treA:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Standard Name

treA

Gene Synonym(s)

ECK1185, b1197, JW1186, tre, osmA[1], osmA

Product Desc.

Trehalase, periplasmic[2]

Product Synonyms(s)

periplasmic trehalase[1], B1197[3][1], Tre[3][1], OsmA[3][1], TreA[3][1] , ECK1185, JW1186, osmA, b1197

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): treA[3]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

treA

Mnemonic

Trehalose

Synonyms

ECK1185, b1197, JW1186, tre, osmA[1], osmA

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

26.83 minutes 

MG1655: 1246599..1244902
<gbrowseImage> name=NC_000913:1244902..1246599 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1247526..1245829
<gbrowseImage> name=NC_012967:1245829..1247526 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1133623..1135320
<gbrowseImage> name=NC_012759:1133623..1135320 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1248953..1247256
<gbrowseImage> name=NC_007779:1247256..1248953 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1286840..1285143
<gbrowseImage> name=NC_010473:1285143..1286840 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

1244905

Edman degradation

PMID:2671658


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔtreA (Keio:JW1186)

deletion

deletion

PMID:16738554

Shigen
CGSC9090[4]

ΔtreA::kan

deletion

Biolog:respiration

unable to respire D-Trehalose

PMID:16095938

treA1

CGSC:5090

ΔtreA777::kan

PMID:16738554

CGSC:103198


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes

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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW1186

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAAATCCCCCGCACCTTCTCG

Primer 2:CCAGGTGTGGGTTGTGCCTCTTT

7C10

Kohara Phage

Genobase

PMID:3038334

fadR13::Tn10

Linked marker

CAG18497 = CGSC7365[4]

est. P1 cotransduction: 69% [5]

oppC506::Tn10

Linked marker

CAG12169 = CGSC7369[4]

est. P1 cotransduction: 5% [5]
Synonyms:zch-506::Tn10, zci-506::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11017

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11017

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001006

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945757

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1010

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004021

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

TreA

Synonyms

periplasmic trehalase[1], B1197[3][1], Tre[3][1], OsmA[3][1], TreA[3][1] , ECK1185, JW1186, osmA, b1197

Product description

Trehalase, periplasmic[2]

EC number (for enzymes)

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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0030288

outer membrane-bounded periplasmic space

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR008928

F

Seeded from EcoCyc (v14.0)

complete

GO:0004555

alpha,alpha-trehalase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01060

F

Seeded from EcoCyc (v14.0)

complete

GO:0004555

alpha,alpha-trehalase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001661

F

Seeded from EcoCyc (v14.0)

complete

GO:0004555

alpha,alpha-trehalase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018232

F

Seeded from EcoCyc (v14.0)

complete

GO:0004555

alpha,alpha-trehalase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:3.2.1.28

F

Seeded from EcoCyc (v14.0)

complete

GO:0005991

trehalose metabolic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01060

P

Seeded from EcoCyc (v14.0)

complete

GO:0005991

trehalose metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001661

P

Seeded from EcoCyc (v14.0)

complete

GO:0005991

trehalose metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018232

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0326

P

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc (v14.0)

complete

GO:0016798

hydrolase activity, acting on glycosyl bonds

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0326

F

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01060

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0574

C

Seeded from EcoCyc (v14.0)

complete

GO:0042597

periplasmic space

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0200

C

Seeded from EcoCyc (v14.0)

complete

GO:0006974

response to DNA damage stimulus

PMID:11967071

IEP: Inferred from Expression Pattern

P

complete

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

fdnH

PMID:16606699

Experiment(s):EBI-1139155

Protein

yhbJ

PMID:16606699

Experiment(s):EBI-1139155

Protein

putA

PMID:16606699

Experiment(s):EBI-1139155

Protein

narZ

PMID:16606699

Experiment(s):EBI-1139155

Protein

ada

PMID:16606699

Experiment(s):EBI-1139155

Protein

rplI

PMID:19402753

LCMS(ID Probability):99.6

Protein

yfiD

PMID:19402753

LCMS(ID Probability):99.6

Protein

eno

PMID:19402753

LCMS(ID Probability):99.6

Protein

gapA

PMID:19402753

LCMS(ID Probability):99.6

Protein

dps

PMID:19402753

LCMS(ID Probability):99.6

Protein

secB

PMID:19402753

LCMS(ID Probability):99.6

Protein

hdeA

PMID:19402753

LCMS(ID Probability):99.6

Protein

fbaA

PMID:19402753

LCMS(ID Probability):99.6

Protein

ldhA

PMID:19402753

LCMS(ID Probability):99.2

Protein

cysK

PMID:19402753

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

periplasm

From EcoCyc[6]

Periplasm

PMID:2671658

EchoLocation:treA


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MKSPAPSRPQ KMALIPACIF LCFAALSVQA EETPVTPQPP DILLGPLFND VQNAKLFPDQ
KTFADAVPNS DPLMILADYR MQQNQSGFDL RHFVNVNFTL PKEGEKYVPP EGQSLREHID
GLWPVLTRST ENTEKWDSLL PLPEPYVVPG GRFREVYYWD SYFTMLGLAE SGHWDKVADM
VANFAHEIDT YGHIPNGNRS YYLSRSQPPF FALMVELLAQ HEGDAALKQY LPQMQKEYAY
WMDGVENLQA GQQEKRVVKL QDGTLLNRYW DDRDTPRPES WVEDIATAKS NPNRPATEIY
RDLRSAAASG WDFSSRWMDN PQQLNTLRTT SIVPVDLNSL MFKMEKILAR ASKAAGDNAM
ANQYETLANA RQKGIEKYLW NDQQGWYADY DLKSHKVRNQ LTAAALFPLY VNAAAKDRAN
KMATATKTHL LQPGGLNTTS VKSGQQWDAP NGWAPLQWVA TEGLQNYGQK EVAMDISWHF
LTNVQHTYDR EKKLVEKYDV STTGTGGGGG EYPLQDGFGW TNGVTLKMLD LICPKEQPCD
NVPATRPTVK SATTQPSTKE AQPTP
Length

565

Mol. Wt

63.637 kDa

pI

5.7 (calculated)

Extinction coefficient

122,270 - 122,770 (calc based on 23 Y, 16 W, and 4 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-30

UniProt Manual:Signal Peptides

UniProt:P13482

Domain

55..533

PF01204 Trehalase

PMID:19920124

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=treA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129160

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945757

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004021

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P13482

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11017

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11017

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945757

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001006

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1010

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

Ecoli K-12

2.07+/-0.045

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.017088981

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 MG1655

24

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

243

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

11a

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

Low confidence in the sequencing data set.

PMID: 24766808

Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

treA

Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:1246579..1246619 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

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Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference


Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b1197 (EcoliWiki Page)

NCBI GEO profiles for treA

microarray

GenExpDB:b1197 (EcoliWiki Page)

Summary of data for treA from multiple microarray studies


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (1246522..1246951) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ11; Well:B12[7]

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Notes

Accessions Related to treA Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11017

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1010

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1197

EcoGene

EcoGene:EG11017

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001006

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004021

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000015519 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000008628 (score: 0.989)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000030892 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000004012 (score: 0.293)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G24040 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000021565 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00028108 (score: 1.000; bootstrap: 100%)
  • WBGene00033575 (score: 1.000; bootstrap: 100%)
  • WBGene00041665 (score: 0.204)
  • WBGene00029175 (score: 0.194)
  • WBGene00029498 (score: 0.052)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00006608 (score: 1.000; bootstrap: 100%)
  • WBGene00006607 (score: 1.000; bootstrap: 100%)
  • WBGene00006611 (score: 0.203)
  • WBGene00006609 (score: 0.197)
  • WBGene00006610 (score: 0.076)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000018370 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000004347 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0185541 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0003748 (score: 1.000; bootstrap: 100%)
  • FBgn0034121 (score: 0.296)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000264029 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000003433 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000016736 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1926230 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000007463 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000018054 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR001C (score: 1.000; bootstrap: 100%)
  • YBR001C (score: 0.754)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC6607 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000156728 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00030223001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000046574 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

TREA

From SHIGELLACYC

E. coli O157

TREA

From ECOO157CYC


Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:48208

Panther (EcoliWiki Page)

PTHR23403:SF1

Pfam (EcoliWiki Page)

PF01204 Trehalase

EcoCyc

EcoCyc:EG11017

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11017

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001006

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1010

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004021

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.0 2.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  3. 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. 4.0 4.1 4.2 CGSC: The Coli Genetics Stock Center
  5. 5.0 5.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  6. EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  7. Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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