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On One Page

Quickview |

Gene |

Product(s) |

Expression|

Evolution |

References |

Quickview

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Standard Name	purC
Gene Synonym(s)	ECK2472, b2476, JW2461, adeg, ade(g)^[1], ade
Product Desc.	PurC^[2]^[3]; Component of phosphoribosylaminoimidazole-succinocarboxamide synthase^[2]^[3] Phosphoribosyl-aminoimidazole-succinocarboxamide synthase; purine synthesis^[4]
Product Synonyms(s)	phosphoribosylaminoimidazole-succinocarboxamide synthetase^[1], B2476^[2]^[1], PurC^[2]^[1] , ade, ECK2472, JW2461, b2476
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): purC^[2], OP00076
Regulation/Activity
Quick Links
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Notes

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SAICAR synthase converts 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) to 4-(N-succinylcarboxamide)-5-aminoimidazole ribonucleotide (SAICAR). PurC is elevated 3X during growth at 4C (enabled by Oleispira antarctica Cpn10/60 transgene).^[4]

Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	purC
Mnemonic	Purine
Synonyms	ECK2472, b2476, JW2461, adeg, ade(g)^[1], ade
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	55.93 minutes	MG1655: 2595640..2594927 <gbrowseImage> name=NC_000913:2594927..2595640 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 2518446..2517733 <gbrowseImage> name=NC_012967:2517733..2518446 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 2480732..2481445 <gbrowseImage> name=NC_012759:2480732..2481445 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 2596274..2595561 <gbrowseImage> name=NC_007779:2595561..2596274 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 2687405..2686692 <gbrowseImage> name=NC_010473:2686692..2687405 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
Coding Start (SO:0000323)	MG1655	2594927	Edman degradation	PMID:2120198 PMID:9298646
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Reference	Availability	Comments
ΔpurC (Keio:JW2461)	deletion	deletion	PMID:16738554	Shigen
purC::Tn5KAN-2 (FB20819)	Insertion at nt 61 in Minus orientation		PMID:15262929	E. coli Genome Project:FB20819	contains pKD46
purC80::Tn10	Insertion at 2,595,621 bp in MG1655 (NC_000913)		adapted from Nichols et al.^[5]	CAG18470 = CGSC7413^[6]	Synonyms:
purC50				CGSC:6289
purC60				CGSC:6368
purC80::Tn10				CGSC:7116
purC3137::Tn10kan			PMID:2540407	CGSC:38905
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW2461	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCCAAAAGCAAGCTGAGTTGTA Primer 2:CCGTCCAGCTGTACACCCAGGCG
4C11	Kohara Phage	Genobase	PMID:3038334
5A8	Kohara Phage	Genobase	PMID:3038334
nupC510::Tn10	Linked marker	CAG18468 = CGSC7410^[6]	est. P1 cotransduction: % ^[5]
zfh-208::Tn10	Linked marker	CAG18481 = CGSC7417^[6]	est. P1 cotransduction: 2% ^[5] Synonyms:zff-208::Tn10
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10791	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10791	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000782	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:946957	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0784	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0008156	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	PurC
Synonyms	phosphoribosylaminoimidazole-succinocarboxamide synthetase^[1], B2476^[2]^[1], PurC^[2]^[1] , ade, ECK2472, JW2461, b2476
Product description	PurC^[2]^[3]; Component of phosphoribosylaminoimidazole-succinocarboxamide synthase^[2]^[3] Phosphoribosyl-aminoimidazole-succinocarboxamide synthase; purine synthesis^[4]
EC number (for enzymes)	6.3.2.6^[1]
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0000166	nucleotide binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0547	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003824	catalytic activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR013816	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004639	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00137	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004639	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001636	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004639	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR018236	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004639	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	GOA:spec GO_REF:0000003	IEA: Inferred from Electronic Annotation	EC:6.3.2.6	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR013816	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005524	ATP binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0067	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005829	cytosol	PMID:16858726	IDA: Inferred from Direct Assay		C	Seeded from EcoCyc (v14.0)	complete
	GO:0006164	purine nucleotide biosynthetic process	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00137	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006164	purine nucleotide biosynthetic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001636	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006164	purine nucleotide biosynthetic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR018236	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006164	purine nucleotide biosynthetic process	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0658	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016020	membrane	PMID:16858726	IDA: Inferred from Direct Assay		C	Seeded from EcoCyc (v14.0)	complete
	GO:0016874	ligase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0436	F	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of phosphoribosylaminoimidazole-succinocarboxamide synthase	could be indirect
Protein	dnaK		PMID:15690043	Experiment(s):EBI-880319, EBI-885650
Protein	tig		PMID:15690043	Experiment(s):EBI-880319, EBI-885650
Protein	cca		PMID:15690043	Experiment(s):EBI-885650
Protein	evgA		PMID:15690043	Experiment(s):EBI-885650
Protein	guaC		PMID:15690043	Experiment(s):EBI-885650
Protein	lhr		PMID:15690043	Experiment(s):EBI-885650
Protein	rplL		PMID:15690043	Experiment(s):EBI-885650
Protein	yidZ		PMID:15690043	Experiment(s):EBI-885650
Protein	groL		PMID:16606699	Experiment(s):EBI-1142990
Protein	cca		PMID:19402753	LCMS(ID Probability):99.0
Protein	guaC		PMID:19402753	LCMS(ID Probability):99.0
Protein	lhr		PMID:19402753	LCMS(ID Probability):99.0
Protein	tig		PMID:19402753	LCMS(ID Probability):99.0 MALDI(Z-score):39.130063
Protein	evgA		PMID:19402753	LCMS(ID Probability):99.0
Protein	yidZ		PMID:19402753	LCMS(ID Probability):99.0
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MQKQAELYRG KAKTVYSTEN PDLLVLEFRN DTSAGDGARI EQFDRKGMVN NKFNYFIMSK LAEAGIPTQM ERLLSDTECL VKKLDMVPVE CVVRNRAAGS LVKRLGIEEG IELNPPLFDL FLKNDAMHDP MVNESYCETF GWVSKENLAR MKELTYKAND VLKKLFDDAG LILVDFKLEF GLYKGEVVLG DEFSPDGSRL WDKETLEKMD KDRFRQSLGG LIEAYEAVAR RLGVQLD
Length	237
Mol. Wt	26.995 kDa
pI	4.9 (calculated)
Extinction coefficient	21,430 - 21,805 (calc based on 7 Y, 2 W, and 3 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	3..236	PF01259 SAICAR synthetase		PMID:19920124
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=purC taxon=562,83333 </beststructure>

Models

View models at:

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</protect>

Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16130401	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:946957	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0008156	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P0A7D7	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10791	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10791	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:946957	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000782	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0784	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	E. coli K-12 MC4100	3.33E+03	molecules/cell	Medium: median data from rich and minimal media Temperature (°C): 37 Doubling time (min): Growth Rate(min): Growth phase: other:	emPAI		PMID:18304323
Protein	E. coli K-12 EMG2	1680	molecules/cell	Medium: MOPS glucose minimal Temperature (°C): 37 Doubling time (min): Growth phase: Exponential OD: OD600 = 0.2 to 0.25 other: aerated	Quantitative protein sequencing	Spot ID: M54	PMID: 9298646
Protein	E. coli K-12 MG1655	2986	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	6708	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	1328	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
purC
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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:2595620..2595660 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b2476 (EcoliWiki Page)	NCBI GEO profiles for purC
microarray	GenExpDB:b2476 (EcoliWiki Page)	Summary of data for purC from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
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Notes

Accessions Related to purC Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG10791	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0784	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b2476
EcoGene	EcoGene:EG10791	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000782	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0008156	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000029137 (score: 1.000; bootstrap: 99%)	From Inparanoid:20070104
Apis mellifera	ENSAPMP00000007776 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Bos taurus	ENSBTAP00000013985 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Caenorhabditis briggsae	WBGene00026484 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Caenorhabditis elegans	WBGene00015116 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Canis familiaris	ENSCAFP00000003256 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Ciona intestinalis	ENSCINP00000018504 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Danio rerio	ZDB-GENE-030131-9762 (score: 1.000; bootstrap: 100%) ZDB-CDNA-040425-626 (score: 1.000; bootstrap: 100%) ZDB-CDNA-040625-112 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Drosophila melanogaster	FBgn0020513 (score: 1.000; bootstrap: 100%) FBgn0032437 (score: 0.572)	From Inparanoid:20070104
Drosophila pseudoobscura	GA17827-PA (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Gallus gallus	ENSGALP00000031463 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Homo sapiens	ENSP00000264221 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Monodelphis domestica	ENSMODP00000025889 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Mus musculus	MGI:1914304 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Rattus norvegicus	ENSRNOP00000002890 (score: 1.000; bootstrap: 100%) ENSRNOP00000034583 (score: 0.657)	From Inparanoid:20070104
Saccharomyces cerevisiae	YAR015W (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Schizosaccharomyces pombe	SPBC4090 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Takifugu rubripes	NEWSINFRUP00000146118 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Tetraodon nigroviridis	GSTENP00032745001 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Xenopus tropicalis	ENSXETP00000039370 (score: 1.000; bootstrap: 99%)	From Inparanoid:20070104
Shigella flexneri	PURC	From SHIGELLACYC
E. coli O157	PURC	From ECOO157CYC
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Panther (EcoliWiki Page)	PTHR11609:SF3
Superfamily (EcoliWiki Page)	SUPERFAMILY:56104
Pfam (EcoliWiki Page)	PF01259 SAICAR synthetase
EcoCyc	EcoCyc:EG10791	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10791	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000782	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0784	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0008156	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 ^1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 ^2.7 ^2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
↑ ^6.0 ^6.1 ^6.2 CGSC: The Coli Genetics Stock Center

purC:On One Page

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Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to purC Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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