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Standard Name	yahI
Gene Synonym(s)	ECK0321, b0323, JW0315^[1], JW0315
Product Desc.	predicted carbamate kinase-like protein^[2]^[3] Carbonate kinase homolog, function unknown^[4]
Product Synonyms(s)	predicted carbamate kinase-like protein^[1], B0323^[2]^[1], YahI^[2]^[1] , ECK0321, JW0315, b0323
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): yahI^[2]
Regulation/Activity
Quick Links
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Notes

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yqeA, yahI and ybcF are paralogs. AFMB Structural Genomics target No. 76 (http://afmb.cnrs-mrs.fr/article171.html).^[4]

Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	yahI
Mnemonic	Systematic nomenclature
Synonyms	ECK0321, b0323, JW0315^[1], JW0315
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	7.31 minutes	MG1655: 339389..340339 <gbrowseImage> name=NC_000913:339389..340339 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 312814..313764 <gbrowseImage> name=NC_012967:312814..313764 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
W3110		W3110: 339389..340339 <gbrowseImage> name=NC_007779:339389..340339 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Reference	Availability	Comments
yahI(del) (Keio:JW0315)	deletion	deletion	PMID:16738554	Shigen CGSC8514^[5]
yahI::Tn5KAN-I-SceI (FB20145)	Insertion at nt 487 in Plus orientation		PMID:15262929	E. coli Genome Project:FB20145	does not contain pKD46
yahI::Tn5KAN-I-SceI (FB20146)	Insertion at nt 487 in Plus orientation		PMID:15262929	E. coli Genome Project:FB20146	contains pKD46
yahI765(del)::kan			PMID:16738554	CGSC:103574
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW0315	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCAAAGAGCTTGTGGTCGTTGC Primer 2:CCCGTTTTAATAATATGAGTGCC
1F6	Kohara Phage	Genobase	PMID:3038334
proA81::Tn10	Linked marker	CAG18447 = CGSC7330^[5]	est. P1 cotransduction: % ^[6]
lacI3042::Tn10	Linked marker	CAG18439 = CGSC7334^[5]	est. P1 cotransduction: 35% ^[6] Synonyms:lacI42::Tn10 nnnCAG18439 also carries lacZ118(0c) (CGSC).
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G6188	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13593	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120002806	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:944984	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3362	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0001107	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	YahI
Synonyms	predicted carbamate kinase-like protein^[1], B0323^[2]^[1], YahI^[2]^[1] , ECK0321, JW0315, b0323
Product description	predicted carbamate kinase-like protein^[2]^[3] Carbonate kinase homolog, function unknown^[4]
EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0006525	arginine metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003964	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008652	cellular amino acid biosynthetic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001048	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008804	carbamate kinase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR003964	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016301	kinase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0418	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016740	transferase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0808	F	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	nadE	PMID:16606699	Experiment(s):EBI-1136229
Protein	malZ	PMID:16606699	Experiment(s):EBI-1136229
Protein	cspD	PMID:16606699	Experiment(s):EBI-1136229
Protein	groL	PMID:16606699	Experiment(s):EBI-1136229
Protein	speG	PMID:16606699	Experiment(s):EBI-1136229
Protein	ahpC	PMID:16606699	Experiment(s):EBI-1136229
Protein	ybaB	PMID:16606699	Experiment(s):EBI-1136229
Protein	rpsI	PMID:16606699	Experiment(s):EBI-1136229
Protein	def	PMID:16606699	Experiment(s):EBI-1136229
Protein	zwf	PMID:16606699	Experiment(s):EBI-1136229
Protein	rpmE	PMID:16606699	Experiment(s):EBI-1136229
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MKELVVVAIG GNSIIKDNAS QSIEHQAEAV KAVADTVLEM LASDYDIVLT HGNGPQVGLD LRRAEIAHKR EGLPLTPLAN CVADTQGGIG YLIQQALNNR LARHGEKKAV TVVTQVEVDK NDPGFAHPTK PIGAFFSDSQ RDELQKANPD WCFVEDAGRG YRRVVASPEP KRIVEAPAIK ALIQQGFVVI GAGGGGIPVV RTDAGDYQSV DAVIDKDLST ALLAREIHAD ILVITTGVEK VCIHFGKPQQ QALDRVDIAT MTRYMQEGHF PPGSMLPKII ASLTFLEQGG KEVIITTPEC LPAALRGETG THIIKT
Length	316
Mol. Wt	33.93 kDa
pI	6.0 (calculated)
Extinction coefficient	12,950 - 13,450 (calc based on 5 Y, 1 W, and 4 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	3..297	PF00696 Amino acid kinase family		PMID:19920124
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yahI taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16128308	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:944984	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0001107	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P77624	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:G6188	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13593	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:944984	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120002806	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3362	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	E. coli K-12 MC4100	1.47E+02	molecules/cell	Medium: median data from rich and minimal media Temperature (°C): 37 Doubling time (min): Growth Rate(min): Growth phase: other:	emPAI		PMID:18304323
Protein	E. coli K-12 MG1655	5^a	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
Protein	E. coli K-12 MG1655	3^a	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
Protein	E. coli K-12 MG1655	0^a	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
yahI
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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:339369..339409 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b0323 (EcoliWiki Page)	NCBI GEO profiles for yahI
microarray	GenExpDB:b0323 (EcoliWiki Page)	Summary of data for yahI from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
	GFP Fusion	Intergenic region (339051..339399) fused to gfpmut2.	OpenBioSystems	GFP fusion described in Zaslaver, et al. Plate:109-AZ11; Well:F6^[7]
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Notes

Accessions Related to yahI Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:G6188	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3362	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b0323
EcoGene	EcoGene:EG13593	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120002806	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0001107	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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<protect> See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF00696 Amino acid kinase family
Superfamily (EcoliWiki Page)	SUPERFAMILY:53633
EcoCyc	EcoCyc:G6188	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13593	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120002806	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB3362	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0001107	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 ^1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 CGSC: The Coli Genetics Stock Center
↑ ^6.0 ^6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

yahI:On One Page

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Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to yahI Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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