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On One Page

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Gene |

Product(s) |

Expression|

Evolution |

References |

Quickview

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Standard Name	treA
Gene Synonym(s)	ECK1185, b1197, JW1186, tre, osmA^[1], osmA
Product Desc.	Trehalase, periplasmic^[2]
Product Synonyms(s)	periplasmic trehalase^[1], B1197^[3]^[1], Tre^[3]^[1], OsmA^[3]^[1], TreA^[3]^[1] , ECK1185, JW1186, osmA, b1197
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): treA^[3]
Regulation/Activity
Quick Links
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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name	treA
Mnemonic	Trehalose
Synonyms	ECK1185, b1197, JW1186, tre, osmA^[1], osmA
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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
MG1655	26.83 minutes	MG1655: 1246599..1244902 <gbrowseImage> name=NC_000913:1244902..1246599 source=MG1655 preset=GeneLocation </gbrowseImage>	EcoCyc GBrowse(MG1655)	FASTA Dump EcoCyc Sequence Dump
REL606		NC_012967: 1247526..1245829 <gbrowseImage> name=NC_012967:1245829..1247526 source=REL606 preset=GeneLocation </gbrowseImage>	GBrowse (REL606)	FASTA Dump
BW2952		NC_012759: 1133623..1135320 <gbrowseImage> name=NC_012759:1133623..1135320 source=BW2952 preset=GeneLocation </gbrowseImage>	GBrowse (BW2952)	FASTA Dump
W3110		W3110: 1248953..1247256 <gbrowseImage> name=NC_007779:1247256..1248953 source=W3110 preset=GeneLocation </gbrowseImage>	GBrowse(W3110)	FASTA Dump
DH10B		DH10B: 1286840..1285143 <gbrowseImage> name=NC_010473:1285143..1286840 source=DH10B preset=GeneLocation </gbrowseImage>	GBrowse(DH10B)	FASTA Dump
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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type	Strain	Genomic Location	Evidence	Reference	Notes
Coding Start (SO:0000323)	MG1655	1244905	Edman degradation	PMID:2671658
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele	Nt change(s)	AA change(s)	Phenotype: Type	Phenotype: Description	Reference	Availability
ΔtreA (Keio:JW1186)	deletion	deletion			PMID:16738554	Shigen CGSC9090^[4]
ΔtreA::kan	deletion		Biolog:respiration	unable to respire D-Trehalose	PMID:16095938
treA1						CGSC:5090
ΔtreA777::kan					PMID:16738554	CGSC:103198
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Notes

Genetic Interactions

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Interactor	Interaction	Allele	Score(s)	Reference(s)	Accessions	Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
JW1186	Plasmid clone	Shigen	PMID:16769691 Status:Clone OK Primer 1:GCCAAATCCCCCGCACCTTCTCG Primer 2:CCAGGTGTGGGTTGTGCCTCTTT
7C10	Kohara Phage	Genobase	PMID:3038334
fadR13::Tn10	Linked marker	CAG18497 = CGSC7365^[4]	est. P1 cotransduction: 69% ^[5]
oppC506::Tn10	Linked marker	CAG12169 = CGSC7369^[4]	est. P1 cotransduction: 5% ^[5] Synonyms:zch-506::Tn10, zci-506::Tn10
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG11017	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11017	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001006	Escherichia coli str. K-12 substr. MG1655
NCBI (EcoliWiki Page)	GeneID:945757	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1010	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0004021	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name	TreA
Synonyms	periplasmic trehalase^[1], B1197^[3]^[1], Tre^[3]^[1], OsmA^[3]^[1], TreA^[3]^[1] , ECK1185, JW1186, osmA, b1197
Product description	Trehalase, periplasmic^[2]
EC number (for enzymes)	3.2.1.28^[1]
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0030288	outer membrane-bounded periplasmic space				C	Seeded from Riley et al 2006 ^[1].	Missing: evidence, reference
	GO:0003824	catalytic activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR008928	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004555	alpha,alpha-trehalase activity	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01060	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004555	alpha,alpha-trehalase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001661	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004555	alpha,alpha-trehalase activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR018232	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004555	alpha,alpha-trehalase activity	GOA:spec GO_REF:0000003	IEA: Inferred from Electronic Annotation	EC:3.2.1.28	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005991	trehalose metabolic process	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01060	P	Seeded from EcoCyc (v14.0)	complete
	GO:0005991	trehalose metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001661	P	Seeded from EcoCyc (v14.0)	complete
	GO:0005991	trehalose metabolic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR018232	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008152	metabolic process	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0326	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016787	hydrolase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0378	F	Seeded from EcoCyc (v14.0)	complete
	GO:0016798	hydrolase activity, acting on glycosyl bonds	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0326	F	Seeded from EcoCyc (v14.0)	complete
	GO:0042597	periplasmic space	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01060	C	Seeded from EcoCyc (v14.0)	complete
	GO:0042597	periplasmic space	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0574	C	Seeded from EcoCyc (v14.0)	complete
	GO:0042597	periplasmic space	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-0200	C	Seeded from EcoCyc (v14.0)	complete
	GO:0006974	response to DNA damage stimulus	PMID:11967071	IEP: Inferred from Expression Pattern		P		complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	fdnH	PMID:16606699	Experiment(s):EBI-1139155
Protein	yhbJ	PMID:16606699	Experiment(s):EBI-1139155
Protein	putA	PMID:16606699	Experiment(s):EBI-1139155
Protein	narZ	PMID:16606699	Experiment(s):EBI-1139155
Protein	ada	PMID:16606699	Experiment(s):EBI-1139155
Protein	rplI	PMID:19402753	LCMS(ID Probability):99.6
Protein	yfiD	PMID:19402753	LCMS(ID Probability):99.6
Protein	eno	PMID:19402753	LCMS(ID Probability):99.6
Protein	gapA	PMID:19402753	LCMS(ID Probability):99.6
Protein	dps	PMID:19402753	LCMS(ID Probability):99.6
Protein	secB	PMID:19402753	LCMS(ID Probability):99.6
Protein	hdeA	PMID:19402753	LCMS(ID Probability):99.6
Protein	fbaA	PMID:19402753	LCMS(ID Probability):99.6
Protein	ldhA	PMID:19402753	LCMS(ID Probability):99.2
Protein	cysK	PMID:19402753	LCMS(ID Probability):99.6
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Evidence	Reference/Source
periplasm		From EcoCyc^[6]
Periplasm	PMID:2671658	EchoLocation:treA
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MKSPAPSRPQ KMALIPACIF LCFAALSVQA EETPVTPQPP DILLGPLFND VQNAKLFPDQ KTFADAVPNS DPLMILADYR MQQNQSGFDL RHFVNVNFTL PKEGEKYVPP EGQSLREHID GLWPVLTRST ENTEKWDSLL PLPEPYVVPG GRFREVYYWD SYFTMLGLAE SGHWDKVADM VANFAHEIDT YGHIPNGNRS YYLSRSQPPF FALMVELLAQ HEGDAALKQY LPQMQKEYAY WMDGVENLQA GQQEKRVVKL QDGTLLNRYW DDRDTPRPES WVEDIATAKS NPNRPATEIY RDLRSAAASG WDFSSRWMDN PQQLNTLRTT SIVPVDLNSL MFKMEKILAR ASKAAGDNAM ANQYETLANA RQKGIEKYLW NDQQGWYADY DLKSHKVRNQ LTAAALFPLY VNAAAKDRAN KMATATKTHL LQPGGLNTTS VKSGQQWDAP NGWAPLQWVA TEGLQNYGQK EVAMDISWHF LTNVQHTYDR EKKLVEKYDV STTGTGGGGG EYPLQDGFGW TNGVTLKMLD LICPKEQPCD NVPATRPTVK SATTQPSTKE AQPTP
Length	565
Mol. Wt	63.637 kDa
pI	5.7 (calculated)
Extinction coefficient	122,270 - 122,770 (calc based on 23 Y, 16 W, and 4 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
motif	1-30	UniProt Manual:Signal Peptides	UniProt:P13482
Domain	55..533	PF01204 Trehalase		PMID:19920124
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=treA taxon=562,83333 </beststructure>

Models

View models at:

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</protect>

Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16129160	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:945757	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0004021	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P13482	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG11017	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11017	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:945757	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001006	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1010	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Cellular Levels

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See Help:Cellular levels

Molecule	Organism or Strain	Value	Units	Experimental Conditions	Assay used	Notes	Reference(s)
Protein	Ecoli K-12	2.07+/-0.045	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		Single Molecule Fluorescence	PMID:20671182
mRNA	Ecoli K-12	0.017088981	Molecules/cell	Medium: Temperature (°C): Doubling time (min): Growth Rate(min): * Growth phase: other: *		by RNA_Seq	PMID:20671182
Protein	E. coli K-12 MG1655	24	molecules/cell/generation	Medium: MOPS Complete Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	243	molecules/cell/generation	Medium: MOPS Minimal Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling		PMID: 24766808
Protein	E. coli K-12 MG1655	11^a	molecules/cell/generation	Medium: MOPS Complete without Methionine Temperature (°C): 37 Doubling time (min): *Growth phase: OD: other:	Ribosome Profiling	Low confidence in the sequencing data set.	PMID: 24766808
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
treA
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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:1246579..1246619 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name	Mutation	Phenotype	Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type	Reference	Notes
microarray	GEO Profiles:b1197 (EcoliWiki Page)	NCBI GEO profiles for treA
microarray	GenExpDB:b1197 (EcoliWiki Page)	Summary of data for treA from multiple microarray studies
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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name	Resource Type	Description	Source	Notes
	GFP Fusion	Intergenic region (1246522..1246951) fused to gfpmut2.	OpenBioSystems	GFP fusion described in Zaslaver, et al. Plate:109-AZ11; Well:B12^[7]
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Notes

Accessions Related to treA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:EG11017	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1010	Escherichia coli str. K-12 substr. MG1655
EcoliGenExpDB (EcoliWiki Page)	EcoliGenExpDB:b1197
EcoGene	EcoGene:EG11017	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001006	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0004021	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Anopheles gambiae	ENSANGP00000015519 (score: 1.000; bootstrap: 100%) ENSANGP00000008628 (score: 0.989)	From Inparanoid:20070104
Apis mellifera	ENSAPMP00000030892 (score: 1.000; bootstrap: 100%) ENSAPMP00000004012 (score: 0.293)	From Inparanoid:20070104
Arabidopsis thaliana	AT4G24040 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Bos taurus	ENSBTAP00000021565 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Caenorhabditis briggsae	WBGene00028108 (score: 1.000; bootstrap: 100%) WBGene00033575 (score: 1.000; bootstrap: 100%) WBGene00041665 (score: 0.204) WBGene00029175 (score: 0.194) WBGene00029498 (score: 0.052)	From Inparanoid:20070104
Caenorhabditis elegans	WBGene00006608 (score: 1.000; bootstrap: 100%) WBGene00006607 (score: 1.000; bootstrap: 100%) WBGene00006611 (score: 0.203) WBGene00006609 (score: 0.197) WBGene00006610 (score: 0.076)	From Inparanoid:20070104
Canis familiaris	ENSCAFP00000018370 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Ciona intestinalis	ENSCINP00000004347 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Dictyostelium discoideum	DDB0185541 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Drosophila melanogaster	FBgn0003748 (score: 1.000; bootstrap: 100%) FBgn0034121 (score: 0.296)	From Inparanoid:20070104
Homo sapiens	ENSP00000264029 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Macaca mulatta	ENSMMUP00000003433 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Monodelphis domestica	ENSMODP00000016736 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Mus musculus	MGI:1926230 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Pan troglodytes	ENSPTRP00000007463 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Rattus norvegicus	ENSRNOP00000018054 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Saccharomyces cerevisiae	YDR001C (score: 1.000; bootstrap: 100%) YBR001C (score: 0.754)	From Inparanoid:20070104
Schizosaccharomyces pombe	SPBC6607 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Takifugu rubripes	NEWSINFRUP00000156728 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Tetraodon nigroviridis	GSTENP00030223001 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Xenopus tropicalis	ENSXETP00000046574 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Shigella flexneri	TREA	From SHIGELLACYC
E. coli O157	TREA	From ECOO157CYC
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Do-It-Yourself Web Tools

Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Superfamily (EcoliWiki Page)	SUPERFAMILY:48208
Panther (EcoliWiki Page)	PTHR23403:SF1
Pfam (EcoliWiki Page)	PF01204 Trehalase
EcoCyc	EcoCyc:EG11017	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11017	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001006	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1010	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0004021	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.00 ^1.01 ^1.02 ^1.03 ^1.04 ^1.05 ^1.06 ^1.07 ^1.08 ^1.09 ^1.10 ^1.11 ^1.12 ^1.13 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^3.0 ^3.1 ^3.2 ^3.3 ^3.4 ^3.5 ^3.6 ^3.7 ^3.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 ^4.2 CGSC: The Coli Genetics Stock Center
↑ ^5.0 ^5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

treA:On One Page

Quickview

Notes

Gene

Nomenclature

Notes

Location(s) and DNA Sequence

Notes

Sequence Features

Notes

Alleles and Phenotypes

Notes

Genetic Interactions

Notes

Genetic Resources

Notes

Accessions in Other Databases

Notes

Links

Product(s)

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

Expression

Overview

Cellular Levels

Notes

Transcription and Transcriptional Regulation

Notes

Translation and Regulation of Translation

Notes

Turnover and Regulation of Turnover

Notes

Experimental

Notes

Accessions Related to treA Expression

Notes

Links

Evolution

Homologs in Other Organisms

Do-It-Yourself Web Tools

Notes

Families

Notes

Links

References

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