tgt:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Standard Name

tgt

Gene Synonym(s)

ECK0400, b0406, JW0396, vacC(S.f.)[1][2], vacC

Product Desc.

tRNA-guanine transglycosylase[2][3];

Component of tRNA-guanine transglycosylase[3]

tRNA-guanine transglycosylase; queuosine biosynthesis; zinc metalloprotein[4]

Product Synonyms(s)

tRNA-guanine transglycosylase[1], B0406[2][1], Tgt[2][1] , ECK0400, JW0396, vacC, b0406

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): tgt-yajC[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Tgt forms a transient covalent linkage with the tRNA substrate. Tgt can recognize a DNA substrate when 2'-deoxyuridines replace thymidines.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

tgt

Mnemonic

tRNA-guanine transglycosylase

Synonyms

ECK0400, b0406, JW0396, vacC(S.f.)[1][2], vacC

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

9.17 minutes 

MG1655: 425361..426488
<gbrowseImage> name=NC_000913:425361..426488 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 394560..395687
<gbrowseImage> name=NC_012967:394560..395687 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 328120..329247
<gbrowseImage> name=NC_012759:328120..329247 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 425361..426488
<gbrowseImage> name=NC_007779:425361..426488 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 364692..365819
<gbrowseImage> name=NC_010473:364692..365819 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

425361

Edman degradation

PMID:8323579


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

Δtgt (Keio:JW0396)

deletion

deletion

PMID:16738554

Shigen
CGSC8571[5]

tgtS90F

S90F

Loss of activity

seeded from UniProt:P0A847

tgtC145A

C145A

No loss of activity

seeded from UniProt:P0A847

tgtC232A

C232A

Slight loss of activity

seeded from UniProt:P0A847

tgtC265A

C265A

Significant loss of activity

seeded from UniProt:P0A847

tgtC28A

C28A

Slight loss of activity

seeded from UniProt:P0A847

tgtS90A

S90A

Loss of activity

seeded from UniProt:P0A847

tgtS90C

S90C

Loss of activity

seeded from UniProt:P0A847

tgtC304A

C304A

Loss of activity

seeded from UniProt:P0A847

tgtC302A

C302A

Loss of activity

seeded from UniProt:P0A847

tgtH316A

H316A

Slight loss of activity

seeded from UniProt:P0A847

tgtC307A

C307A

Loss of activity

seeded from UniProt:P0A847

tgtH317A

H317A

Loss of activity

seeded from UniProt:P0A847

tgtC321A

C321A

No loss of activity

seeded from UniProt:P0A847

tgt-1

CGSC:68427

Δtgt-770::kan

PMID:16738554

CGSC:103136


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0396

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAAATTTGAACTGGACACCAC

Primer 2:CCATCAACGTTCAAAGGTGGTAC

9G9

Kohara Phage

Genobase

PMID:3038334

4F3

Kohara Phage

Genobase

PMID:3038334

zai-3053::Tn10

Linked marker

CAG18091 = CGSC7336[5]

est. P1 cotransduction: 30% [6]
Synonyms:zaj-3053::Tn10 nnnCAG18091 also carries proC9999 (CGSC).

tsx-247::Tn10

Linked marker

CAG12148 = CGSC7337[5]

est. P1 cotransduction: 81% [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10996

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10996

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000985

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:949130

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0989

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001413

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Tgt

Synonyms

tRNA-guanine transglycosylase[1], B0406[2][1], Tgt[2][1] , ECK0400, JW0396, vacC, b0406

Product description

tRNA-guanine transglycosylase[2][3];

Component of tRNA-guanine transglycosylase[3]

tRNA-guanine transglycosylase; queuosine biosynthesis; zinc metalloprotein[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0008033

tRNA processing

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00168

P

Seeded from EcoCyc (v14.0)

complete

GO:0008033

tRNA processing

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004803

P

Seeded from EcoCyc (v14.0)

complete

GO:0008033

tRNA processing

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0819

P

Seeded from EcoCyc (v14.0)

complete

GO:0008270

zinc ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0862

F

Seeded from EcoCyc (v14.0)

complete

GO:0008479

queuine tRNA-ribosyltransferase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00168

F

Seeded from EcoCyc (v14.0)

complete

GO:0008479

queuine tRNA-ribosyltransferase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002616

F

Seeded from EcoCyc (v14.0)

complete

GO:0008479

queuine tRNA-ribosyltransferase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004803

F

Seeded from EcoCyc (v14.0)

complete

GO:0008479

queuine tRNA-ribosyltransferase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.4.2.29

F

Seeded from EcoCyc (v14.0)

complete

GO:0008616

queuosine biosynthetic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00168

P

Seeded from EcoCyc (v14.0)

complete

GO:0008616

queuosine biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002616

P

Seeded from EcoCyc (v14.0)

complete

GO:0008616

queuosine biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004803

P

Seeded from EcoCyc (v14.0)

complete

GO:0008616

queuosine biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0671

P

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

GO:0016757

transferase activity, transferring glycosyl groups

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0328

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of tRNA-guanine transglycosylase

could be indirect

Protein

aceE

PMID:15690043

Experiment(s):EBI-886205

Protein

aceF

PMID:15690043

Experiment(s):EBI-886205

Protein

deaD

PMID:15690043

Experiment(s):EBI-886205

Protein

rplA

PMID:15690043

Experiment(s):EBI-886205

Protein

rplB

PMID:15690043

Experiment(s):EBI-886205, EBI-892692

Protein

rplI

PMID:15690043

Experiment(s):EBI-886205, EBI-892692

Protein

rpoB

PMID:15690043

Experiment(s):EBI-886205

Protein

rpsA

PMID:15690043

Experiment(s):EBI-886205

Protein

ycbY

PMID:15690043

Experiment(s):EBI-886205

Protein

rluB

PMID:15690043

Experiment(s):EBI-886205

Protein

yfiF

PMID:15690043

Experiment(s):EBI-886205, EBI-892692

Protein

rplU

PMID:15690043

Experiment(s):EBI-892692

Protein

rplV

PMID:15690043

Experiment(s):EBI-892692

Protein

rplX

PMID:15690043

Experiment(s):EBI-892692

Protein

rpmB

PMID:15690043

Experiment(s):EBI-892692

Protein

rpsE

PMID:15690043

Experiment(s):EBI-892692

Protein

rpsG

PMID:15690043

Experiment(s):EBI-892692

Protein

rpsL

PMID:15690043

Experiment(s):EBI-892692

Protein

rpsN

PMID:15690043

Experiment(s):EBI-892692

Protein

smpB

PMID:15690043

Experiment(s):EBI-892692

Protein

bcsA

PMID:15690043

Experiment(s):EBI-892692

Protein

hupA

PMID:15690043

Experiment(s):EBI-892692

Protein

hupB

PMID:15690043

Experiment(s):EBI-892692

Protein

rplC

PMID:15690043

Experiment(s):EBI-892692

Protein

rplD

PMID:15690043

Experiment(s):EBI-892692

Protein

rplL

PMID:15690043

Experiment(s):EBI-892692

Protein

rplM

PMID:15690043

Experiment(s):EBI-892692

Protein

rplQ

PMID:15690043

Experiment(s):EBI-892692

Protein

rplS

PMID:15690043

Experiment(s):EBI-892692

Protein

rplT

PMID:15690043

Experiment(s):EBI-892692

Protein

aceB

PMID:16606699

Experiment(s):EBI-1136481

Protein

nadE

PMID:16606699

Experiment(s):EBI-1136481

Protein

groL

PMID:16606699

Experiment(s):EBI-1136481

Protein

intE

PMID:16606699

Experiment(s):EBI-1136481

Protein

rpsL

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplQ

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplU

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplT

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplS

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpmB

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplI

PMID:19402753

LCMS(ID Probability):99.4 MALDI(Z-score):14.086251

Protein

rplX

PMID:19402753

LCMS(ID Probability):99.6

Protein

rlmL

PMID:19402753

MALDI(Z-score):17.760065

Protein

rplM

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplB

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):36.493482

Protein

rplA

PMID:19402753

MALDI(Z-score):25.201897

Protein

hupB

PMID:19402753

LCMS(ID Probability):99.6

Protein

bcsA

PMID:19402753

LCMS(ID Probability):99.2

Protein

smpB

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplD

PMID:19402753

LCMS(ID Probability):99.6

Protein

yfiF

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):35.724370

Protein

rluB

PMID:19402753

MALDI(Z-score):54.233046

Protein

deaD

PMID:19402753

MALDI(Z-score):25.664352

Protein

rplL

PMID:19402753

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKFELDTTDG RARRGRLVFD RGVVETPCFM PVGTYGTVKG MTPEEVEATG AQIILGNTFH
LWLRPGQEIM KLHGDLHDFM QWKGPILTDS GGFQVFSLGD IRKITEQGVH FRNPINGDPI
FLDPEKSMEI QYDLGSDIVM IFDECTPYPA DWDYAKRSME MSLRWAKRSR ERFDSLGNKN
ALFGIIQGSV YEDLRDISVK GLVDIGFDGY AVGGLAVGEP KADMHRILEH VCPQIPADKP
RYLMGVGKPE DLVEGVRRGI DMFDCVMPTR NARNGHLFVT DGVVKIRNAK YKSDTGPLDP
ECDCYTCRNY SRAYLHHLDR CNEILGARLN TIHNLRYYQR LMAGLRKAIE EGKLESFVTD
FYQRQGREVP PLNVD
Length

375

Mol. Wt

42.594 kDa

pI

6.4 (calculated)

Extinction coefficient

42,860 - 43,860 (calc based on 14 Y, 4 W, and 8 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

125..363

PF01702 Queuine tRNA-ribosyltransferase

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=tgt taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128391

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:949130

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001413

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A847

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10996

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10996

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:949130

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000985

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0989

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

6.90E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

E. coli K-12 MG1655

8185

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

1127

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

3753

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

tgt-yajC

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:425341..425381 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0406 (EcoliWiki Page)

NCBI GEO profiles for tgt

microarray

GenExpDB:b0406 (EcoliWiki Page)

Summary of data for tgt from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (425208..425406) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ10; Well:C4[7]

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Notes

Accessions Related to tgt Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10996

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0989

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0406

EcoGene

EcoGene:EG10996

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000985

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001413

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000011864 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000034847 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000023189 (score: 1.000; bootstrap: 93%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00028508 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00006566 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000026062 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000010821 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-1625 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2559 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0184073 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0031321 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18546-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000024354 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000250237 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000019254 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000007360 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1931441 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6K4A3 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000017866 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000010030 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC16879c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000150601 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00019772001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000004818 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

TGT

From SHIGELLACYC

E. coli O157

TGT

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:51713

Panther (EcoliWiki Page)

PTHR11962:SF0

Pfam (EcoliWiki Page)

PF01702 Queuine tRNA-ribosyltransferase

EcoCyc

EcoCyc:EG10996

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10996

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000985

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0989

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001413

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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