galK:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

galK

Gene Synonym(s)

ECK0746, b0757, JW0740, galA[1], galA

Product Desc.

Galactokinase[2]

Product Synonyms(s)

galactokinase[1], B0757[3][1], GalA[3][1], GalK[3][1], ATP:D-galactose 1-phosphotransferase[3][1] , ECK0746, galA, JW0740, b0757

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): galETKM[3], OP00032, galETK

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

galK

Mnemonic

Galactose

Synonyms

ECK0746, b0757, JW0740, galA[1], galA

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

16.99 minutes 

MG1655: 789202..788054
<gbrowseImage> name=NC_000913:788054..789202 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 770608..769460
<gbrowseImage> name=NC_012967:769460..770608 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 691022..692170
<gbrowseImage> name=NC_012759:691022..692170 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 790401..789253
<gbrowseImage> name=NC_007779:789253..790401 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 843130..840646
<gbrowseImage> name=NC_010473:840646..843130 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

788057

Edman degradation

PMID:200486


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔgalK (Keio:JW0740)

deletion

deletion

PMID:16738554

Shigen
CGSC8803[4]

galK::Tn5KAN-2 (FB20232)

Insertion at nt 850 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20232

does not contain pKD46

ΔgalK2

E coli bacteria was treated with UV radiation to induce mutation in galactose pathway [5]

Galactose is broken down through α-galactose-1-phosphate(GAL-1-P), uridine diphosphogalactose (UDPGal), and uridine diphosphoglucose (UDPG). Three enzymes are used to convert galactose to glycolytic intermediate. Under incubation, galactose mutants were given galactose and ATP and researchers measured the production of galactose-1-phosphate to determine galactokinase activity. Galactose negative mutants showed no galactokinase activity and therefore no production of galacose-1-phosphate. [6]

PMID:17247607 PMID:13390972

galK2(Oc)

PMID:7692254

CGSC:4498

ochre (UAA) mutation

galK35

CGSC:4744

galK30

CGSC:5771

galK16

CGSC:7814

galK42(Am)

CGSC:7968

amber (UAG) mutation

galK48

CGSC:9020

galK8

CGSC:11114

galK0

CGSC:14523

galK900

CGSC:14875

galK24

CGSC:72627

galK62

CGSC:72661

ΔgalK729::kan

PMID:16738554

CGSC:101078


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Notes

Notice: no direct refrence to the isolation of galactose negative mutants of galactokinase 2. Direct publication not identified for galactokinase 2. This shows the isolation of galactokinase mutants, but it should have been found in similar manner. Galk2 mutation is a newer discovery and not quite clear yet.


Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0740

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAGTCTGAAAGAAAAAACACA

Primer 2:CCGCACTGTCCTGCTCCTTGTGA

4H1

Kohara Phage

Genobase

PMID:3038334

nadA57::Tn10

Linked marker

CAG12147 = CGSC7351[4]

est. P1 cotransduction: 75% [7]

zbh-29::Tn10

Linked marker

CAG18493 = CGSC7353[4]

est. P1 cotransduction: 27% [7]
Synonyms:zbi-29::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10363

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10363

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000356

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945358

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0358

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002568

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

GalK

Synonyms

galactokinase[1], B0757[3][1], GalA[3][1], GalK[3][1], ATP:D-galactose 1-phosphotransferase[3][1] , ECK0746, galA, JW0740, b0757

Product description

Galactokinase[2]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0004335

galactokinase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00246

F

Seeded from EcoCyc (v14.0)

complete

GO:0004335

galactokinase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000705

F

Seeded from EcoCyc (v14.0)

complete

GO:0004335

galactokinase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.7.1.6

F

Seeded from EcoCyc (v14.0)

complete

GO:0004335

galactokinase activity

PMID:13977183

IDA: Inferred from Direct Assay

F

complete

GO:0005524

ATP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00246

F

Seeded from EcoCyc (v14.0)

complete

GO:0004335

galactokinase activity

PMID:13390972

IMP: Inferred from Mutant Phenotype

F

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000705

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006203

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006204

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006206

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00246

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006206

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006012

galactose metabolic process

PMID:13914787

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc (v14.0)

complete

GO:0016310

phosphorylation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006204

P

Seeded from EcoCyc (v14.0)

complete

GO:0016310

phosphorylation

PMID:13977183

IDA: Inferred from Direct Assay

P

Seeded from EcoCyc (v14.0)

complete

GO:0046835

carbohydrate phosphorylation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000705

P

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

PMID:4889465

IDA: Inferred from Direct Assay

C

complete

GO:0033499

galactose catabolic process via UDP-galactose

PMID:16590575

IMP: Inferred from Mutant Phenotype

P

Enzyme assays on a variety of gal mutants.

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSLKEKTQSL FANAFGYPAT HTIQAPGRVN LIGEHTDYND GFVLPCAIDY QTVISCAPRD
DRKVRVMAAD YENQLDEFSL DAPIVAHENY QWANYVRGVV KHLQLRNNSF GGVDMVISGN
VPQGAGLSSS ASLEVAVGTV LQQLYHLPLD GAQIALNGQE AENQFVGCNC GIMDQLISAL
GKKDHALLID CRSLGTKAVS MPKGVAVVII NSNFKRTLVG SEYNTRREQC ETGARFFQQP
ALRDVTIEEF NAVAHELDPI VAKRVRHILT ENARTVEAAS ALEQGDLKRM GELMAESHAS
MRDDFEITVP QIDTLVEIVK AVIGDKGGVR MTGGGFGGCI VALIPEELVP AVQQAVAEQY
EAKTGIKETF YVCKPSQGAG QC
Length

382

Mol. Wt

41.44 kDa

pI

6.1 (calculated)

Extinction coefficient

20,400 - 21,525 (calc based on 10 Y, 1 W, and 9 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0A6T3

Domain

114..182

PF00288 GHMP kinases N terminal domain

PMID:19920124

Domain

278..362

PF08544 GHMP kinases C terminal

PMID:19920124

Domain

8..59

PF10509 Galactokinase galactose-binding signature

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=galK taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

Purification protocol

PMID:13977183

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128725

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945358

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002568

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A6T3

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10363

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10363

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945358

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000356

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0358

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

7.04E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

E. coli K-12 MG1655

313

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

258

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

163

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

galETKM

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:789182..789222 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0757 (EcoliWiki Page)

NCBI GEO profiles for galK

microarray

GenExpDB:b0757 (EcoliWiki Page)

Summary of data for galK from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to galK Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10363

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0358

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0757

EcoGene

EcoGene:EG10363

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000356

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002568

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000018617 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000023635 (score: 1.000; bootstrap: 77%)
  • ENSAPMP00000028810 (score: 0.998)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G10700 (score: 1.000; bootstrap: 50%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000019921 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00040825 (score: 1.000; bootstrap: 100%)
  • WBGene00042999 (score: 0.155)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00006461 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000007327 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000010223 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-041010-79 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-041010-79 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231667 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0035950 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18788-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000003627 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000225614 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000028663 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000009478 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Mus musculus

  • MGI:95730 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000016406 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000008525 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YBR020W (score: 1.000; bootstrap: 100%)
  • YDR009W (score: 0.719)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000169199 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00003856001 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000027506 (score: 1.000; bootstrap: 96%)

From Inparanoid:20070104

Shigella flexneri

GALK

From SHIGELLACYC

E. coli O157

GALK

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00288 GHMP kinases N terminal domain

Panther (EcoliWiki Page)

PTHR10457:SF6

Superfamily (EcoliWiki Page)

SUPERFAMILY:54211

Superfamily (EcoliWiki Page)

SUPERFAMILY:55060

Pfam (EcoliWiki Page)

PF08544 GHMP kinases C terminal

Pfam (EcoliWiki Page)

PF10509 Galactokinase galactose-binding signature

EcoCyc

EcoCyc:EG10363

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10363

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000356

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0358

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002568

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
  5. ↑ Morse, ML et al. (1956) Transduction in Escherichia Coli K-12. Genetics 41 142-56 PubMed
  6. ↑ KURAHASHI, K (1957) Enzyme formation in galactose-negative mutants of Escherichia coli. Science 125 114-6 PubMed
  7. ↑ 7.0 7.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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