mrcA:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

mrcA

Gene Synonym(s)

ECK3383, b3396, JW3359, ponA[1], ponA

Product Desc.

peptidoglycan synthetase; penicillin-binding protein 1A[2][3]

Murein polymerase, PBP1A; bifunctional murein transglycosylase and transpeptidase; penicillin-binding protein 1A; dimeric[4]

Product Synonyms(s)

fused penicillin-binding protein 1a: murein transglycosylase[1], murein transpeptidase[1], B3396[2][1], PonA[2][1], MrcA[2][1], PBP1A[2][1] , ECK3383, JW3359, ponA, b3396

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): mrcA[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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The N-terminal transglycosylase activity polymerizes the glycan backbone and is penicillin-insensitive. The C-terminal transpeptidase activity crosslinks the muramic peptides and is penicillin-sensitive. Several phenotypes were associated with an mrcA deletion strain that inadvertantly deleted two neighboring genes, nudE(yrfE) and yrfF. One or both of these other genes turned out to be responsible for the observed mrcA-associated phenotypes. Murein polymerase is an essential function satisfied by either MrcA or MrcB. MrcA contains a PDZ domain involved in substrate recognition. MrcA is a membrane-bound periplasmic enzyme that has an uncleaved signal anchor.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

mrcA

Mnemonic

Murein cluster c

Synonyms

ECK3383, b3396, JW3359, ponA[1], ponA

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

75.89 minutes, 75.89 minutes 

MG1655: 3520893..3523445
<gbrowseImage> name=NC_000913:3520893..3523445 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3451553..3454105
<gbrowseImage> name=NC_012967:3451553..3454105 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3408050..3410602
<gbrowseImage> name=NC_012759:3408050..3410602 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4117545..4114993
<gbrowseImage> name=NC_007779:4114993..4117545 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3618638..3621190
<gbrowseImage> name=NC_010473:3618638..3621190 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔmrcA (Keio:JW3359)

deletion

deletion

PMID:16738554

Shigen
CGSC10505[5]

mrcA::Tn5KAN-I-SceI (FB21157)

Insertion at nt 1872 in Minus orientation

PMID:15262929

E. coli Genome Project:FB21157

does not contain pKD46

ΔmrcA::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938

ΔmrcA::kan

deletion

Biolog:respiration

unable to respire Bromosuccinate

PMID:16095938

mrcA980

CGSC:8782

ΔmrcA731::kan

PMID:16738554

CGSC:101946


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3359

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAAGTTCGTAAAGTATTTTTT

Primer 2:CCGAACAATTCCTGTGCCTCGCC

1C9

Kohara Phage

Genobase

PMID:3038334

4D4

Kohara Phage

Genobase

PMID:3038334

zhf-3084::Tn10

Linked marker

CAG18456 = CGSC7576[5]

est. P1 cotransduction: 52% [6]
Synonyms:zhe-3084::Tn10nnnCAG18456 also carries cysG0 (CGSC).

glgP721::Tn10

Linked marker

CAG18638 = CGSC7451[5]

est. P1 cotransduction: 16% [6]
Synonyms:zhg-3086::Tn10, zhh-21::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10748

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10748

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000739

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947907

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0741

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011082

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

MrcA

Synonyms

fused penicillin-binding protein 1a: murein transglycosylase[1], murein transpeptidase[1], B3396[2][1], PonA[2][1], MrcA[2][1], PBP1A[2][1] , ECK3383, JW3359, ponA, b3396

Product description

peptidoglycan synthetase; penicillin-binding protein 1A[2][3]

Murein polymerase, PBP1A; bifunctional murein transglycosylase and transpeptidase; penicillin-binding protein 1A; dimeric[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0005887

integral to plasma membrane

PMID:319999

IDA: Inferred from Direct Assay

C

Seeded from Riley et al 2006 [1].

complete

GO:0008955

peptidoglycan glycosyltransferase activity

PMID:7006606

IDA: Inferred from Direct Assay

F

complete

GO:0008658

penicillin binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001460

F

Seeded from EcoCyc (v14.0)

complete

GO:0009002

serine-type D-Ala-D-Ala carboxypeptidase activity

PMID:7006606

IDA: Inferred from Direct Assay

F

complete

GO:0009252

peptidoglycan biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001264

P

Seeded from EcoCyc (v14.0)

complete

GO:0009252

peptidoglycan biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011816

P

Seeded from EcoCyc (v14.0)

complete

GO:0009252

peptidoglycan biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0573

P

Seeded from EcoCyc (v14.0)

complete

GO:0009274

peptidoglycan-based cell wall

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001264

C

Seeded from EcoCyc (v14.0)

complete

GO:0016763

transferase activity, transferring pentosyl groups

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011816

F

Seeded from EcoCyc (v14.0)

complete

GO:0046677

response to antibiotic

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011816

P

Seeded from EcoCyc (v14.0)

complete

GO:0046677

response to antibiotic

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0046

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

hflB

PMID:16606699

Experiment(s):EBI-1145791

Protein

alaS

PMID:16606699

Experiment(s):EBI-1145791

Protein

rpsP

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsP

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplP

PMID:19402753

LCMS(ID Probability):99.6

Protein

hupA

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplA

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplK

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplS

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsM

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsS

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsD

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplO

PMID:19402753

LCMS(ID Probability):99.6

Protein

groS

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplR

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsK

PMID:19402753

LCMS(ID Probability):99.6

Protein

eno

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):14.416243

Protein

rplI

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):5.817502

Protein

rplB

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsA

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpmC

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplX

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753

LCMS(ID Probability):99.6

Protein

ugpB

PMID:19402753

LCMS(ID Probability):99.3 MALDI(Z-score):8.104456

Protein

ahpC

PMID:19402753

LCMS(ID Probability):99.6

Protein

tufB

PMID:19402753

MALDI(Z-score):20.804233

Protein

gadB

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):11.890041

Protein

rplJ

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsJ

PMID:19402753

LCMS(ID Probability):99.6

Protein

gapA

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):26.091416

Protein

rplE

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):2.650387

Protein

fusA

PMID:19402753

LCMS(ID Probability):99.6

Protein

hns

PMID:19402753

LCMS(ID Probability):99.5

Protein

yfiD

PMID:19402753

LCMS(ID Probability):99.6

Protein

dps

PMID:19402753

LCMS(ID Probability):99.6

Protein

tig

PMID:19402753

LCMS(ID Probability):99.6

Protein

pflB

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):23.505319

Protein

hdeB

PMID:19402753

LCMS(ID Probability):99.4

Protein

gnd

PMID:19402753

LCMS(ID Probability):99.6

Protein

glmS

PMID:19402753

LCMS(ID Probability):98.9

Protein

fur

PMID:19402753

LCMS(ID Probability):99.6

Protein

yccJ

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplY

PMID:19402753

LCMS(ID Probability):99.6

Protein

adk

PMID:19402753

LCMS(ID Probability):99.6

Protein

pstS

PMID:19402753

MALDI(Z-score):19.273541

Protein

elaB

PMID:19402753

LCMS(ID Probability):99.6

Protein

katG

PMID:19402753

LCMS(ID Probability):99.2

Protein

ribE

PMID:19402753

LCMS(ID Probability):99.6

Protein

glyA

PMID:19402753

LCMS(ID Probability):99.6

Protein

clpB

PMID:19402753

LCMS(ID Probability):99.6

Protein

pgm

PMID:19402753

LCMS(ID Probability):99.6

Protein

dhaM

PMID:19402753

LCMS(ID Probability):99.2

Protein

talB

PMID:19402753

LCMS(ID Probability):99.5

Protein

aspS

PMID:19402753

LCMS(ID Probability):99.6

Protein

ihfA

PMID:19402753

LCMS(ID Probability):99.6

Protein

luxS

PMID:19402753

LCMS(ID Probability):99.6

Protein

fkpA

PMID:19402753

LCMS(ID Probability):98.6

Protein

manA

PMID:19402753

LCMS(ID Probability):99.0

Protein

cspC

PMID:19402753

LCMS(ID Probability):99.6

Protein

mdh

PMID:19402753

LCMS(ID Probability):99.6

Protein

uspD

PMID:19402753

LCMS(ID Probability):99.6

Protein

pgk

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):2.192678

Protein

tsf

PMID:19402753

LCMS(ID Probability):99.6

Protein

wrbA

PMID:19402753

MALDI(Z-score):21.134951

Protein

yqjD

PMID:19402753

LCMS(ID Probability):99.6

Protein

ybaB

PMID:19402753

LCMS(ID Probability):99.6

Protein

efp

PMID:19402753

LCMS(ID Probability):99.5

Protein

greA

PMID:19402753

LCMS(ID Probability):99.6

Protein

fabG

PMID:19402753

LCMS(ID Probability):99.5

Protein

yfcZ

PMID:19402753

LCMS(ID Probability):99.6

Protein

lysU

PMID:19402753

LCMS(ID Probability):98.7 MALDI(Z-score):2.580915

Protein

ansB

PMID:19402753

LCMS(ID Probability):99.5

Protein

rfbB

PMID:19402753

LCMS(ID Probability):99.6

Protein

deoB

PMID:19402753

LCMS(ID Probability):99.0

Protein

osmC

PMID:19402753

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

Inner Membrane

PMID:3882429, PMID:3510188

EchoLocation:mrcA

plasma membrane


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKLNGKFPVK FVKYFLILAV CCILLGAGSI YGLYRYIEPQ LPDVATLKDV RLQIPMQIYS
ADGELIAQYG EKRRIPVTLD QIPPEMVKAF IATEDSRFYE HHGVDPVGIF RAASVALFSG
HASQGASTIT QQLARNFFLS PERTLMRKIK EVFLAIRIEQ LLTKDEILEL YLNKIYLGYR
AYGVGAAAQV YFGKTVDQLT LNEMAVIAGL PKAPSTFNPL YSMDRAVARR NVVLSRMLDE
GYITQQQFDQ TRTEAINANY HAPEIAFSAP YLSEMVRQEM YNRYGESAYE DGYRIYTTIT
RKVQQAAQQA VRNNVLDYDM RHGYRGPANV LWKVGESAWD NNKITDTLKA LPTYGPLLPA
AVTSANPQQA TAMLADGSTV ALSMEGVRWA RPYRSDTQQG PTPRKVTDVL QTGQQIWVRQ
VGDAWWLAQV PEVNSALVSI NPQNGAVMAL VGGFDFNQSK FNRATQALRQ VGSNIKPFLY
TAAMDKGLTL ASMLNDVPIS RWDASAGSDW QPKNSPPQYA GPIRLRQGLG QSKNVVMVRA
MRAMGVDYAA EYLQRFGFPA QNIVHTESLA LGSASFTPMQ VARGYAVMAN GGFLVDPWFI
SKIENDQGGV IFEAKPKVAC PECDIPVIYG DTQKSNVLEN NDVEDVAISR EQQNVSVPMP
QLEQANQALV AKTGAQEYAP HVINTPLAFL IKSALNTNIF GEPGWQGTGW RAGRDLQRRD
IGGKTGTTNS SKDAWFSGYG PGVVTSVWIG FDDHRRNLGH TTASGAIKDQ ISGYEGGAKS
AQPAWDAYMK AVLEGVPEQP LTPPPGIVTV NIDRSTGQLA NGGNSREEYF IEGTQPTQQA
VHEVGTTIID NGEAQELF
Length

858

Mol. Wt

94.52 kDa

pI

6.9 (calculated)

Extinction coefficient

130,640 - 131,140 (calc based on 36 Y, 14 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

427..673

PF00905 Penicillin binding protein transpeptidase domain

PMID:19920124

Domain

54..230

PF00912 Transglycosylase

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=mrcA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:162135911

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947907

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011082

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P02918

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10748

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10748

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947907

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000739

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0741

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

8.04E+01

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

1.429+/-0.051

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.02096395

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

554

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

116

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

135

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

mrcA

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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3520873..3520913 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3396 (EcoliWiki Page)

NCBI GEO profiles for mrcA

microarray

GenExpDB:b3396 (EcoliWiki Page)

Summary of data for mrcA from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to mrcA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10748

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0741

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3396

EcoGene

EcoGene:EG10748

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000739

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011082

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Shigella flexneri

MRCA

From SHIGELLACYC

E. coli O157

MRCA

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00905 Penicillin binding protein transpeptidase domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:56601

Pfam (EcoliWiki Page)

PF00912 Transglycosylase

EcoCyc

EcoCyc:EG10748

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10748

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000739

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0741

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011082

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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