gltA:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

gltA

Gene Synonym(s)

ECK0709, b0720, JW0710, glut, icdB[1], gluT, icdB

Product Desc.

citrate synthase[2][3]

Citrate synthase; hexameric[4]

Product Synonyms(s)

citrate synthase[1], B0720[2][1], IcdB[2][1], GltA[2][1] , ECK0709, gluT, icdB, JW0710, b0720

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): gltA[2], OP00147

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

gltA

Mnemonic

Glutamate

Synonyms

ECK0709, b0720, JW0710, glut, icdB[1], gluT, icdB

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

16.22 minutes 

MG1655: 753691..752408
<gbrowseImage> name=NC_000913:752408..753691 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 735259..733976
<gbrowseImage> name=NC_012967:733976..735259 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 655168..656451
<gbrowseImage> name=NC_012759:655168..656451 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 754890..753607
<gbrowseImage> name=NC_007779:753607..754890 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 806283..805000
<gbrowseImage> name=NC_010473:805000..806283 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

752411

Edman degradation

PMID:6380576
PMID:9732527


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

gltAC207S

C207S

Weakened NADH binding and inhibition

seeded from UniProt:P0ABH7

gltAE208A

E208A

Weakened NADH binding and inhibition

seeded from UniProt:P0ABH7

ΔgltA (Keio:JW0710)

deletion

deletion

PMID:16738554

Shigen
CGSC8784[5]

gltA::Tn5KAN-2 (FB20222)

Insertion at nt 774 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20222

does not contain pKD46

ΔgltA::kan

deletion

Biolog:respiration

unable to respire Dextrin

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire N-Acetyl-D-glucosamine

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire D-Fructose

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire L-Fucose

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire D-Galactose

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire Maltose

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire D-Mannitol

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire D-Mannose

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire b-Methyl-D-glucoside

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire D-Sorbitol

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire a-D-Glucose-1-phosphate

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire a-D-Glucose-6-phosphate

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire DL-a-Glycerol

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire D-Galactoniate

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire D-Galacturonate

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire D-Gluconate

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire D-Glucuronate

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire DL-Lactate

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire Succinate

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire Bromosuccinate

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire L-Alanine

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire L-Alanyl-glycine

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire L-Asparagine

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire L-Aspartate

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire D-Serine

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire L-Serine

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire Inosine

PMID:16095938

ΔgltA::kan

deletion

Biolog:respiration

unable to respire Uridine

PMID:16095938

gltA6

CGSC:6813

gltA9

CGSC:7911

gltA16

CGSC:8663

gltA5

CGSC:9108

gltA0

CGSC:12049

ΔgltA770::kan

PMID:16738554

CGSC:101196


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Notes

Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0710

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGCTGATACAAAAGCAAAACT

Primer 2:CCACGCTTGATATCGCTTTTAAA

7E10

Kohara Phage

Genobase

PMID:3038334

asnB3057::Tn10

Linked marker

CAG18433 = CGSC7349[5]

est. P1 cotransduction: 9% [6]
Synonyms:zbf-3057::Tn10 nnnThe Tn10 in CAG18433 is inserted in the asnB regulatory region, 4 bp before the start of the asnB ORF.

nadA57::Tn10

Linked marker

CAG12147 = CGSC7351[5]

est. P1 cotransduction: 36% [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10402

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10402

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000395

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945323

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0397

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002451

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

GltA

Synonyms

citrate synthase[1], B0720[2][1], IcdB[2][1], GltA[2][1] , ECK0709, gluT, icdB, JW0710, b0720

Product description

citrate synthase[2][3]

Citrate synthase; hexameric[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0004108

citrate (Si)-synthase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010953

F

Seeded from EcoCyc (v14.0)

complete

GO:0004108

citrate (Si)-synthase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.3.3.1

F

Seeded from EcoCyc (v14.0)

complete

GO:0003878

ATP citrate synthase activity

F

Missing: evidence, reference

GO:0005829

cytosol

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0006099

tricarboxylic acid cycle

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019810

P

Seeded from EcoCyc (v14.0)

complete

GO:0006099

tricarboxylic acid cycle

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0816

P

Seeded from EcoCyc (v14.0)

complete

GO:0006099

tricarboxylic acid cycle

PMID:13367004

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

GO:0044262

cellular carbohydrate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002020

P

Seeded from EcoCyc (v14.0)

complete

GO:0044262

cellular carbohydrate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR010953

P

Seeded from EcoCyc (v14.0)

complete

GO:0044262

cellular carbohydrate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016141

P

Seeded from EcoCyc (v14.0)

complete

GO:0044262

cellular carbohydrate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016142

P

Seeded from EcoCyc (v14.0)

complete

GO:0046912

transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002020

F

Seeded from EcoCyc (v14.0)

complete

GO:0046912

transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016141

F

Seeded from EcoCyc (v14.0)

complete

GO:0046912

transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016142

F

Seeded from EcoCyc (v14.0)

complete

GO:0046912

transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR019810

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

matC

PMID:16606699

Experiment(s):EBI-1137791

Protein

groL

PMID:16606699

Experiment(s):EBI-1137791

Protein

nadE

PMID:16606699

Experiment(s):EBI-1137791

Protein

rraB

PMID:19402753

LCMS(ID Probability):99.6

Protein

rho

PMID:19402753

LCMS(ID Probability):99.6

Protein

iscS

PMID:19402753

LCMS(ID Probability):99.2

Protein

ybgI

PMID:19402753

LCMS(ID Probability):99.6

Protein

dnaN

PMID:19402753

LCMS(ID Probability):99.6

Protein

rfaD

PMID:19402753

LCMS(ID Probability):99.6

Protein

osmY

PMID:19402753

LCMS(ID Probability):99.4

Protein

acnA

PMID:19402753

LCMS(ID Probability):99.6

Protein

groS

PMID:19402753

LCMS(ID Probability):99.6

Protein

tig

PMID:19402753

LCMS(ID Probability):99.6

Protein

glnE

PMID:19402753

LCMS(ID Probability):99.6

Protein

astC

PMID:19402753

LCMS(ID Probability):99.4

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MADTKAKLTL NGDTAVELDV LKGTLGQDVI DIRTLGSKGV FTFDPGFTST ASCESKITFI
DGDEGILLHR GFPIDQLATD SNYLEVCYIL LNGEKPTQEQ YDEFKTTVTR HTMIHEQITR
LFHAFRRDSH PMAVMCGITG ALAAFYHDSL DVNNPRHREI AAFRLLSKMP TMAAMCYKYS
IGQPFVYPRN DLSYAGNFLN MMFSTPCEPY EVNPILERAM DRILILHADH EQNASTSTVR
TAGSSGANPF ACIAAGIASL WGPAHGGANE AALKMLEEIS SVKHIPEFVR RAKDKNDSFR
LMGFGHRVYK NYDPRATVMR ETCHEVLKEL GTKDDLLEVA MELENIALND PYFIEKKLYP
NVDFYSGIIL KAMGIPSSMF TVIFAMARTV GWIAHWSEMH SDGMKIARPR QLYTGYEKRD
FKSDIKR
Length

427

Mol. Wt

48.016 kDa

pI

6.7 (calculated)

Extinction coefficient

40,340 - 41,215 (calc based on 16 Y, 3 W, and 7 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

46..409

PF00285 Citrate synthase

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=gltA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128695

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945323

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002451

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0ABH7

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10402

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10402

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945323

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000395

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0397

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

1.36E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

89.104+/-1.124

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.272018706

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

2408

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

8529

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

1644

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

gltA

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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:753671..753711 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0720 (EcoliWiki Page)

NCBI GEO profiles for gltA

microarray

GenExpDB:b0720 (EcoliWiki Page)

Summary of data for gltA from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (753622..754474) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ02; Well:C5[7]

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Notes

Accessions Related to gltA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10402

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0397

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0720

EcoGene

EcoGene:EG10402

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000395

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002451

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000015768 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000034681 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000009152 (score: 0.174)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G42790 (score: 1.000; bootstrap: 100%)
  • AT3G58750 (score: 0.815)
  • AT3G58740 (score: 0.613)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000005730 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00031330 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000833 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000000167 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000000330 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-1058 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1132 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0214944 (score: 1.000; bootstrap: 100%)
  • DDB0191110 (score: 0.408)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0026708 (score: 1.000; bootstrap: 100%)
  • FBgn0037988 (score: 0.394)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17736-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000342056 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000003339 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:88529 (score: 1.000; bootstrap: 100%)
  • MGI:1919082 (score: 0.922)

From Inparanoid:20070104

Oryza gramene

  • Q6EUF8 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000008664 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000034921 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YCR005C (score: 1.000; bootstrap: 100%)
  • YNR001C (score: 0.792)
  • YPR001W (score: 0.341)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC6C34 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000127671 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00023547001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

GLTA

From SHIGELLACYC

E. coli O157

GLTA

From ECOO157CYC

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Notes

Families

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Database Accession Notes

Pfam (EcoliWiki Page)

PF00285 Citrate synthase

Superfamily (EcoliWiki Page)

SUPERFAMILY:48256

Panther (EcoliWiki Page)

PTHR11739:SF0

EcoCyc

EcoCyc:EG10402

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10402

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000395

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0397

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002451

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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