eutC:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Standard Name

eutC

Gene Synonym(s)

ECK2435, b2440, JW2433[1], JW2433

Product Desc.

ethanolamine ammonia-lyase, probable catalytic subunit[2][3];

Component of ethanolamine ammonia-lyase[2][3]

Product Synonyms(s)

ethanolamine ammonia-lyase, small subunit (light chain)[1], B2440[2][1], EutC[2][1] , ECK2435, JW2433, b2440

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yfeG[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

eutC

Mnemonic

Ethanolamine utilization

Synonyms

ECK2435, b2440, JW2433[1], JW2433

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

55.06 minutes, 55.06 minutes 

MG1655: 2555319..2554432
<gbrowseImage> name=NC_000913:2554432..2555319 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2484816..2483929
<gbrowseImage> name=NC_012967:2483929..2484816 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2440237..2441124
<gbrowseImage> name=NC_012759:2440237..2441124 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2562743..2561856
<gbrowseImage> name=NC_007779:2561856..2562743 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2647084..2646197
<gbrowseImage> name=NC_010473:2646197..2647084 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

2554432

Edman degradation

PMID:2197274


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔeutC (Keio:JW2433)

deletion

deletion

PMID:16738554

Shigen
CGSC9939[4]

eutC::Tn5KAN-2 (FB20802)

Insertion at nt 221 in Minus orientation

PMID:15262929

E. coli Genome Project:FB20802

contains pKD46

ΔeutC769::kan

PMID:16738554

CGSC:100742


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes

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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2433

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGATCAAAAACAGATTGAAGA

Primer 2:CCTCGGGTCATGTTGATGCCGGA

E8E3

Kohara Phage

Genobase

PMID:3038334

4E10

Kohara Phage

Genobase

PMID:3038334

nupC510::Tn10

Linked marker

CAG18468 = CGSC7410[4]

est. P1 cotransduction: 14% [5]

purC80::Tn10

Linked marker

CAG18470 = CGSC7413[4]

est. P1 cotransduction: 19% [5]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG50007

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG50007

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002566

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946925

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4300

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008043

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

EutC

Synonyms

ethanolamine ammonia-lyase, small subunit (light chain)[1], B2440[2][1], EutC[2][1] , ECK2435, JW2433, b2440

Product description

ethanolamine ammonia-lyase, probable catalytic subunit[2][3];

Component of ethanolamine ammonia-lyase[2][3]

EC number (for enzymes)

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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0006520

cellular amino acid metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR009246

P

Seeded from EcoCyc (v14.0)

complete

GO:0008851

ethanolamine ammonia-lyase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00601

F

Seeded from EcoCyc (v14.0)

complete

GO:0008851

ethanolamine ammonia-lyase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR009246

F

Seeded from EcoCyc (v14.0)

complete

GO:0008851

ethanolamine ammonia-lyase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:4.3.1.7

F

Seeded from EcoCyc (v14.0)

complete

GO:0016829

lyase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0456

F

Seeded from EcoCyc (v14.0)

complete

GO:0031419

cobalamin binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0846

F

Seeded from EcoCyc (v14.0)

complete

GO:0050897

cobalt ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0170

F

Seeded from EcoCyc (v14.0)

complete

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of ethanolamine ammonia-lyase

could be indirect

Protein

phnN

PMID:16606699

Experiment(s):EBI-1142841

Protein

hchA

PMID:16606699

Experiment(s):EBI-1142841

Protein

rpsA

PMID:16606699

Experiment(s):EBI-1142841

Protein

dnaK

PMID:16606699

Experiment(s):EBI-1142841

Protein

nadE

PMID:16606699

Experiment(s):EBI-1142841

Protein

eutK

PMID:16606699

Experiment(s):EBI-1142841

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MDQKQIEEIV RSVMASMGQA APAPSEAKCA TTNCAAPVTS ESCALDLGSA EAKAWIGVEN
PHRADVLTEL RRSTVARVCT GRAGPRPRTQ ALLRFLADHS RSKDTVLKEV PEEWVKAQGL
LEVRSEISDK NLYLTRPDMG RRLCAEAVEA LKAQCVANPD VQVVISDGLS TDAITVNYEE
ILPPLMAGLK QAGLKVGTPF FVRYGRVKIE DQIGEILGAK VVILLVGERP GLGQSESLSC
YAVYSPRMAT TVEADRTCIS NIHQGGTPPV EAAAVIVDLA KRMLEQKASG INMTR
Length

295

Mol. Wt

31.78 kDa

pI

6.8 (calculated)

Extinction coefficient

18,450 - 19,450 (calc based on 5 Y, 2 W, and 8 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

60..294

PF05985 Ethanolamine ammonia-lyase light chain (EutC)

PMID:19920124

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=eutC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130365

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946925

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008043

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P19636

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG50007

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG50007

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946925

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002566

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4300

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MG1655

151

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

76

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

109

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

yfeG

Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2555299..2555339 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference


Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2440 (EcoliWiki Page)

NCBI GEO profiles for eutC

microarray

GenExpDB:b2440 (EcoliWiki Page)

Summary of data for eutC from multiple microarray studies


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

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Notes

Accessions Related to eutC Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG50007

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4300

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2440

EcoGene

EcoGene:EG50007

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002566

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008043

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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<protect> See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF05985 Ethanolamine ammonia-lyase light chain (EutC)

EcoCyc

EcoCyc:EG50007

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG50007

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002566

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4300

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008043

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
  5. 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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