rplE:On One Page
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Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
Quickview | | Gene | | Product(s) | | Expression| | Evolution | | References | |
Quickview
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Standard Name |
rplE |
---|---|
Gene Synonym(s) |
ECK3295, b3308, JW3270[1], JW3270 |
Product Desc. |
50S ribosomal subunit protein L5[2][3]; Component of 50S ribosomal subunit[3]; ribosome[2][3] 50S ribosomal subunit protein L5; 5S rRNA-binding[4] |
Product Synonyms(s) |
50S ribosomal subunit protein L5[1], B3308[2][1], RplE[2][1] , ECK3295, JW3270, b3308 |
Function from GO |
<GO_nr /> |
Knock-Out Phenotype | |
Regulation/Expression |
transcription unit(s): rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ[2], rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-prlA-rpmJ |
Regulation/Activity | |
Quick Links | |
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Notes
rplE is an essential gene as judged by the inability to recombineer haploid deletions (Baba, 2006; Korepanov, 2006).[4]
Gene
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
Standard name |
rplE |
---|---|
Mnemonic |
Ribosomal protein, large |
Synonyms |
ECK3295, b3308, JW3270[1], JW3270 |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
---|---|---|---|---|
MG1655 |
74.25 minutes, 74.25 minutes |
MG1655: 3445460..3444921 |
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NC_012967: 3375343..3374804 |
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NC_012759: 3332078..3332617 |
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W3110 |
|
W3110: 4192978..4193517 |
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DH10B: 3543205..3542666 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
---|---|---|---|---|---|
Coding Start (SO:0000323) |
3444924 |
Edman degradation |
PMID:791672 |
| |
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
---|---|---|---|---|---|---|---|
rplE |
Resistant to |
Thiopeptin-resistant mutants. |
PMID:4365100 PMID:1098662 |
Obtained from E. coli Q 13 by treatment with N-methyl-N'-nitro-N-nitrosoguanidine. |
Figure 1 of PMID:4365100 | ||
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Notes
Genetic Interactions
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Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
---|---|---|---|---|---|---|
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
Resource | Resource Type | Source | Notes/Reference |
---|---|---|---|
JW3270 |
Plasmid clone |
PMID:16769691 Status:Clone OK Primer 1:GCCGCGAAACTGCATGATTACTA Primer 2:CCtTTGCGGAACGGGAAGTCAAA | |
Kohara Phage |
PMID:3038334 | ||
Linked marker |
est. P1 cotransduction: 56% [6] | ||
Linked marker |
est. P1 cotransduction: 5% [6] | ||
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
EcoCyc:EG10868 |
Escherichia coli str. K-12 substr. MG1655 | |
EcoGene:EG10868 |
Escherichia coli str. K-12 substr. MG1655 | |
RegulonDB:ECK120000859 |
Escherichia coli str. K-12 substr. MG1655 | |
Escherichia coli str. K-12 substr. MG1655 | ||
EchoBASE:EB0861 |
Escherichia coli str. K-12 substr. MG1655 | |
ASAP:ABE-0010833 |
Escherichia coli str. K-12 substr. MG1655 | |
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Notes
Links
Name | URL | Comments |
---|---|---|
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Product(s)
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Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Standard name |
RplE |
---|---|
Synonyms |
50S ribosomal subunit protein L5[1], B3308[2][1], RplE[2][1] , ECK3295, JW3270, b3308 |
Product description |
50S ribosomal subunit protein L5[2][3]; Component of 50S ribosomal subunit[3]; ribosome[2][3] 50S ribosomal subunit protein L5; 5S rRNA-binding[4] |
EC number (for enzymes) |
|
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
---|---|---|---|---|---|---|---|---|
GO:0000049 |
tRNA binding |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0820 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0003723 |
RNA binding |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0694 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0003735 |
structural constituent of ribosome |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR002132 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0003735 |
structural constituent of ribosome |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR020929 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0003735 |
structural constituent of ribosome |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR020930 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0005840 |
ribosome |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR002132 |
C |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0005840 |
ribosome |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR020929 |
C |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0005840 |
ribosome |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR020930 |
C |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0005840 |
ribosome |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0689 |
C |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0006412 |
translation |
GOA:hamap |
IEA: Inferred from Electronic Annotation |
HAMAP:MF_01333 |
P |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0006412 |
translation |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR002132 |
P |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0006412 |
translation |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR020929 |
P |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0006412 |
translation |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
InterPro:IPR020930 |
P |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0019843 |
rRNA binding |
GOA:hamap |
IEA: Inferred from Electronic Annotation |
HAMAP:MF_01333 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0019843 |
rRNA binding |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0699 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0030529 |
ribonucleoprotein complex |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0687 |
C |
Seeded from EcoCyc (v14.0) |
complete | |
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Partner Type | Partner | Notes | References | Evidence |
---|---|---|---|---|
Protein |
Subunits of 50S ribosomal subunit |
could be indirect |
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Protein |
Subunits of ribosome |
could be indirect |
| |
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Compartment | Description | Evidence | Reference/Source | Notes |
---|---|---|---|---|
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Name | |
---|---|
Sequence |
MAKLHDYYKD EVVKKLMTEF NYNSVMQVPR VEKITLNMGV GEAIADKKLL DNAAADLAAI SGQKPLITKA RKSVAGFKIR QGYPIGCKVT LRGERMWEFF ERLITIAVPR IRDFRGLSAK SFDGRGNYSM GVREQIIFPE IDYDKVDRVR GLDITITTTA KSDEEGRALL AAFDFPFRK |
Length |
179 |
Mol. Wt |
20.302 kDa |
pI |
9.9 (calculated) |
Extinction coefficient |
14,440 - 14,565 (calc based on 6 Y, 1 W, and 1 C residues) |
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Domains/Motifs/Modification Sites
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
Structure
| </protect>
Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Resource type | Source | Notes/Reference |
---|---|---|
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
ASAP:ABE-0010833 |
Escherichia coli str. K-12 substr. MG1655 | |
Escherichia coli str. K-12 substr. MG1655 | ||
EcoCyc:EG10868 |
Escherichia coli str. K-12 substr. MG1655 | |
EcoGene:EG10868 |
Escherichia coli str. K-12 substr. MG1655 | |
Escherichia coli str. K-12 substr. MG1655 | ||
RegulonDB:ECK120000859 |
Escherichia coli str. K-12 substr. MG1655 | |
EchoBASE:EB0861 |
Escherichia coli str. K-12 substr. MG1655 | |
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Notes
Links
Name | URL | Comments |
---|---|---|
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Expression
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Overview
This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.
Cellular Levels
Molecule | Organism or Strain | Value | Units | Experimental Conditions | Assay used | Notes | Reference(s) |
---|---|---|---|---|---|---|---|
Protein |
E. coli K-12 MC4100 |
3.32E+04 |
molecules/cell |
|
emPAI |
PMID:18304323 | |
Protein |
E. coli K-12 MG1655 |
111791 |
molecules/cell/generation |
|
Ribosome Profiling |
PMID: 24766808 | |
Protein |
E. coli K-12 MG1655 |
19113 |
molecules/cell/generation |
|
Ribosome Profiling |
PMID: 24766808 | |
Protein |
E. coli K-12 MG1655 |
63916 |
molecules/cell/generation |
|
Ribosome Profiling |
PMID: 24766808 | |
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Notes
Transcription and Transcriptional Regulation
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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.
|
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Notes
This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.
Translation and Regulation of Translation
<protect><gbrowseImage>
name=NC_000913:3445440..3445480
source=MG1655
flip=1
type=Gene+DNA_+Protein
preset=Nterminus
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This picture shows the sequence around the N-terminus.
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Notes
This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.
Turnover and Regulation of Turnover
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Notes
This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.
Experimental
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Mutations Affecting Expression
See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.
Allele Name | Mutation | Phenotype | Reference |
---|---|---|---|
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Expression Studies
See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.
Type | Reference | Notes |
---|---|---|
microarray |
NCBI GEO profiles for rplE | |
microarray |
Summary of data for rplE from multiple microarray studies | |
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Expression Resources
See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.
Resource Name | Resource Type | Description | Source | Notes |
---|---|---|---|---|
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Notes
Accessions Related to rplE Expression
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
EcoCyc:EG10868 |
Escherichia coli str. K-12 substr. MG1655 | |
EchoBASE:EB0861 |
Escherichia coli str. K-12 substr. MG1655 | |
EcoGene:EG10868 |
Escherichia coli str. K-12 substr. MG1655 | |
RegulonDB:ECK120000859 |
Escherichia coli str. K-12 substr. MG1655 | |
ASAP:ABE-0010833 |
Escherichia coli str. K-12 substr. MG1655 | |
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Notes
Links
Name | URL | Comments |
---|---|---|
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Evolution
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Homologs in Other Organisms
See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.
Organism | Homologs (Statistics) | Comments |
---|---|---|
Anopheles gambiae |
|
From Inparanoid:20070104 |
Apis mellifera |
|
From Inparanoid:20070104 |
Arabidopsis thaliana |
|
From Inparanoid:20070104 |
Bos taurus |
|
From Inparanoid:20070104 |
Caenorhabditis briggsae |
|
From Inparanoid:20070104 |
Caenorhabditis elegans |
|
From Inparanoid:20070104 |
Canis familiaris |
|
From Inparanoid:20070104 |
Ciona intestinalis |
|
From Inparanoid:20070104 |
Danio rerio |
|
From Inparanoid:20070104 |
Dictyostelium discoideum |
|
From Inparanoid:20070104 |
Drosophila melanogaster |
|
From Inparanoid:20070104 |
Gallus gallus |
|
From Inparanoid:20070104 |
Homo sapiens |
|
From Inparanoid:20070104 |
Monodelphis domestica |
|
From Inparanoid:20070104 |
Mus musculus |
|
From Inparanoid:20070104 |
Oryza gramene |
|
From Inparanoid:20070104 |
Rattus norvegicus |
|
From Inparanoid:20070104 |
Saccharomyces cerevisiae |
|
From Inparanoid:20070104 |
Schizosaccharomyces pombe |
|
From Inparanoid:20070104 |
Takifugu rubripes |
|
From Inparanoid:20070104 |
Tetraodon nigroviridis |
|
From Inparanoid:20070104 |
Xenopus tropicalis |
|
From Inparanoid:20070104 |
Shigella flexneri |
RPLE |
From SHIGELLACYC |
E. coli O157 |
RPLE |
From ECOO157CYC |
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Do-It-Yourself Web Tools
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Notes
Families
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
EcoCyc:EG10868 |
Escherichia coli str. K-12 substr. MG1655 | |
EcoGene:EG10868 |
Escherichia coli str. K-12 substr. MG1655 | |
RegulonDB:ECK120000859 |
Escherichia coli str. K-12 substr. MG1655 | |
EchoBASE:EB0861 |
Escherichia coli str. K-12 substr. MG1655 | |
ASAP:ABE-0010833 |
Escherichia coli str. K-12 substr. MG1655 | |
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Notes
Links
Name | URL | Comments |
---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
- ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
Categories
- Genes with homologs in Anopheles gambiae
- Genes with homologs in Apis mellifera
- Genes with homologs in Arabidopsis thaliana
- Genes with homologs in Bos taurus
- Genes with homologs in Caenorhabditis briggsae
- Genes with homologs in Caenorhabditis elegans
- Genes with homologs in Canis familiaris
- Genes with homologs in Ciona intestinalis
- Genes with homologs in Danio rerio
- Genes with homologs in Dictyostelium discoideum
- Genes with homologs in Drosophila melanogaster
- Genes with homologs in Gallus gallus
- Genes with homologs in Homo sapiens
- Genes with homologs in Monodelphis domestica
- Genes with homologs in Mus musculus
- Genes with homologs in Oryza gramene
- Genes with homologs in Rattus norvegicus
- Genes with homologs in Saccharomyces cerevisiae
- Genes with homologs in Schizosaccharomyces pombe
- Genes with homologs in Takifugu rubripes
- Genes with homologs in Tetraodon nigroviridis
- Genes with homologs in Xenopus tropicalis
- Genes with homologs in Shigella flexneri
- Genes with homologs in E. coli O157