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!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10669 ECOCYC:EG10669]
EcoCyc:EG10669
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Escherichia coli str. K-12 substr. MG1655  
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
[[EcoGene]]
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[http://ecogene.org/geneinfo.php?eg_id=EG10669 EcoGene:EG10669]
EcoGene:EG10669
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Escherichia coli str. K-12 substr. MG1655  
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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Escherichia coli str. K-12 substr. MG1655  
Escherichia coli str. K-12 substr. MG1655  
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[[RegulonDB]]
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RegulonDB:ECK120000662
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0663
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0003240
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Revision as of 07:14, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ompA

Mnemonic

Outer membrane protein

Synonyms

ECK0948, b0957, JW0940, con, tolG, tut[1], tut

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Notes

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

21.95 minutes 

MG1655: 1019276..1018236
<gbrowseImage> name=NC_000913:1018236..1019276 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1037144..1036104
<gbrowseImage> name=NC_012967:1036104..1037144 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 921204..922244
<gbrowseImage> name=NC_012759:921204..922244 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1020475..1019435
<gbrowseImage> name=AC_000091:1019435..1020475 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1073204..1072164
<gbrowseImage> name=NC_010473:1072164..1073204 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

1018239

Edman degradation

PMID:340230[2]
PMID:7001461[3]
PMID:8740179[4]
PMID:9298646[5]
PMID:9629924[6]


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ompA(del) (Keio:JW0940)

deletion

deletion

PMID:16738554[7]

Shigen

CGSC8942[8]

ompA::Tn5KAN-2 (FB20072)

Insertion at nt 518 in Minus orientation

PMID:15262929[9]

E. coli Genome Project:FB20072

does not contain pKD46

ompA::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938[10]

ompA252

CGSC:9906

ompA256

CGSC:9910

ompA772(del)::kan

PMID:16738554[7]

CGSC:102174

P678-54ompA2101

Sensitivity to

increased sensitivity to acid, table 3.

PMID:1314797[11]

Experimental strain: RJR200

ompA in strain P460

Resistant to

Resistant to bacteriocin Colicin K

PMID:1991710[12]

Strain: P460

table 3

ompA in strain P1636

Resistant to

Resistant to bacteriocin Colicin L

PMID:1991710[12]

Strain: P460

table 3

ompA in strain P460

Resistant to

Resistant to bacteriophage K3

PMID:1991710[12]

PMID:6819426[13]

Strain: p460

Figure 6

ompA1

Resistant to

Resistant to novobicin

PMID:6819426[13]

Strains: ompA1, ompA2 and ompA3

table 6

ompA1

Resistant to

Resistant to chelator, specifically EDTA

PMID:6819426[13]

Strains: ompA1, ompA2 and ompA3

table 6

ompA in strain CC205

Resistant to

Resistant to Phage TUII*

PMID:6819426[13]

Strain: CC205

Table 4

ompA in strain CC205

Resistant to

Resistant to phage K3hl

PMID:6819426[13]

strain CC205

Table 4

ompA in strain CC205

Resistant to

Resistant to pphage K3

PMID:6819426[13]

Strain: cc205

table 4

ompA in strain P460

Resistant to

Resistance to Bacteriocin JF246

PMID:783128[14]

Strain P460

Table 3

con-tsx in P1731

Resistant to

Resistance to Bacteriophage T6

PMID:786287[15]

Double Mutation to the con & tsx genes cause resistance to the phage T6, possibly due to the reduced production of a protein (tsx-protein) thought to be involved phage binding to the cell.

con-tsx in P1731

Resistant to

Resistance to Colicin K

PMID:786287[15]

Double Mutation to the con & tsx genes cause resistance to the Colicin K, possibly due to the reduced production of a protein (tsx-protein) thought to be involved phage binding to the cell.

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0940

Plasmid clone

Shigen

PMID:16769691[16]

Status:Clone OK

Primer 1:GCCAAAAAGACAGCTATCGCGAT

Primer 2:CCAGCCTGCGGCTGAGTTACAA

E2E5

Kohara Phage

Genobase

PMID:3038334[17]

9B10

Kohara Phage

Genobase

PMID:3038334[17]

zcb-3059::Tn10

Linked marker

CAG12094 = CGSC7358[8]

est. P1 cotransduction: 57% [18]

zcc-282::Tn10

Linked marker

CAG18466 = CGSC7359[8]

est. P1 cotransduction: 14% [18]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10669

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10669

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945571

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000662

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0663

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003240

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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<protect>

References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Schweizer, M et al. (1978) Major proteins of the Escherichia coli outer cell envelope membrane. Interaction of protein II with lipopolysaccharide. Eur. J. Biochem. 82 211-7 PubMed
  3. ↑ Chen, R et al. (1980) Primary structure of major outer membrane protein II (ompA protein) of Escherichia coli K-12. Proc. Natl. Acad. Sci. U.S.A. 77 4592-6 PubMed
  4. ↑ Pasquali, C et al. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17 547-55 PubMed
  5. ↑ Link, AJ et al. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18 1259-313 PubMed
  6. ↑ Molloy, MP et al. (1998) Extraction of membrane proteins by differential solubilization for separation using two-dimensional gel electrophoresis. Electrophoresis 19 837-44 PubMed
  7. ↑ 7.0 7.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  8. ↑ 8.0 8.1 8.2 CGSC: The Coli Genetics Stock Center
  9. ↑ Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
  10. ↑ Ito, M et al. (2005) Functional analysis of 1440 Escherichia coli genes using the combination of knock-out library and phenotype microarrays. Metab. Eng. 7 318-27 PubMed
  11. ↑ Rowbury, RJ et al. (1992) The PhoE porin and transmission of the chemical stimulus for induction of acid resistance (acid habituation) in Escherichia coli. J. Appl. Bacteriol. 72 233-43 PubMed
  12. ↑ 12.0 12.1 12.2 Santangelo, JD et al. (1991) Metronidazole activation and isolation of Clostridium acetobutylicum electron transport genes. J. Bacteriol. 173 1088-95 PubMed
  13. ↑ 13.0 13.1 13.2 13.3 13.4 13.5 Manoil, C & Rosenbusch, JP (1982) Conjugation-deficient mutants of Escherichia coli distinguish classes of functions of the outer membrane OmpA protein. Mol. Gen. Genet. 187 148-56 PubMed
  14. ↑ Manning, PA & Reeves, P (1976) Outer membrane of Escherichia coli K-12: differentiation of proteins 3A and 3B on acrylamide gels and further characterization of con (tolG) mutants. J. Bacteriol. 127 1070-9 PubMed
  15. ↑ 15.0 15.1 Manning, PA & Reeves, P (1976) Outer membrane of Escherichia coli K-12: TSX mutants (resistant to bacteriophage T6 and colicin K) lack an outer membrane protein. Biochem. Biophys. Res. Commun. 71 466-71 PubMed
  16. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  17. ↑ 17.0 17.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  18. ↑ 18.0 18.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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