ruvB:On One Page

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

<protect>

Standard Name

ruvB

Gene Synonym(s)

ECK1861, b1860, JW1849[1], JW1849

Product Desc.

branch migration of Holliday structures; repair helicase[2][3];

Component of resolvasome[2][3]

DNA helicase driving branch migration during recombination; hexameric ring[4]

Product Synonyms(s)

ATP-dependent DNA helicase, component of RuvABC resolvasome[1], B1860[2][1], RuvB[2][1] , ECK1861, JW1849, b1860

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ruvAB[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

edit table

</protect> See Help:Quickview for help with entering information in the Quickview table. <protect></protect>

Notes

[back to top]


May directly convert replication forks into Holliday junctions. Required for replication forks reversal in certain replication mutants. ATP-dependent. LexA regulon.[4]



Gene

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css> <protect>

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ruvB

Mnemonic

Resistance to UV light

Synonyms

ECK1861, b1860, JW1849[1], JW1849

edit table

</protect>

Notes

Location(s) and DNA Sequence

[back to top]


<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

41.86 minutes, 41.86 minutes 

MG1655: 1943380..1942370
<gbrowseImage> name=NC_000913:1942370..1943380 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1924126..1923116
<gbrowseImage> name=NC_012967:1923116..1924126 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1834429..1835439
<gbrowseImage> name=NC_012759:1834429..1835439 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1947070..1946060
<gbrowseImage> name=NC_007779:1946060..1947070 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2033951..2032941
<gbrowseImage> name=NC_010473:2032941..2033951 source=DH10B preset=GeneLocation </gbrowseImage>

edit table

</protect>

Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
edit table

<protect></protect>

Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔruvB (Keio:JW1849)

deletion

deletion

PMID:16738554

Shigen
CGSC9543[5]

ΔruvB::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938

ruvB52

CGSC:25128

ΔruvB785::kan

PMID:16738554

CGSC:102854


edit table

<protect></protect>

Notes

Genetic Interactions

[back to top]


<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
edit table

</protect>

Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW1849

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCATTGAAGCAGACCGTCTGAT

Primer 2:CCtGGCATTTCTGGCGGCGTTAT

20H4

Kohara Phage

Genobase

PMID:3038334

eda-51::Tn10

Linked marker

CAG18486 = CGSC7392[5]

est. P1 cotransduction: 65% [6]

uvrC279::Tn10

Linked marker

CAG12156 = CGSC7394[5]

est. P1 cotransduction: 11% [6]

edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:RUVB

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10924

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004476

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946371

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0917

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006204

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]



Product(s)

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RuvB

Synonyms

ATP-dependent DNA helicase, component of RuvABC resolvasome[1], B1860[2][1], RuvB[2][1] , ECK1861, JW1849, b1860

Product description

branch migration of Holliday structures; repair helicase[2][3];

Component of resolvasome[2][3]

DNA helicase driving branch migration during recombination; hexameric ring[4]

EC number (for enzymes)
edit table

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004605

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008823

F

Seeded from EcoCyc (v14.0)

complete

GO:0004386

helicase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0347

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00016

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004605

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0006281

DNA repair

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00016

P

Seeded from EcoCyc (v14.0)

complete

GO:0006281

DNA repair

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004605

P

Seeded from EcoCyc (v14.0)

complete

GO:0006281

DNA repair

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008823

P

Seeded from EcoCyc (v14.0)

complete

GO:0006281

DNA repair

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008824

P

Seeded from EcoCyc (v14.0)

complete

GO:0006281

DNA repair

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0234

P

Seeded from EcoCyc (v14.0)

complete

GO:0006310

DNA recombination

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00016

P

Seeded from EcoCyc (v14.0)

complete

GO:0006310

DNA recombination

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004605

P

Seeded from EcoCyc (v14.0)

complete

GO:0006310

DNA recombination

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008823

P

Seeded from EcoCyc (v14.0)

complete

GO:0006310

DNA recombination

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008824

P

Seeded from EcoCyc (v14.0)

complete

GO:0006310

DNA recombination

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0233

P

Seeded from EcoCyc (v14.0)

complete

GO:0006974

response to DNA damage stimulus

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0227

P

Seeded from EcoCyc (v14.0)

complete

GO:0009378

four-way junction helicase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00016

F

Seeded from EcoCyc (v14.0)

complete

GO:0009378

four-way junction helicase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004605

F

Seeded from EcoCyc (v14.0)

complete

GO:0009378

four-way junction helicase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008823

F

Seeded from EcoCyc (v14.0)

complete

GO:0009378

four-way junction helicase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008824

F

Seeded from EcoCyc (v14.0)

complete

GO:0009432

SOS response

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00016

P

Seeded from EcoCyc (v14.0)

complete

GO:0009432

SOS response

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0742

P

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc (v14.0)

complete

GO:0017111

nucleoside-triphosphatase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of resolvasome

could be indirect

Protein

dnaJ

PMID:15690043

Experiment(s):EBI-880906, EBI-887115

Protein

dnaK

PMID:15690043

Experiment(s):EBI-880906, EBI-887115

Protein

groL

PMID:15690043

Experiment(s):EBI-880906, EBI-887115

Protein

clpB

PMID:15690043

Experiment(s):EBI-887115

Protein

rho

PMID:15690043

Experiment(s):EBI-887115

Protein

rpsB

PMID:15690043

Experiment(s):EBI-887115

Protein

rpsJ

PMID:15690043

Experiment(s):EBI-887115

Protein

tufA

PMID:15690043

Experiment(s):EBI-887115

Protein

groL

PMID:16606699

Experiment(s):EBI-1141073

Protein

adhE

PMID:16606699

Experiment(s):EBI-1141073

Protein

aceE

PMID:16606699

Experiment(s):EBI-1141073

Protein

rpsA

PMID:16606699

Experiment(s):EBI-1141073

Protein

yojN

PMID:16606699

Experiment(s):EBI-1141073

Protein

dnaK

PMID:16606699

Experiment(s):EBI-1141073

Protein

groL

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):17.053160

Protein

rho

PMID:19402753

LCMS(ID Probability):99.6

Protein

groS

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):7.120704

Protein

clpB

PMID:19402753

LCMS(ID Probability):99.6

Protein

dnaJ

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):26.138101

edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MIEADRLISA GTTLPEDVAD RAIRPKLLEE YVGQPQVRSQ MEIFIKAAKL RGDALDHLLI
FGPPGLGKTT LANIVANEMG VNLRTTSGPV LEKAGDLAAM LTNLEPHDVL FIDEIHRLSP
VVEEVLYPAM EDYQLDIMIG EGPAARSIKI DLPPFTLIGA TTRAGSLTSP LRDRFGIVQR
LEFYQVPDLQ YIVSRSARFM GLEMSDDGAL EVARRARGTP RIANRLLRRV RDFAEVKHDG
TISADIAAQA LDMLNVDAEG FDYMDRKLLL AVIDKFFGGP VGLDNLAAAI GEERETIEDV
LEPYLIQQGF LQRTPRGRMA TTRAWNHFGI TPPEMP
Length

336

Mol. Wt

37.175 kDa

pI

4.9 (calculated)

Extinction coefficient

15,930 (calc based on 7 Y, 1 W, and 0 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

256..331

PF05491 Holliday junction DNA helicase ruvB C-terminus

PMID:19920124

Domain

6..239

PF05496 Holliday junction DNA helicase ruvB N-terminus

PMID:19920124

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ruvB taxon=562,83333 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129813

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946371

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006204

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A812

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:RUVB

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10924

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946371

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004476

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0917

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]




Expression

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

[back to top]


See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

1.60E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

E. coli K-12 MG1655

452

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

196

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

218

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

edit table

Notes

Transcription and Transcriptional Regulation

[back to top]


<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

ruvAB

edit table
Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

[back to top]


<protect><gbrowseImage> name=NC_000913:1943360..1943400 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

[back to top]


<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
edit table


Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b1860 (EcoliWiki Page)

NCBI GEO profiles for ruvB

microarray

GenExpDB:b1860 (EcoliWiki Page)

Summary of data for ruvB from multiple microarray studies

edit table


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
edit table

<protect></protect>

Notes

Accessions Related to ruvB Expression

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:RUVB

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0917

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1860

EcoGene

EcoGene:EG10924

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004476

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006204

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]



Evolution

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT3G53230 (score: 1.000; bootstrap: 100%)
  • AT5G03340 (score: 0.921)
  • AT3G09840 (score: 0.907)
  • AT3G01610 (score: 0.255)
  • AT2G03670 (score: 0.231)
  • AT3G56690 (score: 0.217)
  • AT1G03000 (score: 0.145)
  • AT5G08470 (score: 0.135)
  • AT4G29040 (score: 0.099)
  • AT2G20140 (score: 0.099)
  • AT5G19990 (score: 0.098)
  • AT5G20000 (score: 0.097)
  • AT1G45000 (score: 0.097)
  • AT5G58290 (score: 0.097)
  • AT5G43010 (score: 0.096)
  • AT3G05530 (score: 0.093)
  • AT1G09100 (score: 0.090)
  • AT1G80350 (score: 0.090)
  • AT2G34560 (score: 0.081)
  • AT3G19740 (score: 0.075)
  • AT4G04910 (score: 0.073)
  • AT2G45500 (score: 0.071)
  • AT4G27680 (score: 0.070)
  • AT3G27120 (score: 0.070)
  • AT5G53540 (score: 0.070)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0040078 (score: 1.000; bootstrap: 100%)
  • FBgn0040075 (score: 0.383)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17841-PA (score: 1.000; bootstrap: 100%)
  • GA22008-PA (score: 0.383)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000274008 (score: 1.000; bootstrap: 100%)
  • ENSP00000351777 (score: 0.307)
  • ENSP00000342961 (score: 0.235)
  • ENSP00000305494 (score: 0.232)
  • ENSP00000303511 (score: 0.131)
  • ENSP00000248633 (score: 0.129)
  • ENSP00000157812 (score: 0.102)
  • ENSP00000261303 (score: 0.101)
  • ENSP00000216407 (score: 0.091)
  • ENSP00000325770 (score: 0.089)
  • ENSP00000298852 (score: 0.089)
  • ENSP00000225282 (score: 0.069)
  • ENSP00000245121 (score: 0.065)
  • ENSP00000238497 (score: 0.062)
  • ENSP00000260709 (score: 0.062)
  • ENSP00000254950 (score: 0.062)

From Inparanoid:20070104

Oryza gramene

  • Q5VRN1 (score: 1.000; bootstrap: 100%)
  • Q7XE16 (score: 0.268)
  • Q6Z562 (score: 0.261)
  • Q7XU79 (score: 0.145)
  • Q7XTN8 (score: 0.128)
  • Q6AUP8 (score: 0.128)
  • Q6ZJ20 (score: 0.111)
  • Q9FEB6 (score: 0.082)
  • Q9FNU8 (score: 0.079)
  • Q8W3N9 (score: 0.070)
  • Q9FXT8 (score: 0.068)
  • Q8W421 (score: 0.068)
  • Q8W3N8 (score: 0.067)
  • Q84NR0 (score: 0.066)
  • Q8S118 (score: 0.066)
  • Q5QLG1 (score: 0.066)
  • Q5NAF6 (score: 0.066)
  • Q8W422 (score: 0.065)
  • Q7XW77 (score: 0.061)
  • Q6YUV9 (score: 0.058)
  • Q65X08 (score: 0.058)
  • Q8W3P0 (score: 0.057)
  • Q658G8 (score: 0.056)
  • Q5QMP6 (score: 0.053)
  • Q7XXR9 (score: 0.051)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000023584 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000040121 (score: 0.284)
  • ENSRNOP00000004927 (score: 0.232)
  • ENSRNOP00000000183 (score: 0.227)
  • ENSRNOP00000022582 (score: 0.130)
  • ENSRNOP00000011855 (score: 0.105)
  • ENSRNOP00000025819 (score: 0.102)
  • ENSRNOP00000005329 (score: 0.101)
  • ENSRNOP00000009649 (score: 0.091)
  • ENSRNOP00000033763 (score: 0.078)
  • ENSRNOP00000006361 (score: 0.070)
  • ENSRNOP00000046690 (score: 0.063)
  • ENSRNOP00000003715 (score: 0.062)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLL034C (score: 1.000; bootstrap: 100%)
  • YDL126C (score: 0.231)
  • YLR397C (score: 0.213)
  • YNL329C (score: 0.103)
  • YGR270W (score: 0.090)
  • YDR394W (score: 0.081)
  • YGR028W (score: 0.066)
  • YPR173C (score: 0.066)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC15658 (score: 1.000; bootstrap: 100%)
  • SPBC56F27c (score: 0.286)
  • SPBC16E90c (score: 0.252)
  • SPAC17A51 (score: 0.155)
  • SPCC5533 (score: 0.113)
  • SPBP22H75c (score: 0.105)
  • SPBC23G72c (score: 0.101)
  • SPBC47c (score: 0.091)
  • SPAC3A112c (score: 0.091)
  • SPCC5760c (score: 0.086)
  • SPAC2G116 (score: 0.082)
  • SPCC24B100c (score: 0.058)

From Inparanoid:20070104

Shigella flexneri

RUVB

From SHIGELLACYC

E. coli O157

RUVB

From ECOO157CYC

edit table


Do-It-Yourself Web Tools

<protect></protect>

Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:46785

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Panther (EcoliWiki Page)

PTHR13779:SF2

Pfam (EcoliWiki Page)

PF05491 Holliday junction DNA helicase ruvB C-terminus

Pfam (EcoliWiki Page)

PF05496 Holliday junction DNA helicase ruvB N-terminus

EcoCyc

EcoCyc:RUVB

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10924

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004476

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0917

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006204

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ruvB:On_One_Page&oldid=220260"