recB:Gene: Difference between revisions

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|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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*  
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{| id="F46a9e70c5599e"  class=" tableEdit Gene_nomenclature_table"   
{|   id="F46a9e70c5599e"  class=" tableEdit Gene_nomenclature_table"   


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!align=left {{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
||
||
''ECK2816, b2820, JW2788, rorA, ior''<ref name='LIB:Riley_2006'/>
''ECK2816, b2820, JW2788, rorA, ior''<ref name='LIB:Riley_2006'/>, ior''


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*  
*  
****************************************************************************************** -->{{Gene_location_help}}
****************************************************************************************** -->{{Gene_location_help}}
{|   id="L46a9e70cd514e"  class=" tableEdit Gene_location_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46a9e70cd514e"  class=" tableEdit Gene_location_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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63.59 minutes&nbsp;
63.59 minutes&nbsp;
|
|
MG1655: 2954025..2950483<br />{{GBrowseFigureByCoord|2950483|2954025|ecoli|MG1655}}
MG1655: 2954025..2950483<br /><gbrowseImage>
name=NC_000913:2950483..2954025
source=MG1655
preset=GeneLocation
</gbrowseImage>
 
|
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*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10824 EcoCyc]
*[http://biocyc.org/ECOLI/NEW-IMAGE?type=LOCUS-POSITION&chromosome=COLI-K12&object=EG10824 EcoCyc]
{{GBrowseLink|ecoli|NC_000913|2949483|2955025|GBrowse(MG1655)}}
{{GBrowseLink|MG1655|NC_000913|2949483|2955025|GBrowse(MG1655)}}
   
   
|
|
{{GBrowseFastaLink|ecoli|NC_000913|2950483|2954025|FASTA Dump}}
{{GBrowseFastaLink|MG1655|NC_000913|2950483|2954025|FASTA Dump}}
*[http://biocyc.org/ECOLI/sequence?object=EG10824 EcoCyc Sequence Dump]  
*[http://biocyc.org/ECOLI/sequence?object=EG10824 EcoCyc Sequence Dump]  
|-  
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NC_012967: 2850622..2847080<br />{{GBrowseFigureByCoord|2847080|2850622|REL606|NC_012967}}
NC_012967: 2850622..2847080<br /><gbrowseImage>
name=NC_012967:2847080..2850622
source=REL606
preset=GeneLocation
</gbrowseImage>
 
|
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{{GBrowseLink|REL606|NC_012967|2847080|2850622|GBrowse (REL606)}}
{{GBrowseLink|REL606|NC_012967|2847080|2850622|GBrowse (REL606)}}
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|
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NC_012759: 2837631..2841173<br />{{GBrowseFigureByCoord|2837631|2841173|BW2952|NC_012759}}
NC_012759: 2837631..2841173<br /><gbrowseImage>
name=NC_012759:2837631..2841173
source=BW2952
preset=GeneLocation
</gbrowseImage>
 
|
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{{GBrowseLink|BW2952|012759|2837631|NC_2841173|GBrowse (BW2952)}}
{{GBrowseLink|BW2952|NC_012759|2837631|2841173|GBrowse (BW2952)}}
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{{GBrowseFastaLink|BW2952|012759|2837631|NC_2841173|FASTA Dump}}  
{{GBrowseFastaLink|BW2952|NC_012759|2837631|2841173|FASTA Dump}}  
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&nbsp;
&nbsp;
|
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W3110: 2954659..2951117<br />{{GBrowseFigureByCoord|2951117|2954659|ecoli_W3110|W3110}}
W3110: 2954659..2951117<br /><gbrowseImage>
name=NC_007779:2951117..2954659
source=W3110
preset=GeneLocation
</gbrowseImage>
 
|
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{{GBrowseLink|ecoli_W3110|AC_000091|2950117|2955659|GBrowse(W3110)}}  
{{GBrowseLink|W3110|NC_007779|2950117|2955659|GBrowse(W3110)}}  
|
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{{GBrowseFastaLink|ecoli_W3110|AC_000091|2951117|2954659|FASTA Dump}}  
{{GBrowseFastaLink|W3110|NC_007779|2951117|2954659|FASTA Dump}}  
|-  
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DH10B: 3047895..3044353<br />{{GBrowseFigureByCoord|3044353|3047895|ecoli_DH10B|DH10B}}
DH10B: 3047895..3044353<br /><gbrowseImage>
name=NC_010473:3044353..3047895
source=DH10B
preset=GeneLocation
</gbrowseImage>
 
|
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{{GBrowseLink|ecoli_DH10B|NC_010473|3037269|3054979|GBrowse(DH10B)}}
{{GBrowseLink|DH10B|NC_010473|3037269|3054979|GBrowse(DH10B)}}
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{{GBrowseFastaLink|ecoli_DH10B|NC_010473|3037269|3054979|FASTA Dump}}  
{{GBrowseFastaLink|DH10B|NC_010473|3037269|3054979|FASTA Dump}}  


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*  
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****************************************************************************************** -->{{Gene_sequence_features_help}}
****************************************************************************************** -->{{Gene_sequence_features_help}}
{|   id="Y46a9e70d912fc"  class=" tableEdit Gene_sequence_features_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Y46a9e70d912fc"  class=" tableEdit Gene_sequence_features_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
|-
|
Coding Start (SO:0000323)
|
[[MG1655]]
|
2950486
|
Edman degradation
|
PMID:1618858<br />
|


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*  
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****************************************************************************************** -->{{Gene_alleles_help}}
****************************************************************************************** -->{{Gene_alleles_help}}
{| {{Prettytable}} id="L46a9e70dd82cb"  class=" tableEdit Gene_allele_table dataTable"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="L46a9e70dd82cb"  class=" tableEdit Gene_allele_table dataTable"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
|-  
|-  
|
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&Delta;recB (Keio:JW2788)
''recB(del)'' (Keio:JW2788)
|
|
deletion
deletion
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PMID:16738554
PMID:16738554
|
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[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]<br>[http://cgsc2.biology.yale.edu/Strain.php?ID=108463 CGSC10182]<ref name='LIB:cgsc'/>  
[http://www.shigen.nig.ac.jp/ecoli/strain/keioCollectionQueryAction.do Shigen]<br />[http://cgsc2.biology.yale.edu/Strain.php?ID=108463 CGSC10182]<ref name='LIB:cgsc'/>  
|
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|-  
|-  
|
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0009249 recB::Tn5KAN]
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0009249 recB::Tn5KAN-I-SceI] (FB20945)
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Insertion at nt 2423 in Minus orientation
|
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PMID:12519969
PMID:15262929
|
|
[[asapstrains:ASAP|ASAP]]
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20945]
|
|
At position 2423 in Minus orientation, contains plasmid  [[pKD46]].<br />ASAP strain name: FB20945
contains [[pKD46]]  
|-  
|-  
|
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[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0009249 recB::Tn5KAN]
[http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0009249 recB::Tn5KAN-I-SceI] (FB20946)
|
|
 
Insertion at nt 2423 in Minus orientation
|
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|
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PMID:12519969
PMID:15262929
|
|
[[asapstrains:ASAP|ASAP]]
[http://www.genome.wisc.edu/resources/forms/strainrequest.htm E. coli Genome Project:FB20946]
|
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At position 2423 in Minus orientation, does not contain plasmid  [[pKD46]].<br />ASAP strain name: FB20946
does not contain [[pKD46]]  
|-  
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''&#916;recB745::kan''
''recB745(del)''::kan
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|-
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recB in [[MDS42]]
|
deletion
|
|
Sensitivity to
|
increases sensitivity to bicyclomycin
|
PMID:21183718
|
|
fig. 2
|-
|
recB
|
deletion
|
|
Sensitivity to
|
decreases sensitivity to [[Bicyclomycin]]
|
PMID:21357484
|
|
fig 2
|-
|
''nrdA101 recB(del)''
|
''recB'' function is deactivated
|
|
Rate of DNA replication
|
When exposed to extreme temperatures the rate of transcription is slightly under restrictive conditions
|
PMID:21441507
|
|
See Figure 2
|-
|
''recB268''::Tn''10''
|
Tn''10'' was inserted into the ''recB'' gene at the allele 268.
|
|
Growth Phenotype
|
the rate of growth was significantly decreased.
|
PMID:9973363
|
|
See figure 1.  The strain background is Hfr3000; called '3000HfrH' in the paper. 
|-
|
SMR6039 ''recB(del)''::Kan
|
Deletion
|
|
SOS response
|
Decrease in spontaneous SOS-induction defective
|
PMID:23224554
|
Parent Strain: SMR6039
Experimental Strain: SMR16024
|
The mutation caused a defect in Spontaneous SOS-Induction. See table S7 for a summary of experimental results. 


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===Notes===
===Notes===


==Genetic Interactions==
{{BacktoTop}}
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.16207.P4e04c225d976d-->
<!--
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="P4e04c225d976d"  class=" tableEdit Genetic_interaction_table dataTable" 
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.16207.P4e04c225d976d&page=16207&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table]</span> || || || || || ||
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.16207.P4e04c225d976d--></protect>
<!-- Genetic Interacdtions Notes -->
===Notes===


==Genetic Resources==
==Genetic Resources==
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{|   id="P46a9e70e938b5"  class=" tableEdit Gene_resource_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="P46a9e70e938b5"  class=" tableEdit Gene_resource_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
!|Resource!!Resource Type!!Source!!Notes/Reference
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Primer 2:CCgGCCTCCTCCAGGGTCATACC  
Primer 2:CCgGCCTCCTCCAGGGTCATACC  
|-
|
[[:Category:Kohara_Phage:10B6|10B6]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=459 Genobase]
|
PMID:3038334
|-
|
[[:Category:Kohara_Phage:3G11|3G11]]
|
Kohara Phage
|
[http://ecoli.aist-nara.ac.jp/GB6/kohara_info.jsp?fword=460 Genobase]
|
PMID:3038334
|-  
|-  
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****************************************************************************************** -->{{Gene_accessions_help}}
{|   id="J46a9e70f37d7f"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J46a9e70f37d7f"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10824 EcoCyc:EG10824]
|
|-
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB0817 EchoBASE:EB0817]
|
|-
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])
|
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[http://chase.ou.edu/macro/searchlink.php?bnum=b2820 EcoliGenExpDB:b2820]
EcoCyc:EG10824
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
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[http://BioCyc.org/ECOL199310/ ECOL199310CYC] ([[ECOL199310CYC|EcoliWiki Page]])
[[EcoGene]]
|
|
[http://BioCyc.org/ECOL199310/new-image?object=C3414 ECOL199310CYC:C3414]
EcoGene:EG10824
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|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
[[RegulonDB]]
|
|
[http://ecogene.org/geneinfo.php?eg_id=EG10824 EcoGene:EG10824]
RegulonDB:ECK120000815
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
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[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
|
[http://BioCyc.org/ECOO157/new-image?object=RECB ECOO157CYC:RECB]
[http://www.ncbi.nlm.nih.gov/gene?term=947286 GeneID:947286]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
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[http://cgsc.biology.yale.edu CGSC] ([[CGSC|EcoliWiki Page]])
[[EchoBASE]]
|
|
[http://cgsc.biology.yale.edu/cgi-bin/sybgw/cgsc/Site/311 CGSC:311]
EchoBASE:EB0817
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
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[https://asap.ahabs.wisc.edu/asap/logon.php ASAP] ([[ASAP|EcoliWikiPage]])
[[ASAP]]
|
|
[http://asap.ahabs.wisc.edu/asap/feature_info.php?LocationID=WIS&FeatureID=0009249&formSubmitReturn=1 ASAP:ABE-0009249]
ASAP:ABE-0009249
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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{|   id="L46a7035138a9d"  class=" tableEdit Links_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46a7035138a9d"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
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!|Name!!URL!!Comments
!|Name!!URL!!Comments

Latest revision as of 20:44, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

recB

Mnemonic

Recombination

Synonyms

ECK2816, b2820, JW2788, rorA, ior[1], ior

edit table


Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

63.59 minutes 

MG1655: 2954025..2950483
<gbrowseImage> name=NC_000913:2950483..2954025 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 2850622..2847080
<gbrowseImage> name=NC_012967:2847080..2850622 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 2837631..2841173
<gbrowseImage> name=NC_012759:2837631..2841173 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 2954659..2951117
<gbrowseImage> name=NC_007779:2951117..2954659 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 3047895..3044353
<gbrowseImage> name=NC_010473:3044353..3047895 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

2950486

Edman degradation

PMID:1618858[2]


edit table


Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

recB(del) (Keio:JW2788)

deletion

deletion

PMID:16738554[3]

Shigen
CGSC10182[4]

recB::Tn5KAN-I-SceI (FB20945)

Insertion at nt 2423 in Minus orientation

PMID:15262929[5]

E. coli Genome Project:FB20945

contains pKD46

recB::Tn5KAN-I-SceI (FB20946)

Insertion at nt 2423 in Minus orientation

PMID:15262929[5]

E. coli Genome Project:FB20946

does not contain pKD46

recB21

CGSC:4677

recB270(ts)

temperature sensitive

CGSC:8994

recB1067(D1067A)

PMID:9790841[6]

CGSC:71962

recB1080(D1080A)

PMID:11532156[7]

CGSC:72006

recB1082(K1082Q)

PMID:9790841[6]

CGSC:72009

recB60

CGSC:84445

recB745(del)::kan

PMID:16738554[3]

CGSC:102622

recB in MDS42

deletion

Sensitivity to

increases sensitivity to bicyclomycin

PMID:21183718[8]

fig. 2

recB

deletion

Sensitivity to

decreases sensitivity to Bicyclomycin

PMID:21357484[9]

fig 2

nrdA101 recB(del)

recB function is deactivated

Rate of DNA replication

When exposed to extreme temperatures the rate of transcription is slightly under restrictive conditions

PMID:21441507[10]

See Figure 2

recB268::Tn10

Tn10 was inserted into the recB gene at the allele 268.

Growth Phenotype

the rate of growth was significantly decreased.

PMID:9973363[11]

See figure 1. The strain background is Hfr3000; called '3000HfrH' in the paper.

SMR6039 recB(del)::Kan

Deletion

SOS response

Decrease in spontaneous SOS-induction defective

PMID:23224554[12]

Parent Strain: SMR6039 Experimental Strain: SMR16024

The mutation caused a defect in Spontaneous SOS-Induction. See table S7 for a summary of experimental results.

edit table


Notes

Genetic Interactions

[back to top]



Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
edit table


Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW2788

Plasmid clone

Shigen

PMID:16769691[13]

Status:Clone OK

Primer 1:GCCAGTGATGTCGCCGAGACACT

Primer 2:CCgGCCTCCTCCAGGGTCATACC

10B6

Kohara Phage

Genobase

PMID:3038334[14]

3G11

Kohara Phage

Genobase

PMID:3038334[14]

fucP3072::Tn10

Linked marker

CAG12079 = CGSC7427[4]

est. P1 cotransduction: 52% [15]
Synonyms:fuc-3072::Tn10

recD1901::Tn10

Linked marker

CAG12135 = CGSC7429[4]

est. P1 cotransduction: 99% [15]

edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10824

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10824

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000815

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:947286

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0817

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009249

Escherichia coli str. K-12 substr. MG1655

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  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ Masterson, C et al. (1992) Reconstitution of the activities of the RecBCD holoenzyme of Escherichia coli from the purified subunits. J. Biol. Chem. 267 13564-72 PubMed
  3. ↑ 3.0 3.1 Baba, T et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2 2006.0008 PubMed
  4. ↑ 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
  5. ↑ 5.0 5.1 Kang, Y et al. (2004) Systematic mutagenesis of the Escherichia coli genome. J. Bacteriol. 186 4921-30 PubMed
  6. ↑ 6.0 6.1 Yu, M et al. (1998) Identification of the nuclease active site in the multifunctional RecBCD enzyme by creation of a chimeric enzyme. J. Mol. Biol. 283 797-808 PubMed
  7. ↑ Jockovich, ME & Myers, RS (2001) Nuclease activity is essential for RecBCD recombination in Escherichia coli. Mol. Microbiol. 41 949-62 PubMed
  8. ↑ Washburn, RS & Gottesman, ME (2011) Transcription termination maintains chromosome integrity. Proc. Natl. Acad. Sci. U.S.A. 108 792-7 PubMed
  9. ↑ Tran, L et al. (2011) Single-gene deletion mutants of Escherichia coli with altered sensitivity to bicyclomycin, an inhibitor of transcription termination factor Rho. J. Bacteriol. 193 2229-35 PubMed
  10. ↑ Salguero, I et al. (2011) RecA-dependent replication in the nrdA101(Ts) mutant of Escherichia coli under restrictive conditions. J. Bacteriol. 193 2851-60 PubMed
  11. ↑ Dermić, D & Trgovcević, Z (1999) Specific effects of a recB mutation on the HfrH strain of Escherichia coli. J. Bacteriol. 181 1334-7 PubMed
  12. ↑ Al Mamun, AA et al. (2012) Identity and function of a large gene network underlying mutagenic repair of DNA breaks. Science 338 1344-8 PubMed
  13. ↑ Kitagawa, M et al. (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 291-9 PubMed
  14. ↑ 14.0 14.1 Kohara, Y et al. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50 495-508 PubMed
  15. ↑ 15.0 15.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

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