pstB:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

pstB

Gene Synonym(s)

ECK3718, b3725, JW3703, phoT[1], phoT

Product Desc.

PstB[2][3];

Component of phosphate ABC transporter[2][3]

Phosphate transport, high-affinity, cytoplasmic ATP-binding protein[4]

Product Synonyms(s)

phosphate transporter subunit[1], ATP-binding component of ABC superfamily[1], B3725[2][1], PhoT[2][1], PstB[2][1] , ECK3718, JW3703, phoT, b3725

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): pstSCAB-phoU[2], OP00284, phoT, pstSCABphoU

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

pstB

Mnemonic

P-specific transport

Synonyms

ECK3718, b3725, JW3703, phoT[1], phoT

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

84.18 minutes 

MG1655: 3906389..3905616
<gbrowseImage> name=NC_000913:3905616..3906389 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3868733..3867960
<gbrowseImage> name=NC_012967:3867960..3868733 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3793949..3794722
<gbrowseImage> name=NC_012759:3793949..3794722 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3728315..3729088
<gbrowseImage> name=NC_007779:3728315..3729088 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4003973..4003200
<gbrowseImage> name=NC_010473:4003200..4003973 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

pstB(del) (Keio:JW3703)

deletion

deletion

PMID:16738554

Shigen
CGSC10707[5]

pstB::Tn5KAN-I-SceI (FB21418)

Insertion at nt 405 in Minus orientation

PMID:15262929

E. coli Genome Project:FB21418

contains pKD46

pstB::Tn5KAN-I-SceI (FB21419)

Insertion at nt 405 in Minus orientation

PMID:15262929

E. coli Genome Project:FB21419

does not contain pKD46

pstBG48I

G48I

Loss of phosphate transport

seeded from UniProt:P0AAH0

pstBK49Q

K49Q

Loss of phosphate transport

seeded from UniProt:P0AAH0

pstB(del)::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938

pstB(del)::kan

deletion

Biolog:respiration

unable to respire L-Aspartate

PMID:16095938

pstB608(del-ins)::kan

PMID:10829079

CGSC:65933

pstB629(del-ins,::FRT)

PMID:10829079

CGSC:65936

pstB756(del)::kan

PMID:16738554

CGSC:102506

ptsB in strain 10B5

Resistant to

Resistant to Arsenate

PMID:765745

Strain: 10B5

pstB in strain UR1

Resistant to

Resistant to Arsenate

PMID:4570598

Strain: UR1

pstB756(del)::FRT

Mutagenesis rate

Decreased stress-induced mutagenesis (SIM) phenotype.

PMID:23224554

Parental Strain: SMR4562

Experimental Strain: SMR12232

Mutation Rate was comparatively weak, to other strains, with decrease only happening in 33-67% of wild type population.

pstB756(del)::FRT

Sensitivity to

Increase sensitivity to UV.

PMID:23224554

Experimental Strain: SMR12050

Parental strain: SMR4562

See Table S1 & S7

CAG45114 pstB756(del)::FRTKanFRT

Deletion

SigmaE activity

Decrease in SigmaE activity

PMID:23224554

Parental Strain: CAG45114 Experimental Strain: SMR15301

See table S11 for experimental data.

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3703

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAGTATGGTTGAAACTGCCCC

Primer 2:CCACCGTAACGACCGGTGATGTA

7A1

Kohara Phage

Genobase

PMID:3038334

zid-501::Tn10

Linked marker

CAG18499 = CGSC7458[5]

est. P1 cotransduction: 29% [6]

rbsD296::Tn10

Linked marker

CAG18501 = CGSC7460[5]

est. P1 cotransduction: 40% [6]
Synonyms:zie-296::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10783

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10783

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000774

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948240

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0776

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012179

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

PstB

Synonyms

phosphate transporter subunit[1], ATP-binding component of ABC superfamily[1], B3725[2][1], PhoT[2][1], PstB[2][1] , ECK3718, JW3703, phoT, b3725

Product description

PstB[2][3];

Component of phosphate ABC transporter[2][3]

Phosphate transport, high-affinity, cytoplasmic ATP-binding protein[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0005315

inorganic phosphate transmembrane transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005670

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003439

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015850

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017871

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01702

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc (v14.0)

complete

GO:0006817

phosphate transport

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01702

P

Seeded from EcoCyc (v14.0)

complete

GO:0006817

phosphate transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005670

P

Seeded from EcoCyc (v14.0)

complete

GO:0006817

phosphate transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015850

P

Seeded from EcoCyc (v14.0)

complete

GO:0006817

phosphate transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0592

P

Seeded from EcoCyc (v14.0)

complete

GO:0015415

phosphate transmembrane-transporting ATPase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01702

F

Seeded from EcoCyc (v14.0)

complete

GO:0015415

phosphate transmembrane-transporting ATPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015850

F

Seeded from EcoCyc (v14.0)

complete

GO:0015415

phosphate transmembrane-transporting ATPase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:3.6.3.27

F

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005670

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015850

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc (v14.0)

complete

GO:0016887

ATPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003439

F

Seeded from EcoCyc (v14.0)

complete

GO:0016887

ATPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017871

F

Seeded from EcoCyc (v14.0)

complete

GO:0017111

nucleoside-triphosphatase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

GO:0019898

extrinsic to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9903

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of phosphate ABC transporter

could be indirect

Protein

cfa

PMID:15690043

Experiment(s):EBI-891381

Protein

gatY

PMID:15690043

Experiment(s):EBI-878876

Protein

groL

PMID:15690043

Experiment(s):EBI-878876, EBI-891381

Protein

narG

PMID:15690043

Experiment(s):EBI-878876

Protein

rhsC

PMID:15690043

Experiment(s):EBI-878876

Protein

tufA

PMID:15690043

Experiment(s):EBI-878876

Protein

frmA

PMID:15690043

Experiment(s):EBI-891381

Protein

ycfS

PMID:15690043

Experiment(s):EBI-891381

Protein

groL

PMID:16606699

Experiment(s):EBI-1146582

Protein

glpD

PMID:16606699

Experiment(s):EBI-1146582

Protein

groS

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):27.048283

Protein

groL

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):17.053160

Protein

ycfS

PMID:19402753

LCMS(ID Probability):99.0

Protein

frmA

PMID:19402753

LCMS(ID Probability):99.0

Protein

cfa

PMID:19402753

LCMS(ID Probability):99.0

Protein

tufB

PMID:19402753

MALDI(Z-score):24.338597

Protein

dnaJ

PMID:19402753

LCMS(ID Probability):99.0 MALDI(Z-score):37.277132

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

cytoplasm

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSMVETAPSK IQVRNLNFYY GKFHALKNIN LDIAKNQVTA FIGPSGCGKS TLLRTFNKMF
ELYPEQRAEG EILLDGDNIL TNSQDIALLR AKVGMVFQKP TPFPMSIYDN IAFGVRLFEK
LSRADMDERV QWALTKAALW NETKDKLHQS GYSLSGGQQQ RLCIARGIAI RPEVLLLDEP
CSALDPISTG RIEELITELK QDYTVVIVTH NMQQAARCSD HTAFMYLGEL IEFSNTDDLF
TKPAKKQTED YITGRYG
Length

257

Mol. Wt

29.028 kDa

pI

6.5 (calculated)

Extinction coefficient

24,410 - 24,910 (calc based on 9 Y, 2 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0AAH0

Domain

50..182

PF00005 ABC transporter

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=pstB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131593

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948240

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012179

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AAH0

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10783

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10783

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948240

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000774

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0776

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

Ecoli K-12

214.905+/-1.135

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.33157+/-0.01043

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

0.65912031

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

1847

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

955

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

2470

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

pstSCAB-phoU

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3906369..3906409 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3725 (EcoliWiki Page)

NCBI GEO profiles for pstB

microarray

GenExpDB:b3725 (EcoliWiki Page)

Summary of data for pstB from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to pstB Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10783

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0776

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3725

EcoGene

EcoGene:EG10783

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000774

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012179

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Xenopus tropicalis

  • ENSXETP00000033405 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

PSTB

From SHIGELLACYC

E. coli O157

PSTB

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00005 ABC transporter

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Panther (EcoliWiki Page)

PTHR24220:SF24

EcoCyc

EcoCyc:EG10783

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10783

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000774

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0776

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012179

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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