proC:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

proC

Gene Synonym(s)

ECK0381, b0386, JW0377, pro2, pro3, pro(3)[1], pro, Pro2

Product Desc.

ProC[2][3];

Component of pyrroline-5-carboxylate-reductase[2][3]

Pyrroline-5-carboxylate reductase, proline biosynthesis[4]

Product Synonyms(s)

pyrroline-5-carboxylate reductase, NAD(P)-binding[1], B0386[2][1], ProC[2][1] , ECK0381, JW0377, pro, Pro2, b0386

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): proC[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

proC

Mnemonic

Proline

Synonyms

ECK0381, b0386, JW0377, pro2, pro3, pro(3)[1], pro, Pro2

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

8.71 minutes 

MG1655: 404868..404059
<gbrowseImage> name=NC_000913:404059..404868 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 373290..372481
<gbrowseImage> name=NC_012967:372481..373290 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 306818..307627
<gbrowseImage> name=NC_012759:306818..307627 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 404868..404059
<gbrowseImage> name=NC_007779:404059..404868 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 344199..343390
<gbrowseImage> name=NC_010473:343390..344199 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

404059

Edman degradation

PMID:6089111


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔproC (Keio:JW0377)

deletion

deletion

Auxotrophies

Requires proline for growth

PMID:16738554

Shigen

CGSC8554[5]

proC14

Auxotrophies

Requires proline for growth

CGSC:4929

proC32

Auxotrophies

Requires proline for growth

CGSC:5085

proC47

Auxotrophies

Requires proline for growth

CGSC:5514

proC34

Auxotrophies

Requires proline for growth

CGSC:5702

proC24

Auxotrophies

Requires proline for growth

CGSC:5825

proC55

Auxotrophies

Requires proline for growth

CGSC:6485

proC83

Auxotrophies

Requires proline for growth

CGSC:10340

proC43

Auxotrophies

Requires proline for growth

CGSC:11027

proC29

Auxotrophies

Requires proline for growth

CGSC:11502

proC9999

Auxotrophies

Requires proline for growth

CGSC:39363

proC677(tetR)::Tn5-132

Auxotrophies

Requires proline for growth

CGSC:75247

proC471::Tn5

Auxotrophies

Requires proline for growth

CGSC:90706

ΔproC751::kan

deletion

deletion

Auxotrophies

Requires proline for growth

PMID:16738554

CGSC:102470


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0377

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGAAAAGAAAATCGGTTTTAT

Primer 2:CCGGATTTGCTGAGTTTTTCTGA

1A10

Kohara Phage

Genobase

PMID:3038334

6A12

Kohara Phage

Genobase

PMID:3038334

zai-3053::Tn10

Linked marker

CAG18091 = CGSC7336[5]

est. P1 cotransduction: 72% [6]
Synonyms:zaj-3053::Tn10 nnnCAG18091 also carries proC9999 (CGSC).

tsx-247::Tn10

Linked marker

CAG12148 = CGSC7337[5]

est. P1 cotransduction: 35% [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10769

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10769

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000760

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945034

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0762

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001338

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

ProC

Synonyms

pyrroline-5-carboxylate reductase, NAD(P)-binding[1], B0386[2][1], ProC[2][1] , ECK0381, JW0377, pro, Pro2, b0386

Product description

ProC[2][3];

Component of pyrroline-5-carboxylate-reductase[2][3]

Pyrroline-5-carboxylate reductase, proline biosynthesis[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0004735

pyrroline-5-carboxylate reductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000304

F

Seeded from EcoCyc (v14.0)

complete

GO:0004735

pyrroline-5-carboxylate reductase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.5.1.2

F

Seeded from EcoCyc (v14.0)

complete

GO:0004735

pyrroline-5-carboxylate reductase activity

PMID:12133

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0004735

pyrroline-5-carboxylate reductase activity

PMID:6296787

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006561

proline biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000304

P

Seeded from EcoCyc (v14.0)

complete

GO:0006561

proline biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0641

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016040

P

Seeded from EcoCyc (v14.0)

complete

GO:0008652

cellular amino acid biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0028

P

Seeded from EcoCyc (v14.0)

complete

GO:0050661

NADP or NADPH binding

PMID:6296787

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000304

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of pyrroline-5-carboxylate-reductase

could be indirect

Protein

ydiA

PMID:16606699

Experiment(s):EBI-1136420

Protein

nadE

PMID:16606699

Experiment(s):EBI-1136420

Protein

rpsP

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplK

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplJ

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplE

PMID:19402753

LCMS(ID Probability):99.6

Protein

rraB

PMID:19402753

LCMS(ID Probability):99.6

Protein

gapA

PMID:19402753

LCMS(ID Probability):99.6

Protein

gadB

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsH

PMID:19402753

LCMS(ID Probability):99.6

Protein

eno

PMID:19402753

LCMS(ID Probability):99.6

Protein

hupA

PMID:19402753

LCMS(ID Probability):99.6

Protein

tufB

PMID:19402753

MALDI(Z-score):21.691492

Protein

yfiD

PMID:19402753

LCMS(ID Probability):99.6

Protein

pflB

PMID:19402753

LCMS(ID Probability):99.6

Protein

ahpC

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplX

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsA

PMID:19402753

LCMS(ID Probability):99.6

Protein

hupB

PMID:19402753

LCMS(ID Probability):99.6

Protein

dnaN

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):36.383184

Protein

rpsJ

PMID:19402753

LCMS(ID Probability):99.6

Protein

gyrA

PMID:19402753

LCMS(ID Probability):99.6

Protein

tig

PMID:19402753

LCMS(ID Probability):99.6

Protein

yebC

PMID:19402753

LCMS(ID Probability):99.6

Protein

parC

PMID:19402753

LCMS(ID Probability):99.6

Protein

dps

PMID:19402753

LCMS(ID Probability):99.6

Protein

mdh

PMID:19402753

LCMS(ID Probability):99.6

Protein

frdA

PMID:19402753

LCMS(ID Probability):98.5

Protein

ppk

PMID:19402753

LCMS(ID Probability):99.4

Protein

fabB

PMID:19402753

LCMS(ID Probability):99.6

Protein

dksA

PMID:19402753

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MEKKIGFIGC GNMGKAILGG LIASGQVLPG QIWVYTPSPD KVAALHDQFG INAAESAQEV
AQIADIIFAA VKPGIMIKVL SEITSSLNKD SLVVSIAAGV TLDQLARALG HDRKIIRAMP
NTPALVNAGM TSVTPNALVT PEDTADVLNI FRCFGEAEVI AEPMIHPVVG VSGSSPAYVF
MFIEAMADAA VLGGMPRAQA YKFAAQAVMG SAKMVLETGE HPGALKDMVC SPGGTTIEAV
RVLEEKGFRA AVIEAMTKCM EKSEKLSKS
Length

269

Mol. Wt

28.144 kDa

pI

5.7 (calculated)

Extinction coefficient

9,970 - 10,470 (calc based on 3 Y, 1 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

4..99

PF03807 NADP oxidoreductase coenzyme F420-dependent

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=proC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128371

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945034

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001338

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A9L8

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10769

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10769

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945034

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000760

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0762

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MG1655

1913

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

1150

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

1528

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

proC

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:404848..404888 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0386 (EcoliWiki Page)

NCBI GEO profiles for proC

microarray

GenExpDB:b0386 (EcoliWiki Page)

Summary of data for proC from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to proC Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10769

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0762

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0386

EcoGene

EcoGene:EG10769

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000760

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001338

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000011470 (score: 1.000; bootstrap: 88%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000018847 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G14800 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000000046 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000000047 (score: 0.830)
  • ENSBTAP00000022364 (score: 0.122)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00036235 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00010924 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000023787 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000008848 (score: 0.807)
  • ENSCAFP00000001902 (score: 0.095)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000006770 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000011143 (score: 0.079)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050522-26 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050522-26 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2615 (score: 0.828)
  • ZDB-GENE-040426-1675 (score: 0.828)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0232207 (score: 1.000; bootstrap: 100%)
  • DDB0232206 (score: 0.464)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0038516 (score: 1.000; bootstrap: 53%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19170-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000025936 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000220966 (score: 1.000; bootstrap: 100%)
  • ENSP00000352100 (score: 0.081)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000019243 (score: 1.000; bootstrap: 99%)
  • ENSMMUP00000016933 (score: 0.111)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000007361 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000003807 (score: 0.859)
  • ENSMODP00000014018 (score: 0.127)

From Inparanoid:20070104

Mus musculus

  • MGI:2384795 (score: 1.000; bootstrap: 97%)
  • MGI:1277956 (score: 0.798)

From Inparanoid:20070104

Oryza gramene

  • Q5EI64 (score: 1.000; bootstrap: 100%)
  • Q84UC6 (score: 0.831)
  • Q4TZJ2 (score: 0.791)
  • Q8GT01 (score: 0.780)
  • Q5JMU4 (score: 0.316)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000035326 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000004379 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000011899 (score: 0.105)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YER023W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAPYUG75 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000131351 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00015680001 (score: 1.000; bootstrap: 100%)
  • GSTENP00018566001 (score: 0.071)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000011845 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Shigella flexneri

PROC

From SHIGELLACYC

E. coli O157

PROC

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF03807 NADP oxidoreductase coenzyme F420-dependent

Superfamily (EcoliWiki Page)

SUPERFAMILY:48179

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

Panther (EcoliWiki Page)

PTHR11645:SF0

EcoCyc

EcoCyc:EG10769

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10769

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000760

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0762

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001338

Escherichia coli str. K-12 substr. MG1655

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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