lpd:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

lpd

Gene Synonym(s)

ECK0115, b0116, JW0112, dhl, lpdA[1], lpdA

Product Desc.

E3[2][3];

Component of E3-CPLX[2]; lipoamide dehydrogenase[3]; 2-oxoglutarate dehydrogenase complex[2][3]; gcv system[2][3]; pyruvate dehydrogenase multienzyme complex[2][3]

Lipoamide dehydrogenase, NADH-dependent; E3 component of pyruvate and 2-oxoglutarate dehydrogenase complexes; also functions as glycine cleavage system L protein; binds Zn(II)[4]

Product Synonyms(s)

lipoamide dehydrogenase, E3 component is part of three enzyme complexes[1], B0116[2][1], Lpd[2][1], Dhl[2][1], LpdA[2][1] , dhl, ECK0115, JW0112, lpdA, b0116

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): lpdA[2], pdhR-aceEF-lpdA[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Holoenzyme is AceE(24)+AceF(24)+Lpd(12). HT_Cmplx3_Cyt: AceF+Lpd.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

lpd

Mnemonic

Lipoamide dehydrogenase

Synonyms

ECK0115, b0116, JW0112, dhl, lpdA[1], lpdA

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

2.76 minutes 

MG1655: 127912..129336
<gbrowseImage> name=NC_000913:127912..129336 source=MG1655 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 127911..129335
<gbrowseImage> name=NC_012759:127911..129335 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 127912..129336
<gbrowseImage> name=NC_007779:127912..129336 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 102016..103440
<gbrowseImage> name=NC_010473:102016..103440 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

127915

Edman degradation

PMID:6352260
PMID:9298646


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

lpd(del) (Keio:JW0112)

deletion

deletion

PMID:16738554

Shigen

CGSC8394[5]

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire Dextrin

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire D-Galactose

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire b-Methyl-D-glucoside

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire DL-a-Glycerol

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire D-Galactoniate

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire D-Galacturonate

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire D-Glucuronate

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire a-Hydroxybutyrate

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire a-Ketobutyrate

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire a-Ketoglutarate

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire DL-Lactate

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire Succinate

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire Bromosuccinate

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire Glucuronamide

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire L-Alanine

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire L-Alanyl-glycine

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire L-Asparagine

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire L-Aspartate

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire Glycyl-L-aspartate

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire D-Serine

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire L-Serine

PMID:16095938

lpdA(del)::kan

deletion

Biolog:respiration

unable to respire Uridine

PMID:16095938

Mutation in lpd allele of strain: SE2377, SE2383, SE2384.

C->T at position 964

H322Y

Growth Phenotype

Reduces sensitivity of PDH to NADH inhibition during anaerobic growth, thereby allowing this enzyme to catalyze ethanol production by fermentation.

PMID:18375566

Mutation in lpd allele of strain: SE2378, SE2382, SE2385.

G->A at position 1060

E354K

Growth Phenotype

Reduces sensitivity of PDH to NADH inhibition during anaerobic growth, thereby allowing this enzyme to catalyze ethanol production by fermentation.

PMID:18375566

lpd-1

CGSC:6520

lpd-10

CGSC:6556

lpd-734(del)::kan

PMID:16738554

CGSC:101684


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0112

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAGTACTGAAATCAAAACTCA

Primer 2:CCCTTCTTCTTCGCTTTCGGGTT

4D12

Kohara Phage

Genobase

PMID:3038334

4E11

Kohara Phage

Genobase

PMID:3038334

leuO3051::Tn10

Linked marker

CAG12095 = CGSC7324[5]

est. P1 cotransduction: 14% [6]
Synonyms:zab-3051::Tn10 nnnThe start of leuO was reannotated by Riley et al. (2006).

zad-220::Tn10

Linked marker

CAG12025 = CGSC7326[5]

est. P1 cotransduction: 47% [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10543

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10543

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000536

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:944854

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0538

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000404

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Lpd

Synonyms

lipoamide dehydrogenase, E3 component is part of three enzyme complexes[1], B0116[2][1], Lpd[2][1], Dhl[2][1], LpdA[2][1] , dhl, ECK0115, JW0112, lpdA, b0116

Product description

E3[2][3];

Component of E3-CPLX[2]; lipoamide dehydrogenase[3]; 2-oxoglutarate dehydrogenase complex[2][3]; gcv system[2][3]; pyruvate dehydrogenase multienzyme complex[2][3]

Lipoamide dehydrogenase, NADH-dependent; E3 component of pyruvate and 2-oxoglutarate dehydrogenase complexes; also functions as glycine cleavage system L protein; binds Zn(II)[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0004148

dihydrolipoyl dehydrogenase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006258

F

Seeded from EcoCyc (v14.0)

complete

GO:0004148

dihydrolipoyl dehydrogenase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.8.1.4

F

Seeded from EcoCyc (v14.0)

complete

GO:0005829

cytosol

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0006096

glycolysis

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0324

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0019898

extrinsic to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9903

C

Seeded from EcoCyc (v14.0)

complete

GO:0045454

cell redox homeostasis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004099

P

Seeded from EcoCyc (v14.0)

complete

GO:0050660

FAD binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000815

F

Seeded from EcoCyc (v14.0)

complete

GO:0050660

FAD binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001327

F

Seeded from EcoCyc (v14.0)

complete

GO:0050660

FAD binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004099

F

Seeded from EcoCyc (v14.0)

complete

GO:0050660

FAD binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006258

F

Seeded from EcoCyc (v14.0)

complete

GO:0050660

FAD binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016156

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000815

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001327

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004099

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006258

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016156

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

GO:0004148

dihydrolipoyl dehydrogenase activity

PMID:3066354

IDA: Inferred from Direct Assay

F

complete

GO:0055114

oxidation reduction

PMID:3066354

IDA: Inferred from Direct Assay

P

complete

GO:0006103

2-oxoglutarate metabolic process

PMID:4197899

IMP: Inferred from Mutant Phenotype

P

complete

GO:0008270

zinc ion binding

PMID:11985624

IDA: Inferred from Direct Assay

F

complete

GO:0006090

pyruvate metabolic process

PMID:4197899

IMP: Inferred from Mutant Phenotype

P

complete

GO:0006103

2-oxoglutarate metabolic process

PMID:6311808

IGI: Inferred from Genetic Interaction

EcoliWiki:sucA|EcoliWiki:sucB

P

complete

GO:0006090

pyruvate metabolic process

PMID:6311808

IDA: Inferred from Direct Assay

P

complete

GO:0050660

FAD binding

PMID:4863745

IDA: Inferred from Direct Assay

F

complete

GO:0015036

disulfide oxidoreductase activity

PMID:4863745

IDA: Inferred from Direct Assay

F

complete

GO:0005737

cytoplasm

PMID:4863745

IDA: Inferred from Direct Assay

C

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of E3-CPLX

could be indirect

Protein

iscS

PMID:16606699

Experiment(s):EBI-1135611

Protein

aceE

PMID:16606699

Experiment(s):EBI-1135611

Protein

ribB

PMID:16606699

Experiment(s):EBI-1135611

Protein

Subunits of 2-oxoglutarate dehydrogenase complex

could be indirect

Protein

Subunits of gcv system

could be indirect

Protein

Subunits of pyruvate dehydrogenase multienzyme complex

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

Cytoplasm

PMID:9298646, PMID:6352260

EchoLocation:lpd


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSTEIKTQVV VLGAGPAGYS AAFRCADLGL ETVIVERYNT LGGVCLNVGC IPSKALLHVA
KVIEEAKALA EHGIVFGEPK TDIDKIRTWK EKVINQLTGG LAGMAKGRKV KVVNGLGKFT
GANTLEVEGE NGKTVINFDN AIIAAGSRPI QLPFIPHEDP RIWDSTDALE LKEVPERLLV
MGGGIIGLEM GTVYHALGSQ IDVVEMFDQV IPAADKDIVK VFTKRISKKF NLMLETKVTA
VEAKEDGIYV TMEGKKAPAE PQRYDAVLVA IGRVPNGKNL DAGKAGVEVD DRGFIRVDKQ
LRTNVPHIFA IGDIVGQPML AHKGVHEGHV AAEVIAGKKH YFDPKVIPSI AYTEPEVAWV
GLTEKEAKEK GISYETATFP WAASGRAIAS DCADGMTKLI FDKESHRVIG GAIVGTNGGE
LLGEIGLAIE MGCDAEDIAL TIHAHPTLHE SVGLAAEVFE GSITDLPNPK AKKK
Length

474

Mol. Wt

50.688 kDa

pI

6.1 (calculated)

Extinction coefficient

33,920 - 34,545 (calc based on 8 Y, 4 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0A9P0

Domain

177..257

PF00070 Pyridine nucleotide-disulphide oxidoreductase

PMID:19920124

Domain

347..456

PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain

PMID:19920124

Domain

8..319

PF07992 Pyridine nucleotide-disulphide oxidoreductase

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=lpd taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128109

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:944854

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000404

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A9P0

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10543

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10543

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:944854

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000536

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0538

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

2.24E+04

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

485.277+/-3.31

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.28425+/-0.08364

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

1.420294944

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

44872

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

9566

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

20771

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

lpdA

pdhR-aceEF-lpdA

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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:127892..127932 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0116 (EcoliWiki Page)

NCBI GEO profiles for lpd

microarray

GenExpDB:b0116 (EcoliWiki Page)

Summary of data for lpd from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (127510..127977) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ01; Well:F9[7]

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Notes

Accessions Related to lpd Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10543

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0538

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0116

EcoGene

EcoGene:EG10543

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000536

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000404

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000019195 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000026111 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G48030 (score: 1.000; bootstrap: 99%)
  • AT3G17240 (score: 0.911)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000033696 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00040306 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00010794 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000005721 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000016324 (score: 1.000; bootstrap: 99%)
  • ENSCINP00000015928 (score: 0.115)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040120-4 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-238 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0216232 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0036762 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA20345-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000012869 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000205402 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000008640 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000020396 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:107450 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q75M05 (score: 1.000; bootstrap: 99%)
  • Q94CN9 (score: 0.770)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000033535 (score: 1.000; bootstrap: 67%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000008980 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YFL018C (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC10029c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000173099 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00007788001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000023412 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Shigella flexneri

LPDA

From SHIGELLACYC

E. coli O157

LPDA

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain

Pfam (EcoliWiki Page)

PF00070 Pyridine nucleotide-disulphide oxidoreductase

Superfamily (EcoliWiki Page)

SUPERFAMILY:51905

Panther (EcoliWiki Page)

PTHR22912:SF20

Superfamily (EcoliWiki Page)

SUPERFAMILY:55424

Pfam (EcoliWiki Page)

PF07992 Pyridine nucleotide-disulphide oxidoreductase

EcoCyc

EcoCyc:EG10543

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10543

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000536

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0538

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000404

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

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