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On One Page

Quickview |

Gene |

Product(s) |

Expression|

Evolution |

References |

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Standard Name	rpsC
Gene Synonym(s)	ECK3301, b3314, JW3276^[1], JW3276
Product Desc.	30S ribosomal subunit protein S3^[2]^[3]; Component of 30S ribosomal subunit^[2]^[3]; ribosome^[2]^[3] 30S ribosomal subunit protein S3^[4]
Product Synonyms(s)	30S ribosomal subunit protein S3^[1], B3314^[2]^[1], RpsC^[2]^[1] , ECK3301, JW3276, b3314
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ^[2]
Regulation/Activity
Quick Links
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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	rpsC
Mnemonic	Ribosomal protein, small
Synonyms	ECK3301, b3314, JW3276^[1], JW3276
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	74.3 minutes, 74.3 minutes	MG1655: 3447905..3447204 <gbrowseImage> name=NC_000913:3447204..3447905 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 3377788..3377087 <gbrowseImage> name=NC_012967:3377087..3377788 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 3334361..3335062 <gbrowseImage> name=NC_012759:3334361..3335062 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 4190533..4191234 <gbrowseImage> name=NC_007779:4190533..4191234 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
Coding Start (SO:0000323)	MG1655	3447207	Edman degradation	PMID:387449
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Type	Phenotype: Description	Reference	Comments
rpsCRRAMK131AAAMA		RRAMK131AAAMA		Decreases mRNA unwinding ability of the ribosome		seeded from UniProt:P0A7V3
rpsC in HN13	spr^r received by P1 transduction		Sensitivity to	there was a decrease in cold sensitivity but a continuation in spc resistance.	PMID:26327	See Figure 1. This is ultimately a derivative of AB1157 1157
Suc^d-Spc^r in YM50	Ribosomal Alteration		Protein Deletion	Protein I-19 was deleted	PMID:128555	See Table 2. Also absent in strains YM22, YM26, YM37, YM54, YM69, YM84, YM85, YM93, YM101
Suc^d-Spc^r in YM101	Ribosomal Alteration		Protein Deletion	Protein I-13 was deleted	PMID:128555	See Table 2 and Figure 1
I-19 in W4626Phe^-	100 ug of chloramphenicol was added 10 minutes prior to the addition of spectinomycin		Rate of protien synthesis	the addition of chloramphenicol caused a delay in the disappearance of I-19 as seen in Figure 7 A to D.	PMID:137231	Cell growth was greatly inhibited as seen in Figure 6 curve II but not completely stopped.
Suc^d-Spc^r in YM22	Ribosomal Alteration		Protein Deletion	Protein I-24 was deleted	PMID:128555	See Table 2. Also absent in strains YM50 and YM93
I-19 in W4626Phe^-	300 ug of chloramiphenicol was added before the addition of spectinomycin		Rate of protien synthesis	the addition of chloramphenicol stopped the disappearance of I-19, see figure 7E	PMID:137231	Cell growth was greatly inhibited as seen in Figure 6 curve III
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW3276	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCGGTCAGAAAGTACATCCTAA Primer 2:CCTTTACGaCCTTTACGCTGCTGCTTTTTA
E1H9	Kohara Phage	Genobase	PMID:3038334
smg-3082::Tn10	Linked marker	CAG12071 = CGSC7444^[5]	est. P1 cotransduction: 51% ^[6] Synonyms:zhb-3082::Tn10, zhd-3082::Tn10
zhf-3084::Tn10	Linked marker	CAG18456 = CGSC7576^[5]	est. P1 cotransduction: 6% ^[6] Synonyms:zhe-3084::Tn10nnnCAG18456 also carries cysG0 (CGSC).
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10902	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10902	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000893	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:947814	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0895	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0010848	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	RpsC
Synonyms	30S ribosomal subunit protein S3^[1], B3314^[2]^[1], RpsC^[2]^[1] , ECK3301, JW3276, b3314
Product description	30S ribosomal subunit protein S3^[2]^[3]; Component of 30S ribosomal subunit^[2]^[3]; ribosome^[2]^[3] 30S ribosomal subunit protein S3^[4]
EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0003723	RNA binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR004044	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003723	RNA binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR004087	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003723	RNA binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR009019	F	Seeded from EcoCyc (v14.0)	complete
	GO:0022627	cytosolic small ribosomal subunit	PMID:4587209	IDA: Inferred from Direct Assay		C	Data in Figure 1.	complete
	GO:0003723	RNA binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR018280	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003723	RNA binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0694	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003735	structural constituent of ribosome	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001351	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003735	structural constituent of ribosome	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR005704	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003735	structural constituent of ribosome	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR008282	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003735	structural constituent of ribosome	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR018280	F	Seeded from EcoCyc (v14.0)	complete
	GO:0006412	translation	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01309	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006412	translation	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001351	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006412	translation	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR005704	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006412	translation	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR008282	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006412	translation	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR018280	P	Seeded from EcoCyc (v14.0)	complete
	GO:0019843	rRNA binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0699	F	Seeded from EcoCyc (v14.0)	complete
	GO:0019843	rRNA binding	PMID:2459390	IDA: Inferred from Direct Assay		F	Seeded from EcoCyc (v14.0)	complete
	GO:0070181	SSU rRNA binding	PMID:2459390	IDA: Inferred from Direct Assay		F	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of 30S ribosomal subunit	could be indirect
Protein	rplQ		PMID:16606699	Experiment(s):EBI-1145531
Protein	ynaE		PMID:16606699	Experiment(s):EBI-1145531
Protein	rplB		PMID:16606699	Experiment(s):EBI-1145531
Protein	Subunits of ribosome	could be indirect
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
cytoplasm			From EcoCyc^[3]
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MGQKVHPNGI RLGIVKPWNS TWFANTKEFA DNLDSDFKVR QYLTKELAKA SVSRIVIERP AKSIRVTIHT ARPGIVIGKK GEDVEKLRKV VADIAGVPAQ INIAEVRKPE LDAKLVADSI TSQLERRVMF RRAMKRAVQN AMRLGAKGIK VEVSGRLGGA EIARTEWYRE GRVPLHTLRA DIDYNTSEAH TTYGVIGVKV WIFKGEILGG MAAVEQPEKP AAQPKKQQRK GRK
Length	233
Mol. Wt	25.983 kDa
pI	10.7 (calculated)
Extinction coefficient	27,960 (calc based on 4 Y, 4 W, and 0 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Initiator Methionine	1	Removed	UniProt:P0A7V3
Domain	119..202	PF00189 Ribosomal protein S3, C-terminal domain		PMID:19920124
Domain	1..62	PF00417 Ribosomal protein S3, N-terminal domain		PMID:19920124
Domain	63..117	PF07650 KH domain		PMID:19920124
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rpsC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16131193	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:947814	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0010848	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P0A7V3	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10902	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10902	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:947814	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000893	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0895	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Reference(s)
Protein	E. coli K-12 MC4100	8.21E+04	molecules/cell	Medium: median data from rich and minimal media Temperature (°C): 37 Doubling time (min): Growth Rate(min): Growth phase: other:	emPAI	PMID:18304323
Protein	E. coli K-12 MG1655	114735	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID: 24766808
Protein	E. coli K-12 MG1655	19343	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID: 24766808
Protein	E. coli K-12 MG1655	73304	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ
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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3447885..3447925 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b3314 (EcoliWiki Page)	NCBI GEO profiles for rpsC
microarray	GenExpDB:b3314 (EcoliWiki Page)	Summary of data for rpsC from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to rpsC Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10902	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0895	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b3314
EcoGene	EcoGene:EG10902	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000893	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0010848	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000020844 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Canis familiaris	ENSCAFP00000008052 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Danio rerio	ZDB-GENE-030131-8494 (score: 1.000; bootstrap: 100%) ZDB-CDNA-040425-1058 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Gallus gallus	ENSGALP00000027953 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Homo sapiens	ENSP00000278572 (score: 1.000; bootstrap: 100%) ENSP00000343587 (score: 0.577)	From Inparanoid:20070104
Macaca mulatta	ENSMMUP00000011816 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Monodelphis domestica	ENSMODP00000008611 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Mus musculus	MGI:1350917 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Oryza gramene	Q6ENS5 (score: 1.000; bootstrap: 99%) P06586 (score: 1.000; bootstrap: 99%) Q6L3G0 (score: 1.000; bootstrap: 99%) Q6QY47 (score: 0.934) Q6QXY4 (score: 0.934) P12146 (score: 0.934) Q6END5 (score: 0.934) Q6Z510 (score: 0.930) Q95H49 (score: 0.904)	From Inparanoid:20070104
Rattus norvegicus	ENSRNOP00000023935 (score: 1.000; bootstrap: 100%) ENSRNOP00000009988 (score: 0.949) ENSRNOP00000038496 (score: 0.529)	From Inparanoid:20070104
Saccharomyces cerevisiae	YNL178W (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Takifugu rubripes	NEWSINFRUP00000162445 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Tetraodon nigroviridis	GSTENP00011422001 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Xenopus tropicalis	ENSXETP00000021885 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Shigella flexneri	RPSC	From SHIGELLACYC
E. coli O157	RPSC	From ECOO157CYC
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Panther (EcoliWiki Page)	PTHR11760:SF10
Superfamily (EcoliWiki Page)	SUPERFAMILY:54814
Superfamily (EcoliWiki Page)	SUPERFAMILY:54821
Pfam (EcoliWiki Page)	PF00189 Ribosomal protein S3, C-terminal domain
Pfam (EcoliWiki Page)	PF00417 Ribosomal protein S3, N-terminal domain
Pfam (EcoliWiki Page)	PF07650 KH domain
EcoCyc	EcoCyc:EG10902	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10902	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000893	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0895	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0010848	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.00 ^2.01 ^2.02 ^2.03 ^2.04 ^2.05 ^2.06 ^2.07 ^2.08 ^2.09 ^2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 ^3.4 ^3.5 ^3.6 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

rpsC:On One Page

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Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to rpsC Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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