plsB:On One Page
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Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
Quickview | | Gene | | Product(s) | | Expression| | Evolution | | References | |
Quickview
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Standard Name |
plsB |
---|---|
Gene Synonym(s) |
ECK4033, b4041, JW4001[1], JW4001 |
Product Desc. |
GLYCEROL-3-P- Glycerol-3-phosphate acyltransferase[2] |
Product Synonyms(s) |
glycerol-3-phosphate O-acyltransferase[1], B4041[3][1], PlsB[3][1] , ECK4033, JW4001, b4041 |
Function from GO |
<GO_nr /> |
Knock-Out Phenotype | |
Regulation/Expression | |
Regulation/Activity | |
Quick Links | |
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</protect> See Help:Quickview for help with entering information in the Quickview table. <protect></protect>
Notes
HT_Cmplx46_Mem: MdoH+PlsB.[2]
Gene
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Nomenclature
See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.
Standard name |
plsB |
---|---|
Mnemonic |
Phospholipid synthesis |
Synonyms |
ECK4033, b4041, JW4001[1], JW4001 |
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Notes
Location(s) and DNA Sequence
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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.
Strain | Map location | Genome coordinates | Genome browsers | Sequence links |
---|---|---|---|---|
MG1655 |
91.65 minutes |
MG1655: 4254489..4252066 |
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NC_012967: 4235398..4232975 |
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NC_012759: 4190911..4193334 |
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W3110 |
|
W3110: 4260056..4257633 |
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DH10B: 4354185..4351762 |
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Notes
Sequence Features
See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.
Feature Type | Strain | Genomic Location | Evidence | Reference | Notes |
---|---|---|---|---|---|
Coding Start (SO:0000323) |
4252069 |
Edman degradation |
PMID:6350296 |
| |
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Notes
Alleles and Phenotypes
See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.
Allele | Nt change(s) | AA change(s) | Phenotype: Type | Phenotype: Description | Reference | Availability | Comments |
---|---|---|---|---|---|---|---|
plsB26 |
G1045A[4] |
Ala349Thr[4] |
Growth Phenotype |
Requires glycerol-3-phosphate for growth [5]. However, the block in phospholipid synthesis is only complete in a plsB gspA double mutant.[6] |
"The PlsB protein had a significantly reduced glycerol-3-phosphate acyltransferase activity coupled with an elevated Km for glycerol-3-phosphate."[4] |
||
plsBS308A |
S308A |
No effect |
seeded from UniProt:P0A7A7 | ||||
plsBD311A |
D311A |
Prevents assembly into the membrane, suggesting that it paticipates to folding |
seeded from UniProt:P0A7A7 | ||||
plsBD311G |
D311G |
Strongly reduced acyltransferase activity |
seeded from UniProt:P0A7A7 | ||||
plsBH306A |
H306A |
Abolishes acyltransferase activity |
seeded from UniProt:P0A7A7 | ||||
plsBH306G |
H306G |
Reduced acyltransferase activity |
seeded from UniProt:P0A7A7 | ||||
plsBA349T |
A349T |
In plsB26; results in high KM for glycerol-3-phosphate and reduced specific activity |
seeded from UniProt:P0A7A7 | ||||
plsBF351A |
F351A |
Strongly reduced acyltransferase activity |
seeded from UniProt:P0A7A7 | ||||
plsBI352A |
I352A |
Reduced acyltransferase activity |
seeded from UniProt:P0A7A7 | ||||
plsBR354C |
R354C |
Reduced acyltransferase activity |
seeded from UniProt:P0A7A7 | ||||
plsBR354K |
R354K |
No effect |
seeded from UniProt:P0A7A7 | ||||
plsBE385R |
E385R |
Strongly reduced acyltransferase activity |
seeded from UniProt:P0A7A7 | ||||
plsBG386A |
G386A |
No effect |
seeded from UniProt:P0A7A7 | ||||
plsBG386L |
G386L |
Reduced acyltransferase activity |
seeded from UniProt:P0A7A7 | ||||
plsBS389A |
S389A |
No effect |
seeded from UniProt:P0A7A7 | ||||
plsBP421S |
P421S |
Reduced acyltransferase activity |
seeded from UniProt:P0A7A7 | ||||
plsB13 |
|||||||
plsB26 |
PMID:6094487 |
||||||
plsB26 |
G1045A |
Ala349Thr |
Growth Phenotype |
Glycerol-3-phosphate auxotrophs |
PMID:10074094 |
||
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Notes
Genetic Interactions
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Interactor | Interaction | Allele | Score(s) | Reference(s) | Accessions | Notes |
---|---|---|---|---|---|---|
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Notes
Genetic Resources
See Help:Gene_resources for help entering information into the Genetic Resources table.
Resource | Resource Type | Source | Notes/Reference |
---|---|---|---|
JW4001 |
Plasmid clone |
PMID:16769691 Status:Clone OK Primer 1:GCCTCCGGCTGGCCACGAATTTA Primer 2:CCaCCTTCGCCCTGCGTCGCACT | |
Kohara Phage |
PMID:3038334 | ||
Kohara Phage |
PMID:3038334 | ||
Linked marker |
est. P1 cotransduction: 67% [8] | ||
Linked marker |
est. P1 cotransduction: 8% [8] | ||
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
EcoCyc:EG10740 |
Escherichia coli str. K-12 substr. MG1655 | |
EcoGene:EG10740 |
Escherichia coli str. K-12 substr. MG1655 | |
RegulonDB:ECK120000731 |
Escherichia coli str. K-12 substr. MG1655 | |
Escherichia coli str. K-12 substr. MG1655 | ||
EchoBASE:EB0733 |
Escherichia coli str. K-12 substr. MG1655 | |
ASAP:ABE-0013232 |
Escherichia coli str. K-12 substr. MG1655 | |
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Notes
Links
Name | URL | Comments |
---|---|---|
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Product(s)
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Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Standard name |
PlsB |
---|---|
Synonyms |
glycerol-3-phosphate O-acyltransferase[1], B4041[3][1], PlsB[3][1] , ECK4033, JW4001, b4041 |
Product description |
GLYCEROL-3-P- Glycerol-3-phosphate acyltransferase[2] |
EC number (for enzymes) | |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
---|---|---|---|---|---|---|---|---|
GO:0005737 |
cytoplasm |
C |
Seeded from Riley et al 2006 [1]. |
Missing: evidence, reference | ||||
GO:0004366 |
glycerol-3-phosphate O-acyltransferase activity |
GOA:hamap |
IEA: Inferred from Electronic Annotation |
HAMAP:MF_00393 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0004366 |
glycerol-3-phosphate O-acyltransferase activity |
GOA:spec |
IEA: Inferred from Electronic Annotation |
EC:2.3.1.15 |
F |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0005886 |
plasma membrane |
GOA:hamap |
IEA: Inferred from Electronic Annotation |
HAMAP:MF_00393 |
C |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0004366 |
glycerol-3-phosphate O-acyltransferase activity |
PMID:6251087 |
IMP: Inferred from Mutant Phenotype |
F |
complete | |||
GO:0005886 |
plasma membrane |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-1003 |
C |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0005887 |
integral to plasma membrane |
PMID:6997313 |
IDA: Inferred from Direct Assay |
C |
complete | |||
GO:0008654 |
phospholipid biosynthetic process |
GOA:hamap |
IEA: Inferred from Electronic Annotation |
HAMAP:MF_00393 |
P |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0008654 |
phospholipid biosynthetic process |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
SP_KW:KW-0594 |
P |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0019898 |
extrinsic to membrane |
GO_REF:0000023 |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-9903 |
C |
Seeded from EcoCyc (v14.0) |
complete | |
GO:0006631 |
fatty acid metabolic process |
PMID:3542964 |
IMP: Inferred from Mutant Phenotype |
P |
complete | |||
GO:0008654 |
phospholipid biosynthetic process |
PMID:3294813 |
IMP: Inferred from Mutant Phenotype |
P |
complete | |||
GO:0005887 |
integral to plasma membrane |
PMID:10074094 |
IDA: Inferred from Direct Assay |
C |
complete | |||
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Partner Type | Partner | Notes | References | Evidence |
---|---|---|---|---|
Protein |
lpdA |
PMID:15690043 |
Experiment(s):EBI-884968 | |
Protein |
rho |
PMID:15690043 |
Experiment(s):EBI-884968 | |
Protein |
rplC |
PMID:15690043 |
Experiment(s):EBI-884968, EBI-891798 | |
Protein |
rplD |
PMID:15690043 |
Experiment(s):EBI-884968 | |
Protein |
rpsC |
PMID:15690043 |
Experiment(s):EBI-884968, EBI-891798 | |
Protein |
rpsD |
PMID:15690043 |
Experiment(s):EBI-884968, EBI-891798 | |
Protein |
srmB |
PMID:15690043 |
Experiment(s):EBI-884968 | |
Protein |
tufA |
PMID:15690043 |
Experiment(s):EBI-884968 | |
Protein |
rplB |
PMID:15690043 |
Experiment(s):EBI-891798 | |
Protein |
rplF |
PMID:15690043 |
Experiment(s):EBI-891798 | |
Protein |
rplI |
PMID:15690043 |
Experiment(s):EBI-891798 | |
Protein |
rpsE |
PMID:15690043 |
Experiment(s):EBI-891798 | |
Protein |
rpsH |
PMID:15690043 |
Experiment(s):EBI-891798 | |
Protein |
rpsI |
PMID:15690043 |
Experiment(s):EBI-891798 | |
Protein |
rpsJ |
PMID:15690043 |
Experiment(s):EBI-891798 | |
Protein |
rluB |
PMID:15690043 |
Experiment(s):EBI-891798 | |
Protein |
rplK |
PMID:15690043 |
Experiment(s):EBI-891798 | |
Protein |
rplL |
PMID:15690043 |
Experiment(s):EBI-891798 | |
Protein |
rplM |
PMID:15690043 |
Experiment(s):EBI-891798 | |
Protein |
rplO |
PMID:15690043 |
Experiment(s):EBI-891798 | |
Protein |
rplS |
PMID:15690043 |
Experiment(s):EBI-891798 | |
Protein |
rplV |
PMID:15690043 |
Experiment(s):EBI-891798 | |
Protein |
rplX |
PMID:15690043 |
Experiment(s):EBI-891798 | |
Protein |
rpmB |
PMID:15690043 |
Experiment(s):EBI-891798 | |
Protein |
rpmG |
PMID:15690043 |
Experiment(s):EBI-891798 | |
Protein |
rpsB |
PMID:15690043 |
Experiment(s):EBI-891798 | |
Protein |
dnaE |
PMID:16606699 |
Experiment(s):EBI-1147321 | |
Protein |
groL |
PMID:16606699 |
Experiment(s):EBI-1147321 | |
Protein |
rpsD |
PMID:19402753 |
LCMS(ID Probability):99.0 MALDI(Z-score):17.053160 | |
Protein |
rpsC |
PMID:19402753 |
LCMS(ID Probability):99.0 MALDI(Z-score):17.053160 | |
Protein |
ispA |
PMID:19402753 |
MALDI(Z-score):38.419024 | |
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Compartment | Description | Evidence | Reference/Source | Notes |
---|---|---|---|---|
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Name | |
---|---|
Sequence |
MTFCYPCRAF ALLTRGFTSF MSGWPRIYYK LLNLPLSILV KSKSIPADPA PELGLDTSRP IMYVLPYNSK ADLLTLRAQC LAHDLPDPLE PLEIDGTLLP RYVFIHGGPR VFTYYTPKEE SIKLFHDYLD LHRSNPNLDV QMVPVSVMFG RAPGREKGEV NPPLRMLNGV QKFFAVLWLG RDSFVRFSPS VSLRRMADEH GTDKTIAQKL ARVARMHFAR QRLAAVGPRL PARQDLFNKL LASRAIAKAV EDEARSKKIS HEKAQQNAIA LMEEIAANFS YEMIRLTDRI LGFTWNRLYQ GINVHNAERV RQLAHDGHEL VYVPCHRSHM DYLLLSYVLY HQGLVPPHIA AGINLNFWPA GPIFRRLGAF FIRRTFKGNK LYSTVFREYL GELFSRGYSV EYFVEGGRSR TGRLLDPKTG TLSMTIQAML RGGTRPITLI PIYIGYEHVM EVGTYAKELR GATKEKESLP QMLRGLSKLR NLGQGYVNFG EPMPLMTYLN QHVPDWRESI DPIEAVRPAW LTPTVNNIAA DLMVRINNAG AANAMNLCCT ALLASRQRSL TREQLTEQLN CYLDLMRNVP YSTDSTVPSA SASELIDHAL QMNKFEVEKD TIGDIIILPR EQAVLMTYYR NNIAHMLVLP SLMAAIVTQH RHISRDVLME HVNVLYPMLK AELFLRWDRD ELPDVIDALA NEMQRQGLIT LQDDELHINP AHSRTLQLLA AGARETLQRY AITFWLLSAN PSINRGTLEK ESRTVAQRLS VLHGINAPEF FDKAVFSSLV LTLRDEGYIS DSGDAEPAET MKVYQLLAEL ITSDVRLTIE SATQGEG |
Length |
827 |
Mol. Wt |
93.699 kDa |
pI |
8.7 (calculated) |
Extinction coefficient |
91,680 - 92,555 (calc based on 32 Y, 8 W, and 7 C residues) |
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Domains/Motifs/Modification Sites
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
Structure
| </protect>
Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Resource type | Source | Notes/Reference |
---|---|---|
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
ASAP:ABE-0013232 |
Escherichia coli str. K-12 substr. MG1655 | |
Escherichia coli str. K-12 substr. MG1655 | ||
EcoCyc:EG10740 |
Escherichia coli str. K-12 substr. MG1655 | |
EcoGene:EG10740 |
Escherichia coli str. K-12 substr. MG1655 | |
Escherichia coli str. K-12 substr. MG1655 | ||
RegulonDB:ECK120000731 |
Escherichia coli str. K-12 substr. MG1655 | |
EchoBASE:EB0733 |
Escherichia coli str. K-12 substr. MG1655 | |
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Notes
Links
Name | URL | Comments |
---|---|---|
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Expression
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Overview
This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.
Cellular Levels
Molecule | Organism or Strain | Value | Units | Experimental Conditions | Assay used | Notes | Reference(s) |
---|---|---|---|---|---|---|---|
Protein |
E. coli K-12 MC4100 |
1.44E+02 |
molecules/cell |
|
emPAI |
PMID:18304323 | |
Protein |
Ecoli K-12 |
41.199+/-0.29 |
Molecules/cell |
|
Single Molecule Fluorescence |
PMID:20671182 | |
mRNA |
Ecoli K-12 |
0.037144036 |
Molecules/cell |
|
by RNA_Seq |
PMID:20671182 | |
Protein |
E. coli K-12 MG1655 |
1896 |
molecules/cell/generation |
|
Ribosome Profiling |
PMID: 24766808 | |
Protein |
E. coli K-12 MG1655 |
445 |
molecules/cell/generation |
|
Ribosome Profiling |
PMID: 24766808 | |
Protein |
E. coli K-12 MG1655 |
739 |
molecules/cell/generation |
|
Ribosome Profiling |
PMID: 24766808 | |
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Notes
Transcription and Transcriptional Regulation
<protect>
See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.
|
</protect>
Notes
This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.
Translation and Regulation of Translation
<protect><gbrowseImage>
name=NC_000913:4254469..4254509
source=MG1655
flip=1
type=Gene+DNA_+Protein
preset=Nterminus
</gbrowseImage>
This picture shows the sequence around the N-terminus.
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Notes
This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.
Turnover and Regulation of Turnover
</protect>
Notes
This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.
Experimental
<protect>
Mutations Affecting Expression
See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.
Allele Name | Mutation | Phenotype | Reference |
---|---|---|---|
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Expression Studies
See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.
Type | Reference | Notes |
---|---|---|
microarray |
NCBI GEO profiles for plsB | |
microarray |
Summary of data for plsB from multiple microarray studies | |
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Expression Resources
See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.
Resource Name | Resource Type | Description | Source | Notes |
---|---|---|---|---|
GFP Fusion |
Intergenic region (4254034..4254228) fused to gfpmut2. |
GFP fusion described in Zaslaver, et al. | ||
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Notes
Accessions Related to plsB Expression
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
EcoCyc:EG10740 |
Escherichia coli str. K-12 substr. MG1655 | |
EchoBASE:EB0733 |
Escherichia coli str. K-12 substr. MG1655 | |
EcoGene:EG10740 |
Escherichia coli str. K-12 substr. MG1655 | |
RegulonDB:ECK120000731 |
Escherichia coli str. K-12 substr. MG1655 | |
ASAP:ABE-0013232 |
Escherichia coli str. K-12 substr. MG1655 | |
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Notes
Links
Name | URL | Comments |
---|---|---|
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Evolution
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Homologs in Other Organisms
See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.
Organism | Homologs (Statistics) | Comments |
---|---|---|
Anopheles gambiae |
|
From Inparanoid:20070104 |
Caenorhabditis briggsae |
|
From Inparanoid:20070104 |
Caenorhabditis elegans |
|
From Inparanoid:20070104 |
Canis familiaris |
|
From Inparanoid:20070104 |
Ciona intestinalis |
|
From Inparanoid:20070104 |
Drosophila melanogaster |
|
From Inparanoid:20070104 |
Drosophila pseudoobscura |
|
From Inparanoid:20070104 |
Gallus gallus |
|
From Inparanoid:20070104 |
Homo sapiens |
|
From Inparanoid:20070104 |
Macaca mulatta |
|
From Inparanoid:20070104 |
Mus musculus |
|
From Inparanoid:20070104 |
Pan troglodytes |
|
From Inparanoid:20070104 |
Rattus norvegicus |
|
From Inparanoid:20070104 |
Takifugu rubripes |
|
From Inparanoid:20070104 |
Tetraodon nigroviridis |
|
From Inparanoid:20070104 |
Xenopus tropicalis |
|
From Inparanoid:20070104 |
Shigella flexneri |
PLSB |
From SHIGELLACYC |
E. coli O157 |
PLSB |
From ECOO157CYC |
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Do-It-Yourself Web Tools
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Notes
Families
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
EcoCyc:EG10740 |
Escherichia coli str. K-12 substr. MG1655 | |
EcoGene:EG10740 |
Escherichia coli str. K-12 substr. MG1655 | |
RegulonDB:ECK120000731 |
Escherichia coli str. K-12 substr. MG1655 | |
EchoBASE:EB0733 |
Escherichia coli str. K-12 substr. MG1655 | |
ASAP:ABE-0013232 |
Escherichia coli str. K-12 substr. MG1655 | |
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Notes
Links
Name | URL | Comments |
---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 4.2 Heath, RJ & Rock, CO (1999) A missense mutation accounts for the defect in the glycerol-3-phosphate acyltransferase expressed in the plsB26 mutant. J. Bacteriol. 181 1944-6 PubMed
- ↑ Bell, RM (1974) Mutants of Escherichia coli defective in membrane phospholipid synthesis: macromolecular synthesis in an sn-glycerol 3-phosphate acyltransferase Km mutant. J. Bacteriol. 117 1065-76 PubMed
- ↑ Ray, TK & Cronan, JE Jr (1987) Acylation of glycerol 3-phosphate is the sole pathway of de novo phospholipid synthesis in Escherichia coli. J. Bacteriol. 169 2896-8 PubMed
- ↑ 7.0 7.1 CGSC: The Coli Genetics Stock Center
- ↑ 8.0 8.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
- ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed
Categories
- Genes in OpenBioSystems with Promoter Fusions
- Genes with homologs in Anopheles gambiae
- Genes with homologs in Caenorhabditis briggsae
- Genes with homologs in Caenorhabditis elegans
- Genes with homologs in Canis familiaris
- Genes with homologs in Ciona intestinalis
- Genes with homologs in Drosophila melanogaster
- Genes with homologs in Drosophila pseudoobscura
- Genes with homologs in Gallus gallus
- Genes with homologs in Homo sapiens
- Genes with homologs in Macaca mulatta
- Genes with homologs in Mus musculus
- Genes with homologs in Pan troglodytes
- Genes with homologs in Rattus norvegicus
- Genes with homologs in Takifugu rubripes
- Genes with homologs in Tetraodon nigroviridis
- Genes with homologs in Xenopus tropicalis
- Genes with homologs in Shigella flexneri
- Genes with homologs in E. coli O157