ppiB:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

ppiB

Gene Synonym(s)

ECK0518, b0525, JW0514[1], JW0514

Product Desc.

peptidyl-prolyl cis-trans isomerase B (rotamase B)[2][3]

Peptidylprolyl-cis-trans-isomerase B, rotamase[4]

Product Synonyms(s)

peptidyl-prolyl cis-trans isomerase B (rotamase B)[1], B0525[2][1], PpiB[2][1] , ECK0518, JW0514, b0525

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): lpxH[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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PpiB is down 6X during growth at 4C (enabled by Oleispira antarctica Cpn10/60 transgene).[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ppiB

Mnemonic

Peptidylprolyl isomerase

Synonyms

ECK0518, b0525, JW0514[1], JW0514

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

11.92 minutes 

MG1655: 553660..553166
<gbrowseImage> name=NC_000913:553166..553660 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 526545..526051
<gbrowseImage> name=NC_012967:526051..526545 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 455926..456420
<gbrowseImage> name=NC_012759:455926..456420 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 553660..553166
<gbrowseImage> name=NC_007779:553166..553660 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 492992..492498
<gbrowseImage> name=NC_010473:492498..492992 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

553166

Edman degradation

PMID:9298646
PMID:9600841
PMID:9740056


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ppiB(del) (Keio:JW0514)

deletion

deletion

PMID:16738554

Shigen

CGSC8657[5]

ppiB737(del)::kan

PMID:16738554

CGSC:102430


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Notes

Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0514

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGTTACTTTCCACACCAATCA

Primer 2:CCCTCGCTAACGGTCACGCTTTC

6E7

Kohara Phage

Genobase

PMID:3038334

purK79::Tn10

Linked marker

CAG12171 = CGSC7342[5]

est. P1 cotransduction: 97% [6]
Synonyms:purE79::Tn10

dsbG601::Tn10

Linked marker

CAG12149 = CGSC7346[5]

est. P1 cotransduction: % [6]
Synonyms:zbd-601::Tn10, zbe-601::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10758

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10758

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000749

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:949038

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0751

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001806

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

PpiB

Synonyms

peptidyl-prolyl cis-trans isomerase B (rotamase B)[1], B0525[2][1], PpiB[2][1] , ECK0518, JW0514, b0525

Product description

peptidyl-prolyl cis-trans isomerase B (rotamase B)[2][3]

Peptidylprolyl-cis-trans-isomerase B, rotamase[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002130

F

Seeded from EcoCyc (v14.0)

complete

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020892

F

Seeded from EcoCyc (v14.0)

complete

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:5.2.1.8

F

Seeded from EcoCyc (v14.0)

complete

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0697

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006457

protein folding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002130

P

Seeded from EcoCyc (v14.0)

complete

GO:0006457

protein folding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020892

P

Seeded from EcoCyc (v14.0)

complete

GO:0006457

protein folding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0697

P

Seeded from EcoCyc (v14.0)

complete

GO:0016853

isomerase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0413

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

pta

PMID:16606699

Experiment(s):EBI-1137072

Protein

mukB

PMID:16606699

Experiment(s):EBI-1137072

Protein

putA

PMID:16606699

Experiment(s):EBI-1137072

Protein

clpX

PMID:16606699

Experiment(s):EBI-1137072

Protein

yifE

PMID:16606699

Experiment(s):EBI-1137072

Protein

lacZ

PMID:16606699

Experiment(s):EBI-1137072

Protein

rumB

PMID:16606699

Experiment(s):EBI-1137072

Protein

yfbU

PMID:16606699

Experiment(s):EBI-1137072

Protein

rpoB

PMID:16606699

Experiment(s):EBI-1137072

Protein

rplN

PMID:16606699

Experiment(s):EBI-1137072

Protein

accC

PMID:16606699

Experiment(s):EBI-1137072

Protein

dadA

PMID:16606699

Experiment(s):EBI-1137072

Protein

dnaK

PMID:16606699

Experiment(s):EBI-1137072

Protein

ydcS

PMID:16606699

Experiment(s):EBI-1137072

Protein

glpD

PMID:16606699

Experiment(s):EBI-1137072

Protein

hflK

PMID:16606699

Experiment(s):EBI-1137072

Protein

pflB

PMID:16606699

Experiment(s):EBI-1137072

Protein

fucK

PMID:15690043

Experiment(s):EBI-894121

Protein

hflB

PMID:15690043

Experiment(s):EBI-894121

Protein

rhsC

PMID:15690043

Experiment(s):EBI-894121

Protein

yhjU

PMID:15690043

Experiment(s):EBI-894121

Protein

bcsG

PMID:19402753

LCMS(ID Probability):99.0

Protein

ftsH

PMID:19402753

LCMS(ID Probability):99.0

Protein

rhsC

PMID:19402753

LCMS(ID Probability):99.0

Protein

fucK

PMID:19402753

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

cytoplasm

Cytoplasm

PMID:9268657

EchoLocation:ppiB


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MVTFHTNHGD IVIKTFDDKA PETVKNFLDY CREGFYNNTI FHRVINGFMI QGGGFEPGMK
QKATKEPIKN EANNGLKNTR GTLAMARTQA PHSATAQFFI NVVDNDFLNF SGESLQGWGY
CVFAEVVDGM DVVDKIKGVA TGRSGMHQDV PKEDVIIESV TVSE
Length

164

Mol. Wt

18.152 kDa

pI

5.6 (calculated)

Extinction coefficient

9,970 - 10,220 (calc based on 3 Y, 1 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

1..162

PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ppiB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128509

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:949038

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001806

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P23869

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10758

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10758

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:949038

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000749

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0751

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

4.18E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

384.865+/-2.507

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.2868+/-0.01424

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

0.532388664

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 EMG2

780

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: M40

PMID: 9298646

Protein

E. coli K-12 EMG2

80

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: M135

PMID: 9298646

Protein

E. coli K-12 MG1655

25909

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

8773

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

15279

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

lpxH

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:553640..553680 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0525 (EcoliWiki Page)

NCBI GEO profiles for ppiB

microarray

GenExpDB:b0525 (EcoliWiki Page)

Summary of data for ppiB from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (553565..553895) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ10; Well:E5[7]

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Notes

Accessions Related to ppiB Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10758

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0751

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0525

EcoGene

EcoGene:EG10758

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000749

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001806

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000023432 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000000456 (score: 0.673)
  • ENSANGP00000016027 (score: 0.335)
  • ENSANGP00000014257 (score: 0.335)
  • ENSANGP00000027110 (score: 0.169)
  • ENSANGP00000010906 (score: 0.110)
  • ENSANGP00000015053 (score: 0.091)
  • ENSANGP00000020778 (score: 0.083)
  • ENSANGP00000011942 (score: 0.079)
  • ENSANGP00000018327 (score: 0.075)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000007038 (score: 1.000; bootstrap: 71%)
  • ENSAPMP00000009635 (score: 0.053)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G44600 (score: 1.000; bootstrap: 65%)
  • AT2G36130 (score: 0.067)
  • AT1G01940 (score: 0.064)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000003071 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000029375 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000021957 (score: 0.938)
  • ENSBTAP00000002051 (score: 0.264)
  • ENSBTAP00000012520 (score: 0.205)
  • ENSBTAP00000015924 (score: 0.176)
  • ENSBTAP00000022213 (score: 0.165)
  • ENSBTAP00000022582 (score: 0.161)
  • ENSBTAP00000003624 (score: 0.158)
  • ENSBTAP00000039852 (score: 0.154)
  • ENSBTAP00000022180 (score: 0.154)
  • ENSBTAP00000001620 (score: 0.147)
  • ENSBTAP00000006026 (score: 0.143)
  • ENSBTAP00000000178 (score: 0.121)
  • ENSBTAP00000021601 (score: 0.103)
  • ENSBTAP00000010705 (score: 0.077)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00029907 (score: 1.000; bootstrap: 74%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000891 (score: 1.000; bootstrap: 77%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000022641 (score: 1.000; bootstrap: 64%)
  • ENSCAFP00000005135 (score: 0.096)
  • ENSCAFP00000002060 (score: 0.071)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014201 (score: 1.000; bootstrap: 60%)
  • ENSCINP00000010020 (score: 0.070)
  • ENSCINP00000015590 (score: 0.060)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040625-159 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040625-229 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040625-222 (score: 0.371)
  • ZDB-GENE-040426-1096 (score: 0.371)
  • ZDB-CDNA-040425-2050 (score: 0.239)
  • ZDB-GENE-040426-1118 (score: 0.239)
  • ZDB-CDNA-051009-3 (score: 0.235)
  • ZDB-GENE-051009-1 (score: 0.235)
  • ZDB-CDNA-040425-1462 (score: 0.163)
  • ZDB-GENE-030131-6251 (score: 0.163)
  • ZDB-CDNA-040425-2028 (score: 0.124)
  • ZDB-CDNA-040625-54 (score: 0.120)
  • ZDB-GENE-040625-34 (score: 0.120)
  • ZDB-CDNA-040625-43 (score: 0.108)
  • ZDB-CDNA-040425-1495 (score: 0.108)
  • ZDB-GENE-030131-7459 (score: 0.108)
  • ZDB-CDNA-040912-54 (score: 0.104)
  • ZDB-GENE-040912-52 (score: 0.104)
  • ZDB-CDNA-040625-180 (score: 0.100)
  • ZDB-CDNA-040425-2902 (score: 0.100)
  • ZDB-GENE-040426-1955 (score: 0.100)
  • ZDB-CDNA-040625-187 (score: 0.096)
  • ZDB-GENE-040625-127 (score: 0.096)
  • ZDB-CDNA-040425-1722 (score: 0.092)
  • ZDB-GENE-040426-796 (score: 0.092)
  • ZDB-GENE-050522-70 (score: 0.072)
  • ZDB-CDNA-050809-2 (score: 0.068)
  • ZDB-CDNA-040425-3769 (score: 0.068)
  • ZDB-GENE-040426-2822 (score: 0.068)
  • ZDB-GENE-030131-8556 (score: 0.068)
  • ZDB-CDNA-050522-70 (score: 0.060)
  • ZDB-CDNA-051030-45 (score: 0.056)
  • ZDB-GENE-051030-126 (score: 0.056)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0184037 (score: 1.000; bootstrap: 91%)
  • DDB0218595 (score: 0.285)
  • DDB0216615 (score: 0.272)
  • DDB0191208 (score: 0.230)
  • DDB0202158 (score: 0.157)
  • DDB0215524 (score: 0.115)
  • DDB0185614 (score: 0.077)
  • DDB0215377 (score: 0.072)
  • DDB0205799 (score: 0.064)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0035141 (score: 1.000; bootstrap: 100%)
  • FBgn0034109 (score: 1.000; bootstrap: 100%)
  • FBgn0035027 (score: 1.000; bootstrap: 100%)
  • FBgn0036207 (score: 0.239)
  • FBgn0034753 (score: 0.211)
  • FBgn0033527 (score: 0.158)
  • FBgn0036415 (score: 0.147)
  • FBgn0004432 (score: 0.147)
  • FBgn0033089 (score: 0.147)
  • FBgn0002936 (score: 0.147)
  • FBgn0039581 (score: 0.130)
  • FBgn0028382 (score: 0.109)
  • FBgn0027617 (score: 0.102)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA20560-PA (score: 1.000; bootstrap: 100%)
  • GA17492-PA (score: 1.000; bootstrap: 100%)
  • GA12606-PA (score: 0.095)
  • GA11192-PA (score: 0.094)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000023753 (score: 1.000; bootstrap: 53%)
  • ENSGALP00000013375 (score: 0.069)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000334553 (score: 1.000; bootstrap: 84%)
  • ENSP00000244367 (score: 0.073)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000024384 (score: 1.000; bootstrap: 83%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000017942 (score: 1.000; bootstrap: 62%)
  • ENSMODP00000018799 (score: 0.100)
  • ENSMODP00000016893 (score: 0.070)

From Inparanoid:20070104

Mus musculus

  • MGI:1917475 (score: 1.000; bootstrap: 100%)
  • MGI:2443069 (score: 1.000; bootstrap: 100%)
  • MGI:2447857 (score: 0.387)
  • MGI:1916066 (score: 0.242)
  • MGI:1914535 (score: 0.242)
  • MGI:1914668 (score: 0.199)
  • MGI:1914988 (score: 0.172)
  • MGI:3642937 (score: 0.156)
  • MGI:2445173 (score: 0.141)
  • MGI:97346 (score: 0.141)
  • MGI:3645078 (score: 0.129)
  • MGI:97751 (score: 0.125)
  • MGI:3647551 (score: 0.121)
  • MGI:97749 (score: 0.121)
  • MGI:106499 (score: 0.117)
  • MGI:3648545 (score: 0.105)
  • MGI:97750 (score: 0.102)
  • MGI:894323 (score: 0.090)
  • MGI:1917118 (score: 0.090)
  • MGI:2145814 (score: 0.078)

From Inparanoid:20070104

Oryza gramene

  • Q6ZJ09 (score: 1.000; bootstrap: 81%)
  • Q6ZJ10 (score: 0.576)
  • Q7XXQ2 (score: 0.373)
  • Q93VG0 (score: 0.103)
  • Q9SNN7 (score: 0.098)
  • Q6XPZ4 (score: 0.073)
  • Q75M32 (score: 0.072)
  • Q6XPZ6 (score: 0.070)
  • Q9AQU0 (score: 0.066)
  • P21569 (score: 0.056)
  • Q6ZH98 (score: 0.055)
  • Q40673 (score: 0.055)
  • Q40674 (score: 0.052)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000024309 (score: 1.000; bootstrap: 81%)
  • ENSPTRP00000030937 (score: 0.102)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000018284 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000016863 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000035467 (score: 0.399)
  • ENSRNOP00000000630 (score: 0.256)
  • ENSRNOP00000017832 (score: 0.252)
  • ENSRNOP00000021437 (score: 0.209)
  • ENSRNOP00000035797 (score: 0.182)
  • ENSRNOP00000010216 (score: 0.155)
  • ENSRNOP00000009179 (score: 0.128)
  • ENSRNOP00000023485 (score: 0.128)
  • ENSRNOP00000009407 (score: 0.128)
  • ENSRNOP00000022828 (score: 0.112)
  • ENSRNOP00000043488 (score: 0.112)
  • ENSRNOP00000037606 (score: 0.109)
  • ENSRNOP00000020104 (score: 0.105)
  • ENSRNOP00000001044 (score: 0.101)
  • ENSRNOP00000003646 (score: 0.097)
  • ENSRNOP00000014382 (score: 0.093)
  • ENSRNOP00000047833 (score: 0.081)
  • ENSRNOP00000032159 (score: 0.066)
  • ENSRNOP00000042983 (score: 0.062)
  • ENSRNOP00000047822 (score: 0.058)
  • ENSRNOP00000045923 (score: 0.050)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR304C (score: 1.000; bootstrap: 100%)
  • YHR057C (score: 0.406)
  • YDR155C (score: 0.301)
  • YML078W (score: 0.278)
  • YLR216C (score: 0.245)
  • YJR032W (score: 0.115)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC5534 (score: 1.000; bootstrap: 75%)
  • SPBP8B75 (score: 0.057)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000176289 (score: 1.000; bootstrap: 54%)
  • NEWSINFRUP00000175635 (score: 0.055)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00028569001 (score: 1.000; bootstrap: 66%)
  • GSTENP00029024001 (score: 0.105)
  • GSTENP00025345001 (score: 0.055)
  • GSTENP00010751001 (score: 0.054)
  • GSTENP00016428001 (score: 0.052)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000017644 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

PPIB

From SHIGELLACYC

E. coli O157

PPIB

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:50891

Panther (EcoliWiki Page)

PTHR11071:SF29

Pfam (EcoliWiki Page)

PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

EcoCyc

EcoCyc:EG10758

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10758

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000749

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0751

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001806

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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