uvrD:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

uvrD

Gene Synonym(s)

ECK3808, b3813, JW3786, dar-2, dda, mutU, pdeB, rad, recL, srjC, uvr502, uvrE[1], uvrE

Product Desc.

DNA-dependent ATPase I and helicase II[2][3];

Component of UvrABC Nucleotide Excision Repair Complex[2][3]

ATP-dependent 3'-5' DNA helicase II; unwinds forked DNA structures; dismantles the RecA nucleoprotein filament; increased rates of spontaneous mutagenesis[4]

Product Synonyms(s)

DNA-dependent ATPase I and helicase II[1], B3813[2][1], UvrE[2][1], SrjC[2][1], Rad[2][1], Dda[2][1], RecL[2][1], PdeB[2][1], MutU[2][1], UvrD[2][1] , dar-2, dda, ECK3808, JW3786, mutU, pdeB, rad, recL, srjC, uvr502, uvrE, b3813

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): uvrD[2], OP00099

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

uvrD

Mnemonic

UV resistant

Synonyms

ECK3808, b3813, JW3786, dar-2, dda, mutU, pdeB, rad, recL, srjC, uvr502, uvrE[1], uvrE

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

86.13 minutes, 86.13 minutes 

MG1655: 3996006..3998168
<gbrowseImage> name=NC_000913:3996006..3998168 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3959820..3961982
<gbrowseImage> name=NC_012967:3959820..3961982 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3885675..3887837
<gbrowseImage> name=NC_012759:3885675..3887837 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3638698..3636536
<gbrowseImage> name=NC_007779:3636536..3638698 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4094926..4097088
<gbrowseImage> name=NC_010473:4094926..4097088 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

3996006

Edman degradation

PMID:2943729


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔuvrD (Keio:JW3786)

deletion

deletion

PMID:16738554

Shigen
CGSC10752[5]

uvrDG30D

G30D

(in uvrD252, which is UV sensitive)

Strain variation; seeded from UniProt:P03018

uvrD3

CGSC:5936

uvrD156

CGSC:8182

uvrD252

PMID:8419285

CGSC:8959

uvrD502

PMID:4345920 PMID:4946852 PMID:4576008 PMID:5341964

CGSC:10117

uvrD282::Tn5

CGSC:10732

uvrD291(del-ins,::tet)

CGSC:28618

ΔuvrD769::kan

PMID:16738554

CGSC:103348


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3786

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGACGTTTCTTACCTGCTCGA

Primer 2:CCaACCGACTCCAGCCGGGCGTA

7G3

Kohara Phage

Genobase

PMID:3038334

12G1

Kohara Phage

Genobase

PMID:3038334

ilvD500::Tn10

Linked marker

CAG18431 = CGSC7462[5]

est. P1 cotransduction: 15% [6]
Synonyms:ilv500::Tn10

metEo-3079::Tn10

Linked marker

CAG18491 = CGSC7464[5]

est. P1 cotransduction: 64% [6]
Synonyms:metE3079::Tn10 nnnThe Tn10 in CAG13491 is inserted in the metE regulatory region, but causes a Met- phenotype.

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11064

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11064

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001053

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948347

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1057

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012455

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

UvrD

Synonyms

DNA-dependent ATPase I and helicase II[1], B3813[2][1], UvrE[2][1], SrjC[2][1], Rad[2][1], Dda[2][1], RecL[2][1], PdeB[2][1], MutU[2][1], UvrD[2][1] , dar-2, dda, ECK3808, JW3786, mutU, pdeB, rad, recL, srjC, uvr502, uvrE, b3813

Product description

DNA-dependent ATPase I and helicase II[2][3];

Component of UvrABC Nucleotide Excision Repair Complex[2][3]

ATP-dependent 3'-5' DNA helicase II; unwinds forked DNA structures; dismantles the RecA nucleoprotein filament; increased rates of spontaneous mutagenesis[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000212

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0238

F

Seeded from EcoCyc (v14.0)

complete

GO:0004003

ATP-dependent DNA helicase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000212

F

Seeded from EcoCyc (v14.0)

complete

GO:0004003

ATP-dependent DNA helicase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005753

F

Seeded from EcoCyc (v14.0)

complete

GO:0004386

helicase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0347

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000212

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014016

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014017

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005753

C

Seeded from EcoCyc (v14.0)

complete

GO:0006260

DNA replication

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0235

P

Seeded from EcoCyc (v14.0)

complete

GO:0006268

DNA unwinding involved in replication

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005753

P

Seeded from EcoCyc (v14.0)

complete

GO:0006281

DNA repair

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000212

P

Seeded from EcoCyc (v14.0)

complete

GO:0006281

DNA repair

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0234

P

Seeded from EcoCyc (v14.0)

complete

GO:0006974

response to DNA damage stimulus

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0227

P

Seeded from EcoCyc (v14.0)

complete

GO:0009432

SOS response

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0742

P

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014016

F

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014017

F

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of UvrABC Nucleotide Excision Repair Complex

could be indirect

Protein

lpdA

PMID:15690043

Experiment(s):EBI-881212, EBI-888366

Protein

metE

PMID:16606699

Experiment(s):EBI-1146727

Protein

ssnA

PMID:15690043

Experiment(s):EBI-888366

Protein

clpA

PMID:15690043

Experiment(s):EBI-888366

Protein

dgt

PMID:15690043

Experiment(s):EBI-888366

Protein

fis

PMID:15690043

Experiment(s):EBI-888366

Protein

hns

PMID:15690043

Experiment(s):EBI-888366

Protein

hupA

PMID:15690043

Experiment(s):EBI-888366

Protein

hupB

PMID:15690043

Experiment(s):EBI-888366

Protein

malP

PMID:15690043

Experiment(s):EBI-888366

Protein

pepN

PMID:15690043

Experiment(s):EBI-888366

Protein

rplC

PMID:15690043

Experiment(s):EBI-888366

Protein

rplL

PMID:15690043

Experiment(s):EBI-888366

Protein

rplM

PMID:15690043

Experiment(s):EBI-888366

Protein

rplV

PMID:15690043

Experiment(s):EBI-888366

Protein

rplW

PMID:15690043

Experiment(s):EBI-888366

Protein

rpmC

PMID:15690043

Experiment(s):EBI-888366

Protein

rpoB

PMID:15690043

Experiment(s):EBI-888366

Protein

rpsB

PMID:15690043

Experiment(s):EBI-888366

Protein

rpsE

PMID:15690043

Experiment(s):EBI-888366

Protein

rpsF

PMID:15690043

Experiment(s):EBI-888366

Protein

rpsG

PMID:15690043

Experiment(s):EBI-888366

Protein

rpsN

PMID:15690043

Experiment(s):EBI-888366

Protein

secA

PMID:15690043

Experiment(s):EBI-888366

Protein

tgt

PMID:15690043

Experiment(s):EBI-888366

Protein

metN

PMID:15690043

Experiment(s):EBI-888366

Protein

accA

PMID:15690043

Experiment(s):EBI-888366

Protein

aceE

PMID:15690043

Experiment(s):EBI-888366

Protein

aceF

PMID:15690043

Experiment(s):EBI-888366

Protein

araG

PMID:15690043

Experiment(s):EBI-888366

Protein

agaR

PMID:15690043

Experiment(s):EBI-888366

Protein

pqiB

PMID:15690043

Experiment(s):EBI-888366

Protein

metN

PMID:19402753

LCMS(ID Probability):99.0

Protein

malP

PMID:19402753

LCMS(ID Probability):99.0

Protein

pepN

PMID:19402753

LCMS(ID Probability):99.0

Protein

tgt

PMID:19402753

LCMS(ID Probability):99.0

Protein

rpoB

PMID:19402753

LCMS(ID Probability):99.0

Protein

fis

PMID:19402753

LCMS(ID Probability):99.0

Protein

clpA

PMID:19402753

LCMS(ID Probability):99.0

Protein

pqiB

PMID:19402753

LCMS(ID Probability):99.0

Protein

agaR

PMID:19402753

LCMS(ID Probability):99.0

Protein

araG

PMID:19402753

LCMS(ID Probability):99.0

Protein

ssnA

PMID:19402753

LCMS(ID Probability):99.0

Protein

dgt

PMID:19402753

LCMS(ID Probability):99.0

Protein

MutL

PMID:9880500

2 Hybrid Screen

Protein

MutL

C-terminal 218 amino acids of MutL were sufficient to produce the two-hybrid interaction with UvrD

PMID:9482750

2 Hybrid Screen

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MDVSYLLDSL NDKQREAVAA PRSNLLVLAG AGSGKTRVLV HRIAWLMSVE NCSPYSIMAV
TFTNKAAAEM RHRIGQLMGT SQGGMWVGTF HGLAHRLLRA HHMDANLPQD FQILDSEDQL
RLLKRLIKAM NLDEKQWPPR QAMWYINSQK DEGLRPHHIQ SYGNPVEQTW QKVYQAYQEA
CDRAGLVDFA ELLLRAHELW LNKPHILQHY RERFTNILVD EFQDTNNIQY AWIRLLAGDT
GKVMIVGDDD QSIYGWRGAQ VENIQRFLND FPGAETIRLE QNYRSTSNIL SAANALIENN
NGRLGKKLWT DGADGEPISL YCAFNELDEA RFVVNRIKTW QDNGGALAEC AILYRSNAQS
RVLEEALLQA SMPYRIYGGM RFFERQEIKD ALSYLRLIAN RNDDAAFERV VNTPTRGIGD
RTLDVVRQTS RDRQLTLWQA CRELLQEKAL AGRAASALQR FMELIDALAQ ETADMPLHVQ
TDRVIKDSGL RTMYEQEKGE KGQTRIENLE ELVTATRQFS YNEEDEDLMP LQAFLSHAAL
EAGEGQADTW QDAVQLMTLH SAKGLEFPQV FIVGMEEGMF PSQMSLDEGG RLEEERRLAY
VGVTRAMQKL TLTYAETRRL YGKEVYHRPS RFIGELPEEC VEEVRLRATV SRPVSHQRMG
TPMVENDSGY KLGQRVRHAK FGEGTIVNME GSGEHSRLQV AFQGQGIKWL VAAYARLESV
Length

720

Mol. Wt

81.99 kDa

pI

6.2 (calculated)

Extinction coefficient

105,770 - 106,520 (calc based on 23 Y, 13 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

10..490

PF00580 UvrD/REP helicase

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=uvrD taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131665

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948347

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012455

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P03018

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11064

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11064

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948347

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001053

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1057

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

9.26E+01

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

20.437+/-0.095

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.044634598

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

551

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

126

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

322

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

uvrD

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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3995986..3996026 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3813 (EcoliWiki Page)

NCBI GEO profiles for uvrD

microarray

GenExpDB:b3813 (EcoliWiki Page)

Summary of data for uvrD from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (3995429..3995664) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ20; Well:E7[7]

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Notes

Accessions Related to uvrD Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11064

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1057

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3813

EcoGene

EcoGene:EG11064

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001053

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012455

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000026079 (score: 1.000; bootstrap: 100%)
  • YP_026251 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • YP_026251 (score: 1.000; bootstrap: 98%)
  • AT4G25120 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1354699 (score: 1.000; bootstrap: 100%)
  • YP_026251 (score: 0.063)

From Inparanoid:20070104

Oryza gramene

  • YP_026251 (score: 0.140)
  • Q6ZHK2 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YP_026251 (score: 1.000; bootstrap: 96%)
  • YJL092W (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • YP_026251 (score: 0.096)
  • SPAC4H35 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

UVRD

From SHIGELLACYC

E. coli O157

UVRD

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Pfam (EcoliWiki Page)

PF00580 UvrD/REP helicase

EcoCyc

EcoCyc:EG11064

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11064

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001053

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1057

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012455

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 1.17 1.18 1.19 1.20 1.21 1.22 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 2.20 2.21 2.22 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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