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On One Page

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Gene |

Product(s) |

Expression|

Evolution |

References |

Quickview

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Standard Name	umuC
Gene Synonym(s)	ECK1172, b1184, JW1173, uvm^[1], uvm
Product Desc.	SOS mutagenesis and repair^[2]^[3]; Component of DNA polymerase V^[3] DNA polymerase V subunit, capable of translesion synthesis; polymerase activity subunit; UV induction of mutations, error-prone repair; forms complex with UmuD and UmuD'; intrinsic AP lyase activity; lexA regulon^[4]
Product Synonyms(s)	DNA polymerase V, subunit C^[1], B1184^[2]^[1], Uvm^[2]^[1], UmuC^[2]^[1] , ECK1172, JW1173, uvm, b1184
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): umuDC^[2], OP00250
Regulation/Activity
Quick Links
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Notes

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ATPgammaS inhibits UmuC activity. Lesion bypass requires the assembly of RecA nucleoprotein filaments, thus single-stranded gaps of greater than 100 nucleotides are required.^[4]

Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	umuC
Mnemonic	UV mutator
Synonyms	ECK1172, b1184, JW1173, uvm^[1], uvm
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	26.52 minutes	MG1655: 1230409..1231677 <gbrowseImage> name=NC_000913:1230409..1231677 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 1231336..1232604 <gbrowseImage> name=NC_012967:1231336..1232604 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 1119130..1120398 <gbrowseImage> name=NC_012759:1119130..1120398 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 1232763..1234031 <gbrowseImage> name=NC_007779:1232763..1234031 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 1270650..1271918 <gbrowseImage> name=NC_010473:1270650..1271918 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Type	Phenotype: Description	Reference	Availability	Comments
umuC(del) (Keio:JW1173)	deletion	deletion			PMID:16738554	Shigen CGSC9080^[5]
umuC::Tn5KAN-2 (FB20263)	Insertion at nt 565 in Plus orientation				PMID:15262929	E. coli Genome Project:FB20263	does not contain pKD46
umuCE75K		E75K		In umuC36; non-mutable			seeded from UniProt:P04152
umuCD101N		D101N		In umuC104; non-mutable			seeded from UniProt:P04152
umuCT290K		T290K		In umuC25; non-mutable			seeded from UniProt:P04152
umuC36						CGSC:9573
umuC122::Tn5						CGSC:28635
umuC104						CGSC:46691
umuC25						CGSC:46692
umuC773(del)::kan					PMID:16738554	CGSC:103320
umuD'C N32A	Changing the amino acid Alanine at the 32 position causing the deletion of umuD'C		Sensitivity to	Increase sensitivity to UV radiation	PMID:21784925		See Fig 2A
umuD'C N33A	Changing the amino acid Alanine at the 33 position causing the deletion of umuD'C		Sensitivity to	Increased sensitivity to UV radiation	PMID:21784925		See Fig 2A
umuD'C D34A	Changing the amino acid Alanine at the 32 position causing the deletion of umuD'C		Sensitivity to	Increase sensitivity to UV radiation	PMID:21784925		See Fig 2A
umuD'C(del) D34N	Substitution of ending amino acid to Asn	Ala to Asn	Sensitivity to	Increase sensitivity to UV radiation	PMID:21784925		See Fig 2B
umuD'C(del) D34E	Substitution of ending amino acid to Glu	Ala to Glu	Sensitivity to	Increase sensitivity to UV radiation	PMID:21784925		See Fig 2B
umuDC E15D	Over expression of Beta processivity clamp	E to D.	Sensitivity to	There is decrease in the sensitivity of cold.	PMID:19633075		See figures 1A and 1B
(umuDC)595(del)::cat	Deletion of umuDC operon and replaced with chloramephenicol acetylransferase gene (cat)		Sensitivity to	Sensitivity toward UV radiation was moderately increased.	PMID:10430924	RW82 7280	See Figure 1.
polB(del)umuDC(del)	Deletion of araD-polB operon and replaced with omega cassette. Deletion of umuDC operon and replaced with chloramephenicol acetylransferase gene (cat)		Sensitivity to	Sensitivity toward UV radiation was increased by 2 to 3 fold.	PMID:10430924		See Figure 1.
(umuDC)595(del)::cat	Deletion of umuDC operon and replaced with chloramephenicol acetylransferase gene (cat)		Rate of replication	There was a slight delay in the resumption of DNA replication after exposure to UV radiation.	PMID:10430924	RW82 7280	See Figure 2
polB(del)umuDC(del)	Deletion of araD-polB operon and replaced with omega cassette. Deletion of umuDC operon and replaced with chloramephenicol acetylransferase gene (cat)		rate of replication	There was a significant delay in the resumption of DNA replication after exposure to UV radiation.	PMID:10430924		See Figure 3.
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW1173	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCTTTGCCCTCTGTGATGTAAA Primer 2:CCTTTGACCCTCAGTAAATCAGA
2A3	Kohara Phage	Genobase	PMID:3038334
11G8	Kohara Phage	Genobase	PMID:3038334
zcf-117::Tn10	Linked marker	CAG18463 = CGSC7363^[5]	est. P1 cotransduction: 49% ^[6]
fadR13::Tn10	Linked marker	CAG18497 = CGSC7365^[5]	est. P1 cotransduction: 88% ^[6]
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG11056	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11056	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001045	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:946359	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1049	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0003977	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	UmuC
Synonyms	DNA polymerase V, subunit C^[1], B1184^[2]^[1], Uvm^[2]^[1], UmuC^[2]^[1] , ECK1172, JW1173, uvm, b1184
Product description	SOS mutagenesis and repair^[2]^[3]; Component of DNA polymerase V^[3] DNA polymerase V subunit, capable of translesion synthesis; polymerase activity subunit; UV induction of mutations, error-prone repair; forms complex with UmuD and UmuD'; intrinsic AP lyase activity; lexA regulon^[4]
EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0000287	magnesium ion binding	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01113	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003677	DNA binding	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01113	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003684	damaged DNA binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001126	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003684	damaged DNA binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017961	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003684	damaged DNA binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017963	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003887	DNA-directed DNA polymerase activity	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01113	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003887	DNA-directed DNA polymerase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001126	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003887	DNA-directed DNA polymerase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017961	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016021	integral to membrane	PMID:2552436	IDA: Inferred from Direct Assay		C		complete
	GO:0003887	DNA-directed DNA polymerase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017963	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005515	protein binding	PMID:2552436	IPI: Inferred from Physical Interaction	EcoliWiki:umuD	F		complete
	GO:0005737	cytoplasm	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01113	C	Seeded from EcoCyc (v14.0)	complete
	GO:0006261	DNA-dependent DNA replication	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01113	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006281	DNA repair	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01113	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006281	DNA repair	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001126	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006281	DNA repair	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017961	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006281	DNA repair	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR017963	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006281	DNA repair	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0234	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006974	response to DNA damage stimulus	PMID:10760155	IEP: Inferred from Expression Pattern		P		complete
	GO:0006974	response to DNA damage stimulus	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0227	P	Seeded from EcoCyc (v14.0)	complete
	GO:0009432	SOS response	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0742	P	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of DNA polymerase V	could be indirect
Protein	rplW		PMID:19402753	LCMS(ID Probability):99.6
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MFALCDVNAF YASCETVFRP DLWGKPVVVL SNNDGCVIAR NAEAKALGVK MGDPWFKQKD LFRRCGVVCF SSNYELYADM SNRVMSTLEE LSPRVEIYSI DEAFCDLTGV RNCRDLTDFG REIRATVLQR THLTVGVGIA QTKTLAKLAN HAAKKWQRQT GGVVDLSNLE RQRKLMSALP VDDVWGIGRR ISKKLDAMGI KTVLDLADTD IRFIRKHFNV VLERTVRELR GEPCLQLEEF APTKQEIICS RSFGERITDY PSMRQAICSY AARAAEKLRS EHQYCRFIST FIKTSPFALN EPYYGNSASV KLLTPTQDSR DIINAATRSL DAIWQAGHRY QKAGVMLGDF FSQGVAQLNL FDDNAPRPGS EQLMTVMDTL NAKEGRGTLY FAGQGIQQQW QMKRAMLSPR YTTRSSDLLR VK
Length	422
Mol. Wt	47.68 kDa
pI	9.1 (calculated)
Extinction coefficient	50,880 - 52,255 (calc based on 12 Y, 6 W, and 11 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	References
Domain	5..151	PF00817 impB/mucB/samB family	PMID:19920124
Domain	168..200	PF11798 IMS family HHH motif	PMID:19920124
Domain	212..343	PF11799 impB/mucB/samB family C-terminal	PMID:19920124
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=umuC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16129147	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:946359	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0003977	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P04152	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG11056	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11056	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:946359	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001045	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1049	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	E. coli K-12 MG1655	30	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	12	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	16^a	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
umuDC
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Figure courtesy of RegulonDB

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Notes

LexA-regulated ^[7]

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:1230389..1230429 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b1184 (EcoliWiki Page)	NCBI GEO profiles for umuC
microarray	GenExpDB:b1184 (EcoliWiki Page)	Summary of data for umuC from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to umuC Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG11056	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1049	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b1184
EcoGene	EcoGene:EG11056	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001045	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0003977	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Shigella flexneri	UMUC	From SHIGELLACYC
E. coli O157	UMUC	From ECOO157CYC
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF00817 impB/mucB/samB family
Panther (EcoliWiki Page)	PTHR11076:SF25
Superfamily (EcoliWiki Page)	SUPERFAMILY:56672
Superfamily (EcoliWiki Page)	SUPERFAMILY:100879
Pfam (EcoliWiki Page)	PF11798 IMS family HHH motif
Pfam (EcoliWiki Page)	PF11799 impB/mucB/samB family C-terminal
EcoCyc	EcoCyc:EG11056	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11056	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001045	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1049	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0003977	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 ^1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 ^2.7 ^2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
↑ Fernández De Henestrosa, AR et al. (2000) Identification of additional genes belonging to the LexA regulon in Escherichia coli. Mol. Microbiol. 35 1560-72 PubMed

umuC:On One Page

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Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to umuC Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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