fkpA:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Standard Name

fkpA

Gene Synonym(s)

ECK3334, b3347, JW3309, yzzS[1], yzzS

Product Desc.

peptidyl-prolyl cis-trans isomerase; in protein folding[2][3]

Periplasmic peptidylprolyl cis,trans isomerase; heat shock inducible; PPIase-independent chaperone activity, binds FK506[4]

Product Synonyms(s)

FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)[1], B3347[2][1], YzzS[2][1], FkpA[2][1] , ECK3334, JW3309, yzzS, b3347

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): fkpA[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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An fkpA, surA, ppiB, ppiD quadruple mutant is viable. FkpB is required for colicin M toxicity (Hullman, 2008).[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

fkpA

Mnemonic

FK506-binding protein

Synonyms

ECK3334, b3347, JW3309, yzzS[1], yzzS

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

74.89 minutes 

MG1655: 3475441..3474629
<gbrowseImage> name=NC_000913:3474629..3475441 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3405324..3404512
<gbrowseImage> name=NC_012967:3404512..3405324 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3361786..3362598
<gbrowseImage> name=NC_012759:3361786..3362598 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4162997..4163809
<gbrowseImage> name=NC_007779:4162997..4163809 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3573186..3572374
<gbrowseImage> name=NC_010473:3572374..3573186 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

3474632

Edman degradation

PMID:9298646
PMID:9740056


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔfkpA (Keio:JW3309)

deletion

deletion

PMID:16738554

Shigen
CGSC10472[5]

fkpA::Tn5KAN-I-SceI (FB21124)

Insertion at nt 557 in Plus orientation

PMID:15262929

E. coli Genome Project:FB21124

does not contain pKD46

ΔfkpA754::kan

PMID:16738554

CGSC:100892


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Notes

Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes

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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW3309

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAAATCACTGTTTAAAGTAAC

Primer 2:CCTTTTTTAGCAGAATCTGCGGC

3F8

Kohara Phage

Genobase

PMID:3038334

smg-3082::Tn10

Linked marker

CAG12071 = CGSC7444[5]

est. P1 cotransduction: 13% [6]
Synonyms:zhb-3082::Tn10, zhd-3082::Tn10

zhf-3084::Tn10

Linked marker

CAG18456 = CGSC7576[5]

est. P1 cotransduction: 34% [6]
Synonyms:zhe-3084::Tn10nnnCAG18456 also carries cysG0 (CGSC).

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G7716

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12900

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004261

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947850

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2737

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010938

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

FkpA

Synonyms

FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)[1], B3347[2][1], YzzS[2][1], FkpA[2][1] , ECK3334, JW3309, yzzS, b3347

Product description

peptidyl-prolyl cis-trans isomerase; in protein folding[2][3]

Periplasmic peptidylprolyl cis,trans isomerase; heat shock inducible; PPIase-independent chaperone activity, binds FK506[4]

EC number (for enzymes)

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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0030288

outer membrane-bounded periplasmic space

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:5.2.1.8

F

Seeded from EcoCyc (v14.0)

complete

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0697

F

Seeded from EcoCyc (v14.0)

complete

GO:0006457

protein folding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000774

P

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

PMID:18554332

IPI: Inferred from Physical Interaction

UniProtKB:P05820


F

complete

GO:0006457

protein folding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001179

P

Seeded from EcoCyc (v14.0)

complete

GO:0042026

protein refolding

PMID:18554332

IDA: Inferred from Direct Assay

P

complete

GO:0006457

protein folding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0697

P

Seeded from EcoCyc (v14.0)

complete

GO:0016853

isomerase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0413

F

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0574

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0200

C

Seeded from EcoCyc (v14.0)

complete

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

yeiT

PMID:15690043

Experiment(s):EBI-893366

Protein

carA

PMID:15690043

Experiment(s):EBI-893366

Protein

entE

PMID:15690043

Experiment(s):EBI-893366

Protein

lsrK

PMID:15690043

Experiment(s):EBI-893366

Protein

ypdC

PMID:16606699

Experiment(s):EBI-1145628

Protein

ulaR

PMID:16606699

Experiment(s):EBI-1145628

Protein

minD

PMID:16606699

Experiment(s):EBI-1145628

Protein

ydhT

PMID:16606699

Experiment(s):EBI-1145628

Protein

lpxB

PMID:16606699

Experiment(s):EBI-1145628

Protein

sxy

PMID:16606699

Experiment(s):EBI-1145628

Protein

ygdL

PMID:16606699

Experiment(s):EBI-1145628

Protein

xseA

PMID:16606699

Experiment(s):EBI-1145628

Protein

rpsD

PMID:16606699

Experiment(s):EBI-1145628

Protein

carA

PMID:19402753

LCMS(ID Probability):99.0

Protein

entE

PMID:19402753

LCMS(ID Probability):99.0

Protein

lsrK

PMID:19402753

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

periplasm

From EcoCyc[3]

Periplasm

PMID:9298646

EchoLocation:fkpA


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MKSLFKVTLL ATTMAVALHA PITFAAEAAK PATAADSKAA FKNDDQKSAY ALGASLGRYM
ENSLKEQEKL GIKLDKDQLI AGVQDAFADK SKLSDQEIEQ TLQAFEARVK SSAQAKMEKD
AADNEAKGKE YREKFAKEKG VKTSSTGLVY QVVEAGKGEA PKDSDTVVVN YKGTLIDGKE
FDNSYTRGEP LSFRLDGVIP GWTEGLKNIK KGGKIKLVIP PELAYGKAGV PGIPPNSTLV
FDVELLDVKP APKADAKPEA DAKAADSAKK
Length

270

Mol. Wt

28.882 kDa

pI

8.8 (calculated)

Extinction coefficient

15,930 (calc based on 7 Y, 1 W, and 0 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-25

UniProt Manual:Signal Peptides

UniProt:P45523

Domain

156..246

PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase

PMID:19920124

Domain

23..152

PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase

PMID:19920124

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=fkpA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131226

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947850

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010938

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P45523

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7716

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12900

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947850

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004261

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2737

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

4.18E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

3.937+/-0.048

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.286945813

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

11791

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

3102

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

7345

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

fkpA

Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3475421..3475461 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference


Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3347 (EcoliWiki Page)

NCBI GEO profiles for fkpA

microarray

GenExpDB:b3347 (EcoliWiki Page)

Summary of data for fkpA from multiple microarray studies


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (3474970..3475318) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ09; Well:E11[7]

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Notes

Accessions Related to fkpA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G7716

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2737

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3347

EcoGene

EcoGene:EG12900

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004261

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010938

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000002177 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000008197 (score: 0.193)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G25340 (score: 1.000; bootstrap: 68%)
  • AT5G05420 (score: 0.099)
  • AT3G12340 (score: 0.075)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000008269 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000018091 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000010928 (score: 0.857)
  • ENSBTAP00000011007 (score: 0.791)
  • ENSBTAP00000004419 (score: 0.729)
  • ENSBTAP00000019874 (score: 0.489)
  • ENSBTAP00000021025 (score: 0.085)
  • ENSBTAP00000033613 (score: 0.080)
  • ENSBTAP00000020071 (score: 0.080)
  • ENSBTAP00000001452 (score: 0.080)
  • ENSBTAP00000015220 (score: 0.070)
  • ENSBTAP00000009998 (score: 0.068)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00027056 (score: 1.000; bootstrap: 100%)
  • WBGene00028338 (score: 1.000; bootstrap: 100%)
  • WBGene00027120 (score: 0.284)
  • WBGene00038380 (score: 0.176)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00001426 (score: 1.000; bootstrap: 100%)
  • WBGene00001428 (score: 0.163)
  • WBGene00001431 (score: 0.118)
  • WBGene00001427 (score: 0.094)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000010138 (score: 1.000; bootstrap: 70%)
  • ENSCAFP00000021476 (score: 1.000; bootstrap: 50%)
  • ENSCAFP00000005884 (score: 0.786)
  • ENSCAFP00000012923 (score: 0.095)
  • ENSCAFP00000004543 (score: 0.090)
  • ENSCAFP00000022934 (score: 0.089)
  • ENSCAFP00000001930 (score: 0.089)
  • ENSCAFP00000004699 (score: 0.085)
  • ENSCAFP00000023374 (score: 0.055)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000018088 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-7275 (score: 1.000; bootstrap: 89%)
  • ZDB-CDNA-040425-1480 (score: 1.000; bootstrap: 90%)
  • ZDB-CDNA-040926-17 (score: 0.896)
  • ZDB-GENE-040927-9 (score: 0.896)
  • ZDB-CDNA-040425-2725 (score: 0.784)
  • ZDB-GENE-040426-1785 (score: 0.784)
  • ZDB-CDNA-040625-124 (score: 0.194)
  • ZDB-GENE-030131-514 (score: 0.194)
  • ZDB-CDNA-040425-301 (score: 0.187)
  • ZDB-GENE-030616-419 (score: 0.052)
  • ZDB-GENE-050522-470 (score: 0.052)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0203130 (score: 1.000; bootstrap: 97%)
  • DDB0205305 (score: 0.089)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0037930 (score: 1.000; bootstrap: 63%)
  • FBgn0010470 (score: 0.188)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA13197-PA (score: 1.000; bootstrap: 100%)
  • GA22070-PA (score: 0.210)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000026566 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000001396 (score: 0.116)
  • ENSGALP00000029868 (score: 0.094)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000262925 (score: 1.000; bootstrap: 100%)
  • ENSP00000310935 (score: 1.000; bootstrap: 100%)
  • ENSP00000348493 (score: 0.926)
  • ENSP00000238793 (score: 0.793)
  • ENSP00000001008 (score: 0.104)
  • ENSP00000317232 (score: 0.078)
  • ENSP00000338160 (score: 0.074)
  • ENSP00000242209 (score: 0.073)
  • ENSP00000222803 (score: 0.068)
  • ENSP00000256680 (score: 0.068)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000021628 (score: 1.000; bootstrap: 87%)
  • ENSMMUP00000021038 (score: 0.832)
  • ENSMMUP00000016204 (score: 0.658)
  • ENSMMUP00000001713 (score: 0.292)
  • ENSMMUP00000004902 (score: 0.112)
  • ENSMMUP00000009718 (score: 0.068)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000024390 (score: 1.000; bootstrap: 66%)
  • ENSMODP00000002601 (score: 0.478)
  • ENSMODP00000022886 (score: 0.092)

From Inparanoid:20070104

Mus musculus

  • MGI:95541 (score: 1.000; bootstrap: 100%)
  • MGI:95542 (score: 1.000; bootstrap: 100%)
  • MGI:1336205 (score: 0.744)
  • MGI:95543 (score: 0.090)
  • MGI:104670 (score: 0.090)
  • MGI:1350921 (score: 0.080)
  • MGI:2387639 (score: 0.080)
  • MGI:1913370 (score: 0.075)
  • MGI:1336879 (score: 0.070)
  • MGI:104769 (score: 0.055)

From Inparanoid:20070104

Oryza gramene

  • Q70YJ6 (score: 1.000; bootstrap: 90%)
  • Q5N801 (score: 0.645)
  • Q43207 (score: 0.091)
  • Q9XFE4 (score: 0.091)
  • Q7F1F2 (score: 0.091)
  • Q6K5Q1 (score: 0.077)
  • Q653Z1 (score: 0.059)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000022531 (score: 1.000; bootstrap: 85%)
  • ENSPTRP00000043326 (score: 0.889)
  • ENSPTRP00000020110 (score: 0.793)
  • ENSPTRP00000007751 (score: 0.104)
  • ENSPTRP00000030899 (score: 0.074)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000012608 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000028725 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000019527 (score: 0.080)
  • ENSRNOP00000007821 (score: 0.075)
  • ENSRNOP00000015722 (score: 0.070)
  • ENSRNOP00000022029 (score: 0.065)
  • ENSRNOP00000013205 (score: 0.065)
  • ENSRNOP00000008737 (score: 0.061)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YML074C (score: 1.000; bootstrap: 100%)
  • YLR449W (score: 0.504)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC8397c (score: 1.000; bootstrap: 55%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000162512 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000139297 (score: 0.619)
  • NEWSINFRUP00000129987 (score: 0.134)
  • NEWSINFRUP00000144593 (score: 0.090)
  • NEWSINFRUP00000128779 (score: 0.075)
  • NEWSINFRUP00000147444 (score: 0.067)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00009727001 (score: 1.000; bootstrap: 100%)
  • GSTENP00023507001 (score: 1.000; bootstrap: 100%)
  • GSTENP00018378001 (score: 0.654)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000051252 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Shigella flexneri

FKPA

From SHIGELLACYC

E. coli O157

FKPA

From ECOO157CYC


Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase

Pfam (EcoliWiki Page)

PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase

Superfamily (EcoliWiki Page)

SUPERFAMILY:54534

EcoCyc

EcoCyc:G7716

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12900

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004261

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2737

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010938

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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