rpsE:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

rpsE

Gene Synonym(s)

ECK3290, b3303, JW3265, eps, spc, spcA[1], spcA

Product Desc.

30S ribosomal subunit protein S5[2][3];

Component of 30S ribosomal subunit[2][3]; ribosome[2][3]

30S ribosomal subunit protein S5[4]

Product Synonyms(s)

30S ribosomal subunit protein S5[1], B3303[2][1], Spc[2][1], Eps[2][1], SpcA[2][1], RpsE[2][1] , ECK3290, eps, JW3265, spc, spcA, b3303

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ[2], rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-prlA-rpmJ

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

rpsE

Mnemonic

Ribosomal protein, small

Synonyms

ECK3290, b3303, JW3265, eps, spc, spcA[1], spcA

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

74.2 minutes, 74.2 minutes 

MG1655: 3443251..3442748
<gbrowseImage> name=NC_000913:3442748..3443251 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3373134..3372631
<gbrowseImage> name=NC_012967:3372631..3373134 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3329905..3330408
<gbrowseImage> name=NC_012759:3329905..3330408 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4195187..4195690
<gbrowseImage> name=NC_007779:4195187..4195690 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3540996..3540493
<gbrowseImage> name=NC_010473:3540493..3540996 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

3442751

Edman degradation

PMID:363452


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

rpsEV21E

V21E

(in strain: SPCR7; spectinomycin resistant. Not a ram mutation)

Strain variation; seeded from UniProt:P0A7W1

rpsES22P

S22P

(in strain: SPCR13 and SPCR15; spectinomycin resistant. Not a ram mutation)

Strain variation; seeded from UniProt:P0A7W1

rpsEG104R

G104R

(in strain: N-660; suppresses S12 streptomycin dependence)

Strain variation; seeded from UniProt:P0A7W1

rpsEE151S

E151S

(in strain: B)

Strain variation; seeded from UniProt:P0A7W1

rpsER20L

R20L

(in strain: SPCR9; spectinomycin resistant. Not a ram mutation)

Strain variation; seeded from UniProt:P0A7W1

rpsEEEILGK162G

EEILGK162G

(in strain: 0-1; suppresses an alanyl-tRNA synthetase mutation. Blocks ribosome assembly below 25 degrees Celsius)

Strain variation; seeded from UniProt:P0A7W1

rpsER112L

R112L

(in strain: N-421 and D-1023; suppresses S12 streptomycin-dependence)

Strain variation; seeded from UniProt:P0A7W1

rpsER112G

R112G

(in strain: NEA-314; neamycin resistant)

Strain variation; seeded from UniProt:P0A7W1

rpsER112S

R112S

(in strain: NEA-319; neamycin resistant)

Strain variation; seeded from UniProt:P0A7W1

rpsERVSKTVKGGR20AVSKTVKGGA

RVSKTVKGGR20AVSKTVKGGA

No effect on mRNA unwinding ability of the ribosome

seeded from UniProt:P0A7W1

rpsE2300(SpcR)

spectinomycin resistant

CGSC:5961

rpsE2113(SpcR)

spectinomycin resistant

CGSC:5242

rpsE2018

CGSC:6190

rpsE2339(SpcR)

spectinomycin resistant

CGSC:6776

rpsE2015(SpcR)

spectinomycin resistant

CGSC:6986

rpsE2111(SpcR)

spectinomycin resistant

CGSC:8681

rpsE2128(SpcR)

spectinomycin resistant

CGSC:9225

rpsE2130(SpcR)

spectinomycin resistant

CGSC:9474

rpsE116(SpcR)

spectinomycin resistant

CGSC:10056

rpsE2115(SpcR)

spectinomycin resistant

CGSC:11035

rpsE2112(SpcR)

spectinomycin resistant

CGSC:11462

rpsE2123(SpcR)

spectinomycin resistant

CGSC:11661

rpsE2126(SpcR)

spectinomycin resistant

CGSC:12151

rpsE2296(SpcR)

spectinomycin resistant

PMID:4280012

CGSC:12166

rpsE2127(SpcR)

spectinomycin resistant

CGSC:12962

rpsE2117(SpcR)

spectinomycin resistant

CGSC:14058

rpsE11(SpcR)

spectinomycin resistant

CGSC:16185

rpsE0(SpcR)

spectinomycin resistant

CGSC:19327

rpsE2154

CGSC:72021

rpsE2141

CGSC:74739

rpsE-nea314 rpsL-nea314

Arg to Gly in Peptide T2 [5] Pro to Leu in peptide T15 [5]

Resistant to

resistance to neamine

PMID:765735

See Figure 7 for analysis of the Double mutation

spcA strA

Resistant to

Resistance to Neamine

PMID:58966

Strain: KMBL-146

Table 4 results are traceable references here [6]

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Notes

Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3265

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGCTCACATCGAAAAACAAGC

Primer 2:CCTTTCCCCAGAATTTCTTCAAC

E1H9

Kohara Phage

Genobase

PMID:3038334

smg-3082::Tn10

Linked marker

CAG12071 = CGSC7444[7]

est. P1 cotransduction: 61% [8]
Synonyms:zhb-3082::Tn10, zhd-3082::Tn10

zhf-3084::Tn10

Linked marker

CAG18456 = CGSC7576[7]

est. P1 cotransduction: 4% [8]
Synonyms:zhe-3084::Tn10nnnCAG18456 also carries cysG0 (CGSC).

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10904

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10904

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000895

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947795

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0897

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010823

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RpsE

Synonyms

30S ribosomal subunit protein S5[1], B3303[2][1], Spc[2][1], Eps[2][1], SpcA[2][1], RpsE[2][1] , ECK3290, eps, JW3265, spc, spcA, b3303

Product description

30S ribosomal subunit protein S5[2][3];

Component of 30S ribosomal subunit[2][3]; ribosome[2][3]

30S ribosomal subunit protein S5[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013810

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014720

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0694

F

Seeded from EcoCyc (v14.0)

complete

GO:0022627

cytosolic small ribosomal subunit

C

Missing: evidence, reference

GO:0003735

structural constituent of ribosome

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000851

F

Seeded from EcoCyc (v14.0)

complete

GO:0003735

structural constituent of ribosome

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005324

F

Seeded from EcoCyc (v14.0)

complete

GO:0003735

structural constituent of ribosome

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005712

F

Seeded from EcoCyc (v14.0)

complete

GO:0003735

structural constituent of ribosome

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013810

F

Seeded from EcoCyc (v14.0)

complete

GO:0005622

intracellular

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000851

C

Seeded from EcoCyc (v14.0)

complete

GO:0005622

intracellular

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005324

C

Seeded from EcoCyc (v14.0)

complete

GO:0005622

intracellular

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013810

C

Seeded from EcoCyc (v14.0)

complete

GO:0005622

intracellular

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR014720

C

Seeded from EcoCyc (v14.0)

complete

GO:0005840

ribosome

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000851

C

Seeded from EcoCyc (v14.0)

complete

GO:0005840

ribosome

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005324

C

Seeded from EcoCyc (v14.0)

complete

GO:0005840

ribosome

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013810

C

Seeded from EcoCyc (v14.0)

complete

GO:0005840

ribosome

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0689

C

Seeded from EcoCyc (v14.0)

complete

GO:0006412

translation

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01307

P

Seeded from EcoCyc (v14.0)

complete

GO:0006412

translation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000851

P

Seeded from EcoCyc (v14.0)

complete

GO:0006412

translation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005324

P

Seeded from EcoCyc (v14.0)

complete

GO:0006412

translation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005712

P

Seeded from EcoCyc (v14.0)

complete

GO:0006412

translation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013810

P

Seeded from EcoCyc (v14.0)

complete

GO:0015935

small ribosomal subunit

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005712

C

Seeded from EcoCyc (v14.0)

complete

GO:0019843

rRNA binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01307

F

Seeded from EcoCyc (v14.0)

complete

GO:0019843

rRNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0699

F

Seeded from EcoCyc (v14.0)

complete

GO:0030529

ribonucleoprotein complex

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0687

C

Seeded from EcoCyc (v14.0)

complete

GO:0046677

response to antibiotic

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0046

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of 30S ribosomal subunit

could be indirect

Protein

rpsA

PMID:15690043

Experiment(s):EBI-879726, EBI-884272

Protein

rpsB

PMID:15690043

Experiment(s):EBI-879726, EBI-884272

Protein

rpsC

PMID:15690043

Experiment(s):EBI-879726, EBI-884272

Protein

rpsD

PMID:15690043

Experiment(s):EBI-879726, EBI-884272

Protein

rpsF

PMID:15690043

Experiment(s):EBI-879726, EBI-884272

Protein

rpsG

PMID:15690043

Experiment(s):EBI-879726, EBI-884272

Protein

rpsI

PMID:15690043

Experiment(s):EBI-879726

Protein

rpsM

PMID:15690043

Experiment(s):EBI-879726, EBI-884272

Protein

tufA

PMID:15690043

Experiment(s):EBI-879726, EBI-894882

Protein

rpsJ

PMID:15690043

Experiment(s):EBI-879726, EBI-884272

Protein

rplC

PMID:16606699

Experiment(s):EBI-1145472

Protein

rpsI

PMID:16606699

Experiment(s):EBI-1145472

Protein

rplB

PMID:16606699

Experiment(s):EBI-1145472, EBI-1145550

Protein

rplA

PMID:16606699

Experiment(s):EBI-1145472

Protein

ydfK

PMID:16606699

Experiment(s):EBI-1145472

Protein

rplD

PMID:16606699

Experiment(s):EBI-1145472

Protein

rimK

PMID:16606699

Experiment(s):EBI-1145472

Protein

rplQ

PMID:16606699

Experiment(s):EBI-1145472

Protein

yohF

PMID:16606699

Experiment(s):EBI-1145472

Protein

ynaE

PMID:16606699

Experiment(s):EBI-1145472

Protein

nfnB

PMID:16606699

Experiment(s):EBI-1145472

Protein

nrdR

PMID:16606699

Experiment(s):EBI-1145472

Protein

gyrA

PMID:15690043

Experiment(s):EBI-884272

Protein

gyrB

PMID:15690043

Experiment(s):EBI-884272

Protein

rplC

PMID:15690043

Experiment(s):EBI-884272

Protein

rplU

PMID:15690043

Experiment(s):EBI-884272

Protein

rpsH

PMID:15690043

Experiment(s):EBI-884272

Protein

rpsL

PMID:15690043

Experiment(s):EBI-884272

Protein

rpsP

PMID:15690043

Experiment(s):EBI-884272

Protein

rpsS

PMID:15690043

Experiment(s):EBI-884272

Protein

rpsT

PMID:15690043

Experiment(s):EBI-884272

Protein

Subunits of ribosome

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MAHIEKQAGE LQEKLIAVNR VSKTVKGGRI FSFTALTVVG DGNGRVGFGY GKAREVPAAI
QKAMEKARRN MINVALNNGT LQHPVKGVHT GSRVFMQPAS EGTGIIAGGA MRAVLEVAGV
HNVLAKAYGS TNPINVVRAT IDGLENMNSP EMVAAKRGKS VEEILGK
Length

167

Mol. Wt

17.602 kDa

pI

10.5 (calculated)

Extinction coefficient

2,980 (calc based on 2 Y, 0 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0A7W1

Domain

10..76

PF00333 Ribosomal protein S5, N-terminal domain

PMID:19920124

Domain

85..158

PF03719 Ribosomal protein S5, C-terminal domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rpsE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131182

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947795

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010823

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A7W1

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10904

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10904

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947795

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000895

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0897

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

4.53E+04

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

1047.083+/-6.514

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.16754+/-0.03214

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

2.528827038

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

114899

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

16467

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

73639

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ

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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3443231..3443271 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3303 (EcoliWiki Page)

NCBI GEO profiles for rpsE

microarray

GenExpDB:b3303 (EcoliWiki Page)

Summary of data for rpsE from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to rpsE Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10904

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0897

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3303

EcoGene

EcoGene:EG10904

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000895

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010823

Escherichia coli str. K-12 substr. MG1655

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Evolution

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Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000009664 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G33800 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000010843 (score: 1.000; bootstrap: 51%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00037267 (score: 1.000; bootstrap: 100%)
  • WBGene00041867 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00008452 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000010468 (score: 1.000; bootstrap: 55%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-2454 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3401 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0215391 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0044510 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19229-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000272418 (score: 1.000; bootstrap: 57%)
  • ENSP00000332440 (score: 0.803)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000021341 (score: 1.000; bootstrap: 63%)

From Inparanoid:20070104

Mus musculus

  • MGI:3643279 (score: 1.000; bootstrap: 57%)
  • MGI:3647575 (score: 1.000; bootstrap: 56%)
  • MGI:3645604 (score: 0.983)
  • MGI:105110 (score: 0.983)
  • MGI:3645003 (score: 0.963)
  • MGI:3648968 (score: 0.955)
  • MGI:3647574 (score: 0.946)
  • MGI:3644876 (score: 0.933)
  • MGI:3647516 (score: 0.885)
  • MGI:3643826 (score: 0.838)
  • MGI:3645904 (score: 0.831)
  • MGI:3646785 (score: 0.551)
  • MGI:3648610 (score: 0.270)
  • MGI:3647821 (score: 0.231)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000020929 (score: 1.000; bootstrap: 54%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YBR251W (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC4G97c (score: 1.000; bootstrap: 72%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000129380 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00033426001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPSE

From SHIGELLACYC

E. coli O157

RPSE

From ECOO157CYC

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Notes

Families

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Database Accession Notes

Panther (EcoliWiki Page)

PTHR13718:SF60

Superfamily (EcoliWiki Page)

SUPERFAMILY:54211

Superfamily (EcoliWiki Page)

SUPERFAMILY:54768

Pfam (EcoliWiki Page)

PF00333 Ribosomal protein S5, N-terminal domain

Pfam (EcoliWiki Page)

PF03719 Ribosomal protein S5, C-terminal domain

EcoCyc

EcoCyc:EG10904

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10904

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000895

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0897

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010823

Escherichia coli str. K-12 substr. MG1655

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Links

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References

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  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Yaguchi, M et al. (1975) Cooperative control of translational fidelity by ribosomal proteins in Escherichia coli. II. Localization of amino acid replacements in proteins S5 and S12 altered in double mutants resistant to neamine. Mol. Gen. Genet. 142 35-43 PubMed
  6. ↑ De Wilde, M et al. (1975) Cooperative control of translation fidelity by ribosomal proteins in Escherichia coli. I. Properties of ribosomal mutants whose resistance to neamine is the cumulative effect of two distinct mutations. Mol. Gen. Genet. 142 19-33 PubMed
  7. ↑ 7.0 7.1 CGSC: The Coli Genetics Stock Center
  8. ↑ 8.0 8.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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