uvrA:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

uvrA

Gene Synonym(s)

ECK4050, b4058, JW4019, dar, dinE[1]

Product Desc.

excision nuclease subunit A[2][3];

Component of UvrABC Nucleotide Excision Repair Complex[2][3]

Excision nuclease subunit A; repair of UV damage to DNA; LexA regulon; binds Zn(II)[4]

Product Synonyms(s)

ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC[1], B4058[2][1], Dar[2][1], DinE[2][1], UvrA[2][1] , dar, ECK4050, JW4019, b4058

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): uvrA[2], OP00097

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

uvrA

Mnemonic

Ultraviolet resistant

Synonyms

ECK4050, b4058, JW4019, dar, dinE[1]

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

92.01 minutes, 92.01 minutes 

MG1655: 4271894..4269072
<gbrowseImage> name=NC_000913:4269072..4271894 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 4252803..4249981
<gbrowseImage> name=NC_012967:4249981..4252803 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 4207917..4210739
<gbrowseImage> name=NC_012759:4207917..4210739 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 4277461..4274639
<gbrowseImage> name=NC_007779:4274639..4277461 source=W3110 preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

4269072

Edman degradation

PMID:3007478


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

Strain DH10B

V332L

Nonsynonomous mutation

PMID:18245285

ASAP

This is a SNP in E. coli K-12 Strain DH10B

uvrA(del) (Keio:JW4019)

deletion

deletion

PMID:16738554

Shigen

CGSC10889[5]

uvrAC253A,H,S

C253A,H,S

Reduced activity

seeded from UniProt:P0A698

uvrA6

Sensitivity to

Mutation increases sensitivity to UV-radiation

PMID:5335128

CGSC:4736

Figure 5

Strain AB1157

uvrA157

CGSC:4765

uvrA103

CGSC:7745

uvrA155

CGSC:8494

uvrA277::Tn10

CGSC:8866

uvrA37

Sensitivity to

Mutation increases sensitivity to UV-radiation

PMID:5335128

CGSC:9254

Figure 5

Strain Hfr J2

uvrA14

CGSC:9283

uvrA18

CGSC:9291

uvrA19

CGSC:9293

uvrA281

CGSC:10632

uvrA154

CGSC:11960

uvrA0

CGSC:17383

uvrA215::Mud(Ap,lac)

PMID:6771759 PMID:6780917

CGSC:67398

uvrA753(del)::kan

PMID:16738554

CGSC:103342

uvrA(del)::Tn10

deletion

deletion

Sensitivity to

Deletion mutants are more sensitive to DNA damaging agent Mitomycin C, fig 1 & 2.

PMID:17040104

Experimental strain:GY5564

uvrA::Tn10 uvrC34

Sensitivity to

Double mutation increased sensitivity to mitomycin C but at a slower rate than single deletions.

PMID:17040104

Strain:

See Figure 1.

uvrA(del)

deletion

deletion

Sensitivity to

Deletion mutation causes hypersensitive to UV when irradiated and incubated in non-photoreactivating conditions, fig 2.

PMID:16970815

figure 2

uvrA K689A

Lysine to Alanine

change in binding affinity

Mutation caused a decrease in binding affinity to DNA, table 1.

PMID:18248777

uvrA K680E

Lysine to Glutamic Acid

Change in binding affinity

Mutation caused a decrease in binding affinity to DNA, table 1.

PMID:18248777

uvrA R691A

Arginine to Alanine

Change in DNA binding affinity

Mutation caused a decrease in binding affinity to DNA, table 1.

PMID:18248777

uvrA R691D

Arginine to Aspartic Acid

Change in binding affinity

Mutation caused a decrease in binding affinity to DNA, table 1.

PMID:18248777

uvrA K680A R691A

Lysine to Alanine & Arginine to Alanine

Change in binding affinity

Double mutation caused a decrease in binding affinity to DNA more than single point mutations, table 1.

PMID:18248777

uvrA::Tn10 uvrC34

DNA repair

Double mutation was able to recover high molecular weight DNA, though at a much slower rate than wild type.

PMID:17040104

Figure 4

uvrAB K45A

Lysine to alanine

change in enzyme activity

ATP hydrolysis of uvrB by ATPase is inhibited (but not of uvrA in the complex). Table 1.

PMID:17630776

ZnG uvrA

11 amino acid change, figure 1.

DNA binding

Mutant shows decreased binding affinity to damaged DNA, table 1.

PMID:16829526

uvrA G502D V508D

Glycine to Aspartic Acid & Valine to Aspartic Acid

Sensitivity to

Mutation increases sensitivity to UV-radiation by causing the loss of uvrA's binding specificity between damaged and undamaged DNA. Figure 7.

PMID:8444906

Figure 7

Parent Strain: MH1-∆A

uvrA G275A

Glycine to Alanine

Resistant to

Mutation creates "hyper" UV resistance greater than the UV resistance of wild type, figure 4.

PMID:8444906

Figure 4

uvrA C763F

Cysteine to Phenylalanine

Change in DNA binding

Mutation causes loss of single-stranded DNA-binding activity.

PMID:8444906

No data shown

Parent Strain: MH1-A(del)

uvrA C740F H754Y C742Y/K750I

Cysteine to Phenylalanine & Histidine to Tyrosine & Cysteine to Tyrosine/Lysine to Isoleucine (double mutant)

Sensitivity to

Mutation increased UV sensitivity by making the mutant proteins excision repair defective

PMID:8444906

No data shown in source.

Parent Strain: MH1-A(del)

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW4019

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCGATAAGATCGAAGTTCGGGG

Primer 2:CCaAGCATCGGCTTAAGGAAGCG

12D1

Kohara Phage

Genobase

PMID:3038334

3F12

Kohara Phage

Genobase

PMID:3038334

malF3089::Tn10

Linked marker

CAG12164 = CGSC7476[5]

est. P1 cotransduction: 33% [6]

zje-2241::Tn10

Linked marker

CAG18427 = CGSC7481[5]

est. P1 cotransduction: 22% [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11061

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11061

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001050

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948559

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1054

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013290

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

UvrA

Synonyms

ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC[1], B4058[2][1], Dar[2][1], DinE[2][1], UvrA[2][1] , dar, ECK4050, JW4019, b4058

Product description

excision nuclease subunit A[2][3];

Component of UvrABC Nucleotide Excision Repair Complex[2][3]

Excision nuclease subunit A; repair of UV damage to DNA; LexA regulon; binds Zn(II)[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00205

F

Seeded from EcoCyc (v14.0)

complete

GO:0003677

DNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0238

F

Seeded from EcoCyc (v14.0)

complete

GO:0004518

nuclease activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0267

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00205

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003439

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017871

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00205

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006281

DNA repair

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00205

P

Seeded from EcoCyc (v14.0)

complete

GO:0006281

DNA repair

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0228

P

Seeded from EcoCyc (v14.0)

complete

GO:0006281

DNA repair

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0234

P

Seeded from EcoCyc (v14.0)

complete

GO:0006289

nucleotide-excision repair

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00205

P

Seeded from EcoCyc (v14.0)

complete

GO:0006289

nucleotide-excision repair

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004602

P

Seeded from EcoCyc (v14.0)

complete

GO:0006974

response to DNA damage stimulus

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0227

P

Seeded from EcoCyc (v14.0)

complete

GO:0008270

zinc ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0862

F

Seeded from EcoCyc (v14.0)

complete

GO:0009380

excinuclease repair complex

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004602

C

Seeded from EcoCyc (v14.0)

complete

GO:0009381

excinuclease ABC activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00205

F

Seeded from EcoCyc (v14.0)

complete

GO:0009381

excinuclease ABC activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004602

F

Seeded from EcoCyc (v14.0)

complete

GO:0009432

SOS response

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00205

P

Seeded from EcoCyc (v14.0)

complete

GO:0009432

SOS response

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0742

P

Seeded from EcoCyc (v14.0)

complete

GO:0016887

ATPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003439

F

Seeded from EcoCyc (v14.0)

complete

GO:0016887

ATPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017871

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of UvrABC Nucleotide Excision Repair Complex

could be indirect

Protein

narG

PMID:16606699

Experiment(s):EBI-1147356

Protein

narZ

PMID:16606699

Experiment(s):EBI-1147356

Protein

dnaK

PMID:16606699

Experiment(s):EBI-1147356
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MDKIEVRGAR THNLKNINLV IPRDKLIVVT GLSGSGKSSL AFDTLYAEGQ RRYVESLSAY
ARQFLSLMEK PDVDHIEGLS PAISIEQKST SHNPRSTVGT ITEIHDYLRL LFARVGEPRC
PDHDVPLAAQ TVSQMVDNVL SQPEGKRLML LAPIIKERKG EHTKTLENLA SQGYIRARID
GEVCDLSDPP KLELQKKHTI EVVVDRFKVR DDLTQRLAES FETALELSGG TAVVADMDDP
KAEELLFSAN FACPICGYSM RELEPRLFSF NNPAGACPTC DGLGVQQYFD PDRVIQNPEL
SLAGGAIRGW DRRNFYYFQM LKSLADHYKF DVEAPWGSLS ANVHKVVLYG SGKENIEFKY
MNDRGDTSIR RHPFEGVLHN MERRYKETES SAVREELAKF ISNRPCASCE GTRLRREARH
VYVENTPLPA ISDMSIGHAM EFFNNLKLAG QRAKIAEKIL KEIGDRLKFL VNVGLNYLTL
SRSAETLSGG EAQRIRLASQ IGAGLVGVMY VLDEPSIGLH QRDNERLLGT LIHLRDLGNT
VIVVEHDEDA IRAADHVIDI GPGAGVHGGE VVAEGPLEAI MAVPESLTGQ YMSGKRKIEV
PKKRVPANPE KVLKLTGARG NNLKDVTLTL PVGLFTCITG VSGSGKSTLI NDTLFPIAQR
QLNGATIAEP APYRDIQGLE HFDKVIDIDQ SPIGRTPRSN PATYTGVFTP VRELFAGVPE
SRARGYTPGR FSFNVRGGRC EACQGDGVIK VEMHFLPDIY VPCDQCKGKR YNRETLEIKY
KGKTIHEVLD MTIEEAREFF DAVPALARKL QTLMDVGLTY IRLGQSATTL SGGEAQRVKL
ARELSKRGTG QTLYILDEPT TGLHFADIQQ LLDVLHKLRD QGNTIVVIEH NLDVIKTADW
IVDLGPEGGS GGGEILVSGT PETVAECEAS HTARFLKPML
Length

940

Mol. Wt

103.869 kDa

pI

6.6 (calculated)

Extinction coefficient

53,750 - 55,500 (calc based on 25 Y, 3 W, and 14 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

647..861

PF00005 ABC transporter

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=uvrA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16131884

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948559

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013290

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A698

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11061

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11061

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948559

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001050

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1054

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

3.22E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

4.904+/-0.038

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.041814316

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

621

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

206

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

308

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

uvrA

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:4271874..4271914 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b4058 (EcoliWiki Page)

NCBI GEO profiles for uvrA

microarray

GenExpDB:b4058 (EcoliWiki Page)

Summary of data for uvrA from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (4271368..4271753) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ02; Well:B7[7]

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Notes

Accessions Related to uvrA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11061

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1054

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b4058

EcoGene

EcoGene:EG11061

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001050

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013290

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Xenopus tropicalis

  • ENSXETP00000041853 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

UVRA

From SHIGELLACYC

E. coli O157

UVRA

From ECOO157CYC

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Notes

Families

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Database Accession Notes

Pfam (EcoliWiki Page)

PF00005 ABC transporter

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Panther (EcoliWiki Page)

PTHR24220:SF103

EcoCyc

EcoCyc:EG11061

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11061

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001050

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1054

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013290

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

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