trxA:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

trxA

Gene Synonym(s)

ECK3773, b3781, JW5856, fipA, tsnC, dasC[1], dasC

Product Desc.

oxidized thioredoxin[2][3]

Thioredoxin 1; Trx; with TrxB, also has general chaperone activity; processivity factor for phage T7 gene 5 DNA polymerase[4]

Product Synonyms(s)

thioredoxin 1[1], B3781[2][1], DasC[2][1], TsnC[2][1], FipA[2][1], thioredoxin(S)2[2][1] , dasC, ECK3773, fipA, JW5856, tsnC, b3781

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): trxA[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

trxA

Mnemonic

Thioredoxin

Synonyms

ECK3773, b3781, JW5856, fipA, tsnC, dasC[1], dasC

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

85.43 minutes, 85.43 minutes 

MG1655: 3963784..3964113
<gbrowseImage> name=NC_000913:3963784..3964113 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 3927561..3927890
<gbrowseImage> name=NC_012967:3927561..3927890 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 3853453..3853782
<gbrowseImage> name=NC_012759:3853453..3853782 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 3670920..3670591
<gbrowseImage> name=NC_007779:3670591..3670920 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 4062704..4063033
<gbrowseImage> name=NC_010473:4062704..4063033 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

3963787

Edman degradation

PMID:4883076


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔtrxA (Keio:JW5856)

deletion

deletion

PMID:16738554

Shigen

trxA1(Am)

PMID:337124 PMID:3881756

CGSC:5031

amber (UAG) mutation

ΔtrxA307

CGSC:10957

trxA11(ts)

temperature sensitive

PMID:3881756

CGSC:88597

trxA

deletion

Sensitivity to

increases sensitivity to bicyclomycin

PMID:21357484

fig 2

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW5856

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAGCGATAAAATTATTCACCT

Primer 2:CCtGCCAGGTTAGCGTCGAGGAA

7B1

Kohara Phage

Genobase

PMID:3038334

2A8

Kohara Phage

Genobase

PMID:3038334

ilvD500::Tn10

Linked marker

CAG18431 = CGSC7462[5]

est. P1 cotransduction: 69% [6]
Synonyms:ilv500::Tn10

metEo-3079::Tn10

Linked marker

CAG18491 = CGSC7464[5]

est. P1 cotransduction: 14% [6]
Synonyms:metE3079::Tn10 nnnThe Tn10 in CAG13491 is inserted in the metE regulatory region, but causes a Met- phenotype.

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11031

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11031

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001020

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:948289

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1024

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012357

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

TrxA

Synonyms

thioredoxin 1[1], B3781[2][1], DasC[2][1], TsnC[2][1], FipA[2][1], thioredoxin(S)2[2][1] , dasC, ECK3773, fipA, JW5856, tsnC, b3781

Product description

oxidized thioredoxin[2][3]

Thioredoxin 1; Trx; with TrxB, also has general chaperone activity; processivity factor for phage T7 gene 5 DNA polymerase[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology

oxidized thioredoxin

See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0006662

glycerol ether metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005746

P

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc (v14.0)

complete

GO:0009055

electron carrier activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005746

F

Seeded from EcoCyc (v14.0)

complete

GO:0015035

protein disulfide oxidoreductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005746

F

Seeded from EcoCyc (v14.0)

complete

GO:0022900

electron transport chain

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0249

P

Seeded from EcoCyc (v14.0)

complete

GO:0044419

interspecies interaction between organisms

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0945

P

Seeded from EcoCyc (v14.0)

complete

GO:0045454

cell redox homeostasis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR005746

P

Seeded from EcoCyc (v14.0)

complete

GO:0045454

cell redox homeostasis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006662

P

Seeded from EcoCyc (v14.0)

complete

GO:0045454

cell redox homeostasis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013766

P

Seeded from EcoCyc (v14.0)

complete

GO:0045454

cell redox homeostasis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015467

P

Seeded from EcoCyc (v14.0)

complete

GO:0045454

cell redox homeostasis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017936

P

Seeded from EcoCyc (v14.0)

complete

GO:0045454

cell redox homeostasis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017937

P

Seeded from EcoCyc (v14.0)

complete

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Interactions

oxidized thioredoxin

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

fdoG

PMID:15004283

Interaction isolated from total cell lysates

Protein

pykA

PMID:15004283

Interaction isolated from total cell lysates

Protein

acnB

PMID:15004283

Interaction isolated from freeze-thaw treatment in detergent, freeze-thaw treatment in Tris-EDTA & total cell lysates

Protein

icd

PMID:15004283

Interaction isolated from freeze-thaw treatment in Tris-EDTA & total cell lysates

Protein

katG

PMID:15004283

Interaction isolated from freeze-thaw treatment in detergent

Protein

sodA

PMID:15004283

Interaction isolated from total cell lysates

Protein

putA

PMID:15004283

Interaction isolated from total cell lysates

Protein

lamB

PMID:15004283

Interaction isolated from freeze-thaw treatment in detergent

Protein

rbsB

PMID:15004283

Interaction isolated from total cell lysates

Protein

sdaB

PMID:15004283

Interaction isolated from freeze-thaw treatment in Tris-EDTA

Protein

lacZ

PMID:15004283

Interaction isolated from freeze-thaw treatment in Tris-EDTA & total cell lysates

Protein

nrdD

PMID:15004283

Interaction isolated from total cell lysates

Protein

nrdA

PMID:15004283

Interaction isolated from total cell lysates

Protein

fadB

PMID:15004283

Interaction isolated from total cell lysates

Protein

add

PMID:15004283

Interaction isolated from freeze-thaw treatment in Tris-EDTA

Protein

tdk

PMID:15004283

Interaction isolated from total cell lysates

Protein

udp

PMID:15004283

Interaction isolated from total cell lysates

Protein

sthA

PMID:15004283

Interaction isolated from freeze-thaw treatment in Tris-EDTA & total cell lysates

Protein

ompF

PMID:15004283

Interaction isolated from freeze-thaw treatment in detergent

Protein

ompC

PMID:15004283

Interaction isolated from freeze-thaw treatment in Tris-EDTA

Protein

prc

PMID:15004283

Interaction isolated from total cell lysates

Protein

glmM

PMID:15004283

Interaction isolated from total cell lysates

Protein

flu

PMID:15004283

Interaction isolated from freeze-thaw treatment in detergent

Protein

yjiA

PMID:15004283

Interaction isolated from freeze-thaw treatment in Tris-EDTA

Protein

yqaB

PMID:15004283

Interaction isolated from freeze-thaw treatment in Tris-EDTA

Protein

mqo

PMID:15004283

Interaction isolated from freeze-thaw treatment in Tris-EDTA & total cell lysates

Protein

yebE

PMID:15004283

Interaction isolated from total cell lysates

Protein

obgE

PMID:15004283

Interaction isolated from total cell lysates

Protein

dnaN

PMID:19402753

MALDI(Z-score):25.219947

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MRITIILVAP ARAENIGAAA RAMKTMGFSD LRIVDSQAHL EPATRWVAHG SGDIIDNIKV
FPTLAESLHD VDFTVATTAR SRAKYHYYAT PVELVPLLEE KSSWMSHAAL VFGREDSGLT
NEELALADVL TGVPMVADYP SLNLGQAVMV YCYQLATLIQ QPAKSDATAD QHQLQALRER
AMTLLTTLAV ADDIKLVDWL QQRLGLLEQR DTAMLHRLLH DIEKNITK
Length

228

Mol. Wt

25.259 kDa

pI

5.9 (calculated)

Extinction coefficient

25,440 - 25,565 (calc based on 6 Y, 3 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0AA25

Domain

4..107

PF00085 Thioredoxin

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=trxA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:67005950

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948289

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012357

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AA25

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11031

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11031

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948289

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001020

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1024

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

2.66E+03

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

Ecoli K-12

375.299+/-5.54

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.18986+/-0.0242

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by FISH

PMID:20671182

mRNA

Ecoli K-12

1.063829787

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

34622

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

9265

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

14614

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

trxA

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:3963764..3963804 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b3781 (EcoliWiki Page)

NCBI GEO profiles for trxA

microarray

GenExpDB:b3781 (EcoliWiki Page)

Summary of data for trxA from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (3963176..3963341) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ18; Well:B9[7]

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Notes

Accessions Related to trxA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11031

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1024

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b3781

EcoGene

EcoGene:EG11031

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001020

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012357

Escherichia coli str. K-12 substr. MG1655

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Notes

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000027639 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000012348 (score: 1.000; bootstrap: 60%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G03680 (score: 1.000; bootstrap: 90%)
  • AT4G03520 (score: 0.649)
  • AT3G15360 (score: 0.219)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000000014 (score: 1.000; bootstrap: 63%)
  • ENSBTAP00000033144 (score: 0.494)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00031142 (score: 1.000; bootstrap: 55%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00007099 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000002247 (score: 1.000; bootstrap: 59%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000013356 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-1795 (score: 1.000; bootstrap: 62%)
  • ZDB-CDNA-040425-2735 (score: 1.000; bootstrap: 62%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0185040 (score: 1.000; bootstrap: 49%)
  • DDB0186269 (score: 1.000; bootstrap: 50%)
  • DDB0191909 (score: 1.000; bootstrap: 51%)
  • DDB0217531 (score: 0.064)
  • DDB0231409 (score: 0.051)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0029752 (score: 1.000; bootstrap: 73%)
  • FBgn0040070 (score: 0.198)
  • FBgn0036442 (score: 0.084)
  • FBgn0011761 (score: 0.080)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17324-PA (score: 1.000; bootstrap: 65%)
  • GA16546-PA (score: 0.174)
  • GA12311-PA (score: 0.140)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000020444 (score: 1.000; bootstrap: 56%)
  • ENSGALP00000020443 (score: 0.118)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000216185 (score: 1.000; bootstrap: 57%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000016897 (score: 1.000; bootstrap: 81%)
  • ENSMMUP00000028455 (score: 0.069)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000000995 (score: 1.000; bootstrap: 64%)

From Inparanoid:20070104

Mus musculus

  • MGI:1929468 (score: 1.000; bootstrap: 65%)

From Inparanoid:20070104

Oryza gramene

  • Q9ZP20 (score: 1.000; bootstrap: 81%)
  • Q5NDA6 (score: 0.575)
  • Q9ZP21 (score: 0.575)
  • Q41864 (score: 0.517)
  • Q6H7E4 (score: 0.146)
  • Q7X8R5 (score: 0.129)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000020036 (score: 1.000; bootstrap: 56%)
  • ENSPTRP00000039310 (score: 0.068)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000007537 (score: 1.000; bootstrap: 64%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLR043C (score: 1.000; bootstrap: 80%)
  • YGR209C (score: 0.674)
  • YCR083W (score: 0.217)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC7D47c (score: 1.000; bootstrap: 68%)
  • SPBC12D127c (score: 0.116)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000134638 (score: 1.000; bootstrap: 70%)
  • NEWSINFRUP00000132572 (score: 0.083)
  • NEWSINFRUP00000171508 (score: 0.070)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00023150001 (score: 1.000; bootstrap: 73%)
  • GSTENP00029198001 (score: 0.056)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000000504 (score: 1.000; bootstrap: 70%)

From Inparanoid:20070104

Shigella flexneri

TRXA

From SHIGELLACYC

E. coli O157

TRXA

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:52833

Pfam (EcoliWiki Page)

PF00085 Thioredoxin

EcoCyc

EcoCyc:EG11031

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11031

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001020

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1024

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012357

Escherichia coli str. K-12 substr. MG1655

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References

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  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

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