hns:Gene: Difference between revisions
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|{{Sub}}[[#Sequence Features|Sequence Features]] | |||
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]] | |{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]] | ||
|{{Sub}}[[#Genetic Resources |Genetic Resources]] | |{{Sub}}[[#Genetic Resources |Genetic Resources]] | ||
Revision as of 23:04, 10 May 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
hns |
|---|---|
| Mnemonic |
Histone-like protein H-NS |
| Synonyms |
ECK1232, b1237, JW1225, bglY, cur, drc, drdX, drs, irk, mssyA, msyA, osmZ, pilG, topX, virR, hnsA, topS, B1, H1[1] |
| edit table |
Notes
Location(s) and DNA Sequence
See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
27.84 minutes |
MG1655: 1292145..1291732 |
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NC_012967: 1292716..1292303 |
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NC_012759: 1181230..1181643 |
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|
W3110 |
|
W3110: 1294499..1294086 |
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|
DH10B: 1332386..1331973 |
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| edit table |
Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
| edit table |
Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
Δhns (Keio:JW1225) |
deletion |
deletion |
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|
At position 323 in Plus orientation, does not contain plasmid pKD46. | |||||||
|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire D-Galactoniate |
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|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire D-Galacturonate |
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|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire D-Glucuronate |
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|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire Acetate |
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|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire a-Hydroxybutyrate |
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|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire a-Ketobutyrate |
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|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire a-Ketoglutarate |
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|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire Succinate |
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|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire Bromosuccinate |
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|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire L-Alanine |
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|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire L-Asparagine |
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|
Δhns::kan |
deletion |
Biolog:respiration |
unable to respire L-Aspartate |
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|
hns-206 |
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|
hns-1 |
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|
Δhns-746::kan |
| ||||||
| edit table |
Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW1225 |
Plasmid clone |
Status:Clone OK Primer 1:GCCAGCGAAGCACTTAAAATTCT Primer 2:CCTTGCTTGATCAGGAAATCGTC | |
|
Linked marker |
est. P1 cotransduction: 5% [7] | ||
|
Linked marker |
est. P1 cotransduction: 66% [7] | ||
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
| ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ 3.0 3.1 3.2 CGSC: The Coli Genetics Stock Center
- ↑ Glasner, JD et al. (2003) ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Res. 31 147-51 PubMed
- ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 Ito, M et al. (2005) Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays. Metab. Eng. 7 318-27 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).