ndk:On One Page

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

<protect>

Standard Name

ndk

Gene Synonym(s)

ECK2514, b2518, JW2502[1], JW2502

Product Desc.

Ndk[2][3];

Component of NUCLEOSIDE-DIP-KIN-CPLX[2]

Nucleoside diphosphate kinase[4]

Product Synonyms(s)

multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase[1], B2518[2][1], Ndk[2][1] , ECK2514, JW2502, b2518

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ndk[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

edit table

</protect> See Help:Quickview for help with entering information in the Quickview table. <protect></protect>

Notes

[back to top]


Binds TrxA (Kumar, 2004). UDG and Ndk form a complex (Goswami, 2006).[4]



Gene

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css> <protect>

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ndk

Mnemonic

Nucleoside diphosphate kinase

Synonyms

ECK2514, b2518, JW2502[1], JW2502

edit table

</protect>

Notes

Location(s) and DNA Sequence

[back to top]


<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

56.95 minutes 

MG1655: 2642886..2642455
<gbrowseImage> name=NC_000913:2642455..2642886 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2565683..2565252
<gbrowseImage> name=NC_012967:2565252..2565683 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2528260..2528691
<gbrowseImage> name=NC_012759:2528260..2528691 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2643520..2643089
<gbrowseImage> name=NC_007779:2643089..2643520 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 2734651..2734220
<gbrowseImage> name=NC_010473:2734220..2734651 source=DH10B preset=GeneLocation </gbrowseImage>

edit table

</protect>

Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

2642458

Edman degradation

PMID:1323446


edit table

<protect></protect>

Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

Δndk (Keio:JW2502)

deletion

deletion

PMID:16738554

Shigen

ndk::Tn5KAN-2 (FB20840)

Insertion at nt 234 in Minus orientation

PMID:15262929

E. coli Genome Project:FB20840

does not contain pKD46

ndk::Tn5KAN-2 (FB20841)

Insertion at nt 234 in Minus orientation

PMID:15262929

E. coli Genome Project:FB20841

contains pKD46

edit table

<protect></protect>

Notes

Genetic Interactions

[back to top]


<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
edit table

</protect>

Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2502

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGCTATTGAACGTACTTTTTC

Primer 2:CCACGGGTGCGCGGGCACACTTC

2D5

Kohara Phage

Genobase

PMID:3038334

7F8

Kohara Phage

Genobase

PMID:3038334

purC80::Tn10

Linked marker

CAG18470 = CGSC7413[5]

est. P1 cotransduction: 11% [6]

zfh-208::Tn10

Linked marker

CAG18481 = CGSC7417[5]

est. P1 cotransduction: 47% [6]
Synonyms:zff-208::Tn10

edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10650

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10650

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000643

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945611

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0644

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008291

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]



Product(s)

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Ndk

Synonyms

multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase[1], B2518[2][1], Ndk[2][1] , ECK2514, JW2502, b2518

Product description

Ndk[2][3];

Component of NUCLEOSIDE-DIP-KIN-CPLX[2]

Nucleoside diphosphate kinase[4]

EC number (for enzymes)
edit table

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0000287

magnesium ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0460

F

Seeded from EcoCyc (v14.0)

complete

GO:0004550

nucleoside diphosphate kinase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00451

F

Seeded from EcoCyc (v14.0)

complete

GO:0004550

nucleoside diphosphate kinase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001564

F

Seeded from EcoCyc (v14.0)

complete

GO:0004550

nucleoside diphosphate kinase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.7.4.6

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00451

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001564

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00451

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006183

GTP biosynthetic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00451

P

Seeded from EcoCyc (v14.0)

complete

GO:0006183

GTP biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001564

P

Seeded from EcoCyc (v14.0)

complete

GO:0006228

UTP biosynthetic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00451

P

Seeded from EcoCyc (v14.0)

complete

GO:0006228

UTP biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001564

P

Seeded from EcoCyc (v14.0)

complete

GO:0006241

CTP biosynthetic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00451

P

Seeded from EcoCyc (v14.0)

complete

GO:0006241

CTP biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001564

P

Seeded from EcoCyc (v14.0)

complete

GO:0009117

nucleotide metabolic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0546

P

Seeded from EcoCyc (v14.0)

complete

GO:0016301

kinase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0418

F

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of NUCLEOSIDE-DIP-KIN-CPLX

could be indirect

Protein

dnaK

PMID:15690043

Experiment(s):EBI-889234

Protein

dnaN

PMID:15690043

Experiment(s):EBI-889234

Protein

ygfA

PMID:15690043

Experiment(s):EBI-889234, EBI-879866, EBI-884764

Protein

dnaN

PMID:19402753

MALDI(Z-score):35.586418

edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MAIERTFSII KPNAVAKNVI GNIFARFEAA GFKIVGTKML HLTVEQARGF YAEHDGKPFF
DGLVEFMTSG PIVVSVLEGE NAVQRHRDLL GATNPANALA GTLRADYADS LTENGTHGSD
SVESAAREIA YFFGEGEVCP RTR
Length

143

Mol. Wt

15.463 kDa

pI

5.9 (calculated)

Extinction coefficient

4,470 - 4,595 (calc based on 3 Y, 0 W, and 1 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0A763

Modification Site

93

phosphorylation site at T93

probability greater than 75%

PMID:17938405

Domain

4..138

PF00334 Nucleoside diphosphate kinase

PMID:19920124

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ndk taxon=562,83333 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130443

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945611

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008291

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A763

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10650

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10650

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945611

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000643

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0644

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]




Expression

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

[back to top]


See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

5.23E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

178.237+/-0.688

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.02991+/-0.00666

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

0.339907193

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

44876

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

9782

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

16136

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

edit table

Notes

Transcription and Transcriptional Regulation

[back to top]


<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

ndk

edit table
Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

[back to top]


<protect><gbrowseImage> name=NC_000913:2642866..2642906 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

[back to top]


<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
edit table


Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2518 (EcoliWiki Page)

NCBI GEO profiles for ndk

microarray

GenExpDB:b2518 (EcoliWiki Page)

Summary of data for ndk from multiple microarray studies

edit table


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (2642801..2643068) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ20; Well:D6[7]

edit table

<protect></protect>

Notes

Accessions Related to ndk Expression

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10650

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0644

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2518

EcoGene

EcoGene:EG10650

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000643

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008291

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]



Evolution

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000011253 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000012462 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G09320 (score: 1.000; bootstrap: 88%)
  • AT5G63310 (score: 0.314)
  • AT4G11010 (score: 0.305)
  • AT4G23900 (score: 0.300)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000022012 (score: 1.000; bootstrap: 96%)
  • ENSBTAP00000006104 (score: 0.450)
  • ENSBTAP00000021907 (score: 0.427)
  • ENSBTAP00000022066 (score: 0.307)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00025328 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009119 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000023323 (score: 1.000; bootstrap: 88%)
  • ENSCAFP00000025499 (score: 1.000; bootstrap: 88%)
  • ENSCAFP00000006112 (score: 0.866)
  • ENSCAFP00000000055 (score: 0.778)
  • ENSCAFP00000023696 (score: 0.763)
  • ENSCAFP00000028829 (score: 0.356)
  • ENSCAFP00000029117 (score: 0.314)
  • ENSCAFP00000006446 (score: 0.294)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000002194 (score: 1.000; bootstrap: 94%)
  • ENSCINP00000011619 (score: 0.543)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-000210-34 (score: 1.000; bootstrap: 93%)
  • ZDB-CDNA-040801-184 (score: 1.000; bootstrap: 92%)
  • ZDB-CDNA-040425-581 (score: 0.454)
  • ZDB-GENE-000210-32 (score: 0.436)
  • ZDB-CDNA-040425-1577 (score: 0.399)
  • ZDB-GENE-030131-7656 (score: 0.399)
  • ZDB-CDNA-040425-567 (score: 0.376)
  • ZDB-GENE-000210-33 (score: 0.376)
  • ZDB-CDNA-040425-1975 (score: 0.307)
  • ZDB-GENE-040426-1043 (score: 0.307)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0185051 (score: 1.000; bootstrap: 99%)
  • DDB0217316 (score: 1.000; bootstrap: 99%)
  • DDB0214817 (score: 0.256)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0000150 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18797-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000003531 (score: 1.000; bootstrap: 72%)
  • ENSGALP00000034078 (score: 0.440)
  • ENSGALP00000011810 (score: 0.393)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000219302 (score: 1.000; bootstrap: 95%)
  • ENSP00000337060 (score: 0.445)
  • ENSP00000312446 (score: 0.423)
  • ENSP00000219479 (score: 0.336)
  • ENSP00000242630 (score: 0.273)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000002594 (score: 1.000; bootstrap: 90%)
  • ENSMMUP00000005145 (score: 0.301)
  • ENSMMUP00000000824 (score: 0.268)
  • ENSMMUP00000025232 (score: 0.207)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000020158 (score: 1.000; bootstrap: 94%)
  • ENSMODP00000015750 (score: 0.458)
  • ENSMODP00000020808 (score: 0.369)
  • ENSMODP00000015743 (score: 0.360)

From Inparanoid:20070104

Mus musculus

  • MGI:1930182 (score: 1.000; bootstrap: 93%)
  • MGI:97355 (score: 0.406)
  • MGI:97356 (score: 0.397)
  • MGI:3648428 (score: 0.374)
  • MGI:1931148 (score: 0.338)

From Inparanoid:20070104

Oryza gramene

  • Q9AY50 (score: 1.000; bootstrap: 89%)
  • Q7XC37 (score: 1.000; bootstrap: 88%)
  • Q9LKM0 (score: 0.817)
  • P93554 (score: 0.806)
  • Q6ZHK3 (score: 0.706)
  • Q07661 (score: 0.706)
  • Q6DQV1 (score: 0.700)
  • Q762A0 (score: 0.456)
  • Q5TKF4 (score: 0.356)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000015997 (score: 1.000; bootstrap: 94%)
  • ENSPTRP00000009382 (score: 0.478)
  • ENSPTRP00000015998 (score: 0.098)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000021650 (score: 1.000; bootstrap: 94%)
  • ENSRNOP00000003611 (score: 1.000; bootstrap: 92%)
  • ENSRNOP00000003658 (score: 0.854)
  • ENSRNOP00000001641 (score: 0.693)
  • ENSRNOP00000039639 (score: 0.609)
  • ENSRNOP00000009166 (score: 0.573)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YKL067W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC8067 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000150656 (score: 1.000; bootstrap: 93%)
  • NEWSINFRUP00000159513 (score: 1.000; bootstrap: 92%)
  • NEWSINFRUP00000129296 (score: 0.375)
  • NEWSINFRUP00000158595 (score: 0.304)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00004660001 (score: 1.000; bootstrap: 92%)
  • GSTENP00021805001 (score: 0.491)
  • GSTENP00035067001 (score: 0.303)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000024764 (score: 1.000; bootstrap: 72%)
  • ENSXETP00000022726 (score: 0.369)

From Inparanoid:20070104

Shigella flexneri

NDK

From SHIGELLACYC

E. coli O157

NDK

From ECOO157CYC

edit table


Do-It-Yourself Web Tools

<protect></protect>

Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00334 Nucleoside diphosphate kinase

Panther (EcoliWiki Page)

PTHR11349:SF26

Superfamily (EcoliWiki Page)

SUPERFAMILY:54919

EcoCyc

EcoCyc:EG10650

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10650

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000643

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0644

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008291

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ndk:On_One_Page&oldid=220912"