yebA:Gene
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Location(s) and DNA Sequence | Sequence Features | Alleles and Phenotypes | Genetic Interactions | Genetic Resources | Accessions | Links | References | Suggestions |
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
| Standard name |
yebA |
|---|---|
| Mnemonic |
Systematic nomenclature |
| Synonyms | |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
| Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
|---|---|---|---|---|
|
MG1655 |
41.78 minutes |
MG1655: 1939659..1938337 |
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NC_012967: 1920148..1918889 |
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NC_012759: 1830396..1831718 |
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W3110 |
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W3110: 1943349..1942027 |
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DH10B: 2030230..2028908 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
| Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
|---|---|---|---|---|---|
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
| Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
|---|---|---|---|---|---|---|---|
|
ΔyebA (Keio:JW5304) |
deletion |
deletion |
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yebA::Tn5KAN-I-SceI (FB20476) |
Insertion at nt 506 in Minus orientation |
contains pKD46 | |||||
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ΔyebA::kan |
deletion |
Biolog:respiration |
unable to respire Acetate |
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ΔyebA::kan |
deletion |
Biolog:respiration |
unable to respire a-Hydroxybutyrate |
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ΔyebA::kan |
deletion |
Biolog:respiration |
unable to respire a-Ketobutyrate |
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ΔyebA::kan |
deletion |
Biolog:respiration |
unable to respire a-Ketoglutarate |
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ΔyebA::kan |
deletion |
Biolog:respiration |
unable to respire Succinate |
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ΔyebA::kan |
deletion |
Biolog:respiration |
unable to respire L-Alanine |
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ΔyebA |
deletion |
deletion |
Cell Shape |
defect in cell separation |
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ΔyebA ΔenvC |
deletion |
deletion |
Cell Shape |
defect in cell separation |
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ΔyebA ΔnlpD |
deletion |
deletion |
Cell Shape |
defect in cell separation |
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ΔyebA ΔygeR |
deletion |
deletion |
Cell Shape |
defect in cell separation |
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ΔyebA ΔenvC ΔnlpD |
deletion |
deletion |
Cell Shape |
defect in cell separation |
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ΔyebA ΔenvC ΔygeR |
deletion |
deletion |
Cell Shape |
defect in cell separation |
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ΔyebA ΔnlpD ΔygeR |
deletion |
deletion |
Cell Shape |
defect in cell separation |
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ΔyebA ΔnlpD ΔygeR ΔenvC |
deletion |
deletion |
Cell Shape |
defect in cell separation |
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Notes
Genetic Interactions
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| Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
|---|---|---|---|---|---|---|
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
| Resource | Resource Type | Source | Notes/Reference |
|---|---|---|---|
|
JW5304 |
Plasmid clone |
Status:Clone OK Primer 1:GCCCAACAGATAGCCCGCTCTGT Primer 2:CCATCAAACCGTAGCTGCGGCAC | |
|
Linked marker |
est. P1 cotransduction: 76% [9] | ||
|
Linked marker |
est. P1 cotransduction: 8% [9] | ||
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
- ↑ Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
- ↑ 5.0 5.1 5.2 5.3 5.4 5.5 Ito, M et al. (2005) Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays. Metab. Eng. 7 318-27 PubMed
- ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 Uehara, T et al. (2009) LytM-domain factors are required for daughter cell separation and rapid ampicillin-induced lysis in Escherichia coli. J. Bacteriol. 191 5094-107 PubMed
- ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
- ↑ 8.0 8.1 CGSC: The Coli Genetics Stock Center
- ↑ 9.0 9.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
