tgt:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Tgt

Synonyms

tRNA-guanine transglycosylase[1], B0406[2][1], Tgt[2][1] , ECK0400, JW0396, vacC, b0406

Product description

tRNA-guanine transglycosylase[2][3];

Component of tRNA-guanine transglycosylase[3]

tRNA-guanine transglycosylase; queuosine biosynthesis; zinc metalloprotein[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0008033

tRNA processing

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00168

P

Seeded from EcoCyc (v14.0)

complete

GO:0008033

tRNA processing

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004803

P

Seeded from EcoCyc (v14.0)

complete

GO:0008033

tRNA processing

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0819

P

Seeded from EcoCyc (v14.0)

complete

GO:0008270

zinc ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0862

F

Seeded from EcoCyc (v14.0)

complete

GO:0008479

queuine tRNA-ribosyltransferase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00168

F

Seeded from EcoCyc (v14.0)

complete

GO:0008479

queuine tRNA-ribosyltransferase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002616

F

Seeded from EcoCyc (v14.0)

complete

GO:0008479

queuine tRNA-ribosyltransferase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004803

F

Seeded from EcoCyc (v14.0)

complete

GO:0008479

queuine tRNA-ribosyltransferase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.4.2.29

F

Seeded from EcoCyc (v14.0)

complete

GO:0008616

queuosine biosynthetic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00168

P

Seeded from EcoCyc (v14.0)

complete

GO:0008616

queuosine biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002616

P

Seeded from EcoCyc (v14.0)

complete

GO:0008616

queuosine biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004803

P

Seeded from EcoCyc (v14.0)

complete

GO:0008616

queuosine biosynthetic process

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0671

P

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

GO:0016757

transferase activity, transferring glycosyl groups

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0328

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of tRNA-guanine transglycosylase

could be indirect

Protein

aceE

PMID:15690043[5]

Experiment(s):EBI-886205

Protein

aceF

PMID:15690043[5]

Experiment(s):EBI-886205

Protein

deaD

PMID:15690043[5]

Experiment(s):EBI-886205

Protein

rplA

PMID:15690043[5]

Experiment(s):EBI-886205

Protein

rplB

PMID:15690043[5]

Experiment(s):EBI-886205, EBI-892692

Protein

rplI

PMID:15690043[5]

Experiment(s):EBI-886205, EBI-892692

Protein

rpoB

PMID:15690043[5]

Experiment(s):EBI-886205

Protein

rpsA

PMID:15690043[5]

Experiment(s):EBI-886205

Protein

ycbY

PMID:15690043[5]

Experiment(s):EBI-886205

Protein

rluB

PMID:15690043[5]

Experiment(s):EBI-886205

Protein

yfiF

PMID:15690043[5]

Experiment(s):EBI-886205, EBI-892692

Protein

rplU

PMID:15690043[5]

Experiment(s):EBI-892692

Protein

rplV

PMID:15690043[5]

Experiment(s):EBI-892692

Protein

rplX

PMID:15690043[5]

Experiment(s):EBI-892692

Protein

rpmB

PMID:15690043[5]

Experiment(s):EBI-892692

Protein

rpsE

PMID:15690043[5]

Experiment(s):EBI-892692

Protein

rpsG

PMID:15690043[5]

Experiment(s):EBI-892692

Protein

rpsL

PMID:15690043[5]

Experiment(s):EBI-892692

Protein

rpsN

PMID:15690043[5]

Experiment(s):EBI-892692

Protein

smpB

PMID:15690043[5]

Experiment(s):EBI-892692

Protein

bcsA

PMID:15690043[5]

Experiment(s):EBI-892692

Protein

hupA

PMID:15690043[5]

Experiment(s):EBI-892692

Protein

hupB

PMID:15690043[5]

Experiment(s):EBI-892692

Protein

rplC

PMID:15690043[5]

Experiment(s):EBI-892692

Protein

rplD

PMID:15690043[5]

Experiment(s):EBI-892692

Protein

rplL

PMID:15690043[5]

Experiment(s):EBI-892692

Protein

rplM

PMID:15690043[5]

Experiment(s):EBI-892692

Protein

rplQ

PMID:15690043[5]

Experiment(s):EBI-892692

Protein

rplS

PMID:15690043[5]

Experiment(s):EBI-892692

Protein

rplT

PMID:15690043[5]

Experiment(s):EBI-892692

Protein

aceB

PMID:16606699[6]

Experiment(s):EBI-1136481

Protein

nadE

PMID:16606699[6]

Experiment(s):EBI-1136481

Protein

groL

PMID:16606699[6]

Experiment(s):EBI-1136481

Protein

intE

PMID:16606699[6]

Experiment(s):EBI-1136481

Protein

rpsL

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplQ

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplU

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplT

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplS

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpmB

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplI

PMID:19402753[7]

LCMS(ID Probability):99.4 MALDI(Z-score):14.086251

Protein

rplX

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rlmL

PMID:19402753[7]

MALDI(Z-score):17.760065

Protein

rplM

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplB

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):36.493482

Protein

rplA

PMID:19402753[7]

MALDI(Z-score):25.201897

Protein

hupB

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

bcsA

PMID:19402753[7]

LCMS(ID Probability):99.2

Protein

smpB

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplD

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

yfiF

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):35.724370

Protein

rluB

PMID:19402753[7]

MALDI(Z-score):54.233046

Protein

deaD

PMID:19402753[7]

MALDI(Z-score):25.664352

Protein

rplL

PMID:19402753[7]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKFELDTTDG RARRGRLVFD RGVVETPCFM PVGTYGTVKG MTPEEVEATG AQIILGNTFH
LWLRPGQEIM KLHGDLHDFM QWKGPILTDS GGFQVFSLGD IRKITEQGVH FRNPINGDPI
FLDPEKSMEI QYDLGSDIVM IFDECTPYPA DWDYAKRSME MSLRWAKRSR ERFDSLGNKN
ALFGIIQGSV YEDLRDISVK GLVDIGFDGY AVGGLAVGEP KADMHRILEH VCPQIPADKP
RYLMGVGKPE DLVEGVRRGI DMFDCVMPTR NARNGHLFVT DGVVKIRNAK YKSDTGPLDP
ECDCYTCRNY SRAYLHHLDR CNEILGARLN TIHNLRYYQR LMAGLRKAIE EGKLESFVTD
FYQRQGREVP PLNVD
Length

375

Mol. Wt

42.594 kDa

pI

6.4 (calculated)

Extinction coefficient

42,860 - 43,860 (calc based on 14 Y, 4 W, and 8 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

125..363

PF01702 Queuine tRNA-ribosyltransferase

PMID:19920124[8]

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=tgt taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128391

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:949130

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001413

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A847

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10996

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10996

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:949130

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000985

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0989

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 5.21 5.22 5.23 5.24 5.25 5.26 5.27 5.28 5.29 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 7.15 7.16 7.17 7.18 7.19 7.20 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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