ENSANGP00000018268 (score: 0.076)
  • ENSANGP00000026401 (score: 0.051)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000014076 (score: 1.000; bootstrap: 99%)
  • ENSAPMP00000028351 (score: 0.171)
  • ENSAPMP00000003901 (score: 0.139)
  • ENSAPMP00000007284 (score: 0.121)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G32490 (score: 1.000; bootstrap: 94%)
  • AT2G35340 (score: 0.788)
  • AT4G16680 (score: 0.399)
  • AT3G26560 (score: 0.238)
  • AT3G62310 (score: 0.175)
  • AT2G47250 (score: 0.173)
  • AT5G13010 (score: 0.154)
  • AT4G18465 (score: 0.122)
  • AT1G26370 (score: 0.098)
  • AT1G27900 (score: 0.081)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000011714 (score: 1.000; bootstrap: 89%)
  • ENSBTAP00000010976 (score: 0.225)
  • ENSBTAP00000009148 (score: 0.215)
  • ENSBTAP00000017640 (score: 0.114)
  • ENSBTAP00000007619 (score: 0.101)
  • ENSBTAP00000016932 (score: 0.088)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00025449 (score: 1.000; bootstrap: 96%)
  • WBGene00031433 (score: 0.190)
  • WBGene00039773 (score: 0.176)
  • WBGene00030655 (score: 0.119)
  • WBGene00035541 (score: 0.060)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00003393 (score: 1.000; bootstrap: 96%)
  • WBGene00003389 (score: 0.181)
  • WBGene00003392 (score: 0.170)
  • WBGene00018967 (score: 0.118)
  • WBGene00022056 (score: 0.058)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000021473 (score: 1.000; bootstrap: 92%)
  • ENSCAFP00000000627 (score: 0.198)
  • ENSCAFP00000030010 (score: 0.178)
  • ENSCAFP00000024285 (score: 0.131)
  • ENSCAFP00000013298 (score: 0.103)
  • ENSCAFP00000026005 (score: 0.057)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000003057 (score: 1.000; bootstrap: 92%)
  • ENSCINP00000013546 (score: 0.212)
  • ENSCINP00000007408 (score: 0.158)
  • ENSCINP00000005405 (score: 0.109)
  • ENSCINP00000018563 (score: 0.079)
  • ENSCINP00000014140 (score: 0.074)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-8589 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1013 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2076 (score: 0.174)
  • ZDB-GENE-040426-1144 (score: 0.174)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0189299 (score: 1.000; bootstrap: 94%)
  • DDB0186761 (score: 0.213)
  • DDB0191460 (score: 0.195)
  • DDB0190810 (score: 0.126)
  • DDB0186395 (score: 0.123)
  • DDB0190161 (score: 0.065)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0032759 (score: 1.000; bootstrap: 93%)
  • FBgn0033160 (score: 1.000; bootstrap: 93%)
  • FBgn0033898 (score: 0.272)
  • FBgn0026713 (score: 0.183)
  • FBgn0031631 (score: 0.077)
  • FBgn0032194 (score: 0.060)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10763-PA (score: 1.000; bootstrap: 95%)
  • GA10497-PA (score: 0.262)
  • GA20923-PA (score: 0.252)
  • GA16786-PA (score: 0.068)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000001799 (score: 1.000; bootstrap: 99%)
  • ENSGALP00000013749 (score: 0.373)
  • ENSGALP00000005786 (score: 0.101)
  • ENSGALP00000023214 (score: 0.100)
  • ENSGALP00000002489 (score: 0.084)
  • ENSGALP00000008220 (score: 0.059)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000295561 (score: 1.000; bootstrap: 91%)
  • ENSP00000262415 (score: 0.221)
  • ENSP00000259877 (score: 0.209)
  • ENSP00000268482 (score: 0.144)
  • ENSP00000252011 (score: 0.138)
  • ENSP00000284690 (score: 0.114)
  • ENSP00000225296 (score: 0.082)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000026247 (score: 1.000; bootstrap: 99%)
  • ENSMMUP00000015836 (score: 0.247)
  • ENSMMUP00000000912 (score: 0.215)
  • ENSMMUP00000004508 (score: 0.106)
  • ENSMMUP00000012608 (score: 0.074)
  • ENSMMUP00000008672 (score: 0.063)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000000619 (score: 1.000; bootstrap: 99%)
  • ENSMODP00000018968 (score: 0.251)
  • ENSMODP00000019829 (score: 0.212)
  • ENSMODP00000003098 (score: 0.146)
  • ENSMODP00000000589 (score: 0.137)
  • ENSMODP00000013132 (score: 0.113)
  • ENSMODP00000020777 (score: 0.088)
  • ENSMODP00000018083 (score: 0.052)

From Inparanoid:20070104

Mus musculus

  • MGI:1099786 (score: 1.000; bootstrap: 93%)
  • MGI:1306823 (score: 0.226)
  • MGI:1916442 (score: 0.214)
  • MGI:1927617 (score: 0.148)
  • MGI:2141813 (score: 0.121)
  • MGI:1918965 (score: 0.113)
  • MGI:2445102 (score: 0.088)

From Inparanoid:20070104

Oryza gramene

  • Q5Z9X4 (score: 1.000; bootstrap: 94%)
  • Q6I5X9 (score: 1.000; bootstrap: 92%)
  • Q6K4U8 (score: 0.725)
  • Q6YUI7 (score: 0.571)
  • Q7XIR8 (score: 0.189)
  • Q5QNI3 (score: 0.122)
  • Q69TI7 (score: 0.119)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000015736 (score: 1.000; bootstrap: 82%)
  • ENSPTRP00000030599 (score: 0.403)
  • ENSPTRP00000014240 (score: 0.342)
  • ENSPTRP00000027473 (score: 0.286)
  • ENSPTRP00000014730 (score: 0.164)
  • ENSPTRP00000023173 (score: 0.111)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000005126 (score: 1.000; bootstrap: 93%)
  • ENSRNOP00000028198 (score: 0.226)
  • ENSRNOP00000046021 (score: 0.205)
  • ENSRNOP00000019810 (score: 0.148)
  • ENSRNOP00000021435 (score: 0.119)
  • ENSRNOP00000024655 (score: 0.116)
  • ENSRNOP00000009468 (score: 0.083)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YER013W (score: 1.000; bootstrap: 100%)
  • YGL120C (score: 0.110)
  • YKR086W (score: 0.104)
  • YNR011C (score: 0.066)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC16H50c (score: 1.000; bootstrap: 95%)
  • SPAC10F62c (score: 0.243)
  • SPBC19C21 (score: 0.194)
  • SPBC17117 (score: 0.166)
  • SPAC2G111c (score: 0.114)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000145287 (score: 1.000; bootstrap: 99%)
  • NEWSINFRUP00000172140 (score: 0.241)
  • NEWSINFRUP00000129891 (score: 0.170)
  • NEWSINFRUP00000149086 (score: 0.143)
  • NEWSINFRUP00000163346 (score: 0.136)
  • NEWSINFRUP00000153948 (score: 0.089)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00021923001 (score: 1.000; bootstrap: 98%)
  • GSTENP00003895001 (score: 0.233)
  • GSTENP00017753001 (score: 0.223)
  • GSTENP00023248001 (score: 0.157)
  • GSTENP00007801001 (score: 0.059)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000032781 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

HRPA

From SHIGELLACYC

E. coli O157

HRPA

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00271 Helicase conserved C-terminal domain

Pfam (EcoliWiki Page)

PF04408 Helicase associated domain (HA2)

Pfam (EcoliWiki Page)

PF00270 DEAD/DEAH box helicase

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Panther (EcoliWiki Page)

PTHR18934:SF68

Pfam (EcoliWiki Page)

PF07717 Domain of unknown function (DUF1605)

Pfam (EcoliWiki Page)

PF11898 Domain of unknown function (DUF3418)

EcoCyc

EcoCyc:G6732

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12936

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003325

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2772

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004718

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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Categories

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