trxA:Gene Product(s)
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Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Standard name |
TrxA |
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Synonyms |
thioredoxin 1[1], B3781[2][1], DasC[2][1], TsnC[2][1], FipA[2][1], thioredoxin(S)2[2][1] , dasC, ECK3773, fipA, JW5856, tsnC, b3781 |
Product description |
Thioredoxin 1; Trx; with TrxB, also has general chaperone activity; processivity factor for phage T7 gene 5 DNA polymerase[4] |
EC number (for enzymes) |
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Notes
Function
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Gene Ontology
oxidized thioredoxin
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
---|---|---|---|---|---|---|---|---|
GO:0006662 |
glycerol ether metabolic process |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0006810 |
transport |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0009055 |
electron carrier activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0015035 |
protein disulfide oxidoreductase activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0022900 |
electron transport chain |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0044419 |
interspecies interaction between organisms |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0045454 |
cell redox homeostasis |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0045454 |
cell redox homeostasis |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0045454 |
cell redox homeostasis |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0045454 |
cell redox homeostasis |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0045454 |
cell redox homeostasis |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0045454 |
cell redox homeostasis |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
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Interactions
oxidized thioredoxin
See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Partner Type | Partner | Notes | References | Evidence |
---|---|---|---|---|
Protein |
fdoG |
Interaction isolated from total cell lysates | ||
Protein |
pykA |
Interaction isolated from total cell lysates | ||
Protein |
acnB |
Interaction isolated from freeze-thaw treatment in detergent, freeze-thaw treatment in Tris-EDTA & total cell lysates | ||
Protein |
icd |
Interaction isolated from freeze-thaw treatment in Tris-EDTA & total cell lysates | ||
Protein |
katG |
Interaction isolated from freeze-thaw treatment in detergent | ||
Protein |
sodA |
Interaction isolated from total cell lysates | ||
Protein |
putA |
Interaction isolated from total cell lysates | ||
Protein |
lamB |
Interaction isolated from freeze-thaw treatment in detergent | ||
Protein |
rbsB |
Interaction isolated from total cell lysates | ||
Protein |
sdaB |
Interaction isolated from freeze-thaw treatment in Tris-EDTA | ||
Protein |
lacZ |
Interaction isolated from freeze-thaw treatment in Tris-EDTA & total cell lysates | ||
Protein |
nrdD |
Interaction isolated from total cell lysates | ||
Protein |
nrdA |
Interaction isolated from total cell lysates | ||
Protein |
fadB |
Interaction isolated from total cell lysates | ||
Protein |
add |
Interaction isolated from freeze-thaw treatment in Tris-EDTA | ||
Protein |
tdk |
Interaction isolated from total cell lysates | ||
Protein |
udp |
Interaction isolated from total cell lysates | ||
Protein |
sthA |
Interaction isolated from freeze-thaw treatment in Tris-EDTA & total cell lysates | ||
Protein |
ompF |
Interaction isolated from freeze-thaw treatment in detergent | ||
Protein |
ompC |
Interaction isolated from freeze-thaw treatment in Tris-EDTA | ||
Protein |
prc |
Interaction isolated from total cell lysates | ||
Protein |
glmM |
Interaction isolated from total cell lysates | ||
Protein |
flu |
Interaction isolated from freeze-thaw treatment in detergent | ||
Protein |
yjiA |
Interaction isolated from freeze-thaw treatment in Tris-EDTA | ||
Protein |
yqaB |
Interaction isolated from freeze-thaw treatment in Tris-EDTA | ||
Protein |
mqo |
Interaction isolated from freeze-thaw treatment in Tris-EDTA & total cell lysates | ||
Protein |
yebE |
Interaction isolated from total cell lysates | ||
Protein |
obgE |
Interaction isolated from total cell lysates | ||
Protein |
dnaN |
MALDI(Z-score):25.219947 | ||
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Compartment | Description | Evidence | Reference/Source | Notes |
---|---|---|---|---|
plasma membrane |
From EcoCyc[3] |
| ||
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Name | |
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Sequence |
MRITIILVAP ARAENIGAAA RAMKTMGFSD LRIVDSQAHL EPATRWVAHG SGDIIDNIKV FPTLAESLHD VDFTVATTAR SRAKYHYYAT PVELVPLLEE KSSWMSHAAL VFGREDSGLT NEELALADVL TGVPMVADYP SLNLGQAVMV YCYQLATLIQ QPAKSDATAD QHQLQALRER AMTLLTTLAV ADDIKLVDWL QQRLGLLEQR DTAMLHRLLH DIEKNITK |
Length |
228 |
Mol. Wt |
25.259 kDa |
pI |
5.9 (calculated) |
Extinction coefficient |
25,440 - 25,565 (calc based on 6 Y, 3 W, and 1 C residues) |
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Domains/Motifs/Modification Sites
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Resource type | Source | Notes/Reference |
---|---|---|
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
Name | URL | Comments |
---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 5.21 5.22 5.23 5.24 5.25 5.26 5.27 Kumar, JK et al. (2004) Proteomic analysis of thioredoxin-targeted proteins in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 101 3759-64 PubMed
- ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
- ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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