sdhB:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

sdhB

Gene Synonym(s)

ECK0713, b0724, JW0714, dhsB[1]

Product Desc.

succinate dehydrogenase iron-sulfur protein[2][3];

Component of catalytic subcomplex of succinate dehydrogenase[3]; succinate dehydrogenase[3]

Succinate dehydrogenase (SQR) iron-sulfur protein; succinate:ubiquinone oxidoreductase (SQR); complex II of aerobic respiration[4]

Product Synonyms(s)

succinate dehydrogenase, FeS subunit[1], B0724[2][1], DhsB[2][1], SdhB[2][1] , ECK0713, JW0714, b0724

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): sdhDAB[2], sdhCDAB-sucABCD[2], OP00142, sdhCDAB

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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The sdhABCD operon is negatively regulated by ryhB RNA as part of indirect positive regulation by Fur.[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

sdhB

Mnemonic

Succinate dehydrogenase

Synonyms

ECK0713, b0724, JW0714, dhsB[1]

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

16.31 minutes 

MG1655: 756912..757628
<gbrowseImage> name=NC_000913:756912..757628 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 738480..739196
<gbrowseImage> name=NC_012967:738480..739196 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 659672..660388
<gbrowseImage> name=NC_012759:659672..660388 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 758111..758827
<gbrowseImage> name=NC_007779:758111..758827 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 809504..810220
<gbrowseImage> name=NC_010473:809504..810220 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

756912

Edman degradation

PMID:9298646


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

sdhB(del) (Keio:JW0714)

deletion

deletion

PMID:16738554

Shigen
CGSC8303[5]

sdhB(del)::kan

deletion

Biolog:respiration

unable to respire Acetate

PMID:16095938

sdhB(del)::kan

deletion

Biolog:respiration

unable to respire a-Ketobutyrate

PMID:16095938

sdhB(del)::kan

deletion

Biolog:respiration

unable to respire Bromosuccinate

PMID:16095938

sdhB(del)::kan

deletion

Biolog:respiration

unable to respire L-Aspartate

PMID:16095938

sdhB(del)::kan

deletion

Biolog:respiration

unable to respire L-Serine

PMID:16095938

sdhB774(del)::kan

PMID:16738554

CGSC:99836

sdhB774(del)::FRTKanFRT

deletion

Mutagenesis Rate

Decrease in Stress Induced Mutagenesis (SIM).

PMID:23224554

Parent Strain: SMR4562 Experimental Strain: SMR12332

The mutation conferred a significant decrease in SIM with a 67 to 89 percent reduction in mutant frequency. See table S3 for full experimental results.

sdhB774(del)::FRTKanFRT

deletion

Sensitivity to

SDS-EDTA Sensitivity

PMID:23224554

Parent Strain: SMR4562 Experimental Strain: SMR12332

The mutation conferred increased sensitivity toward SDS-EDTA. See table S7 and S1 for summary of experimental data.

SMR4562 yiaG-yfp FRTcatFRT sdhB774(del)::FRTKanFRT

deletion

SigmaS activity

Decrease in SigmaS activity

PMID:23224554

Parental Strain: SMR10582 Experimental Strain: SMR14297

See table S8 for full experimental strain

CAG45114 sdhB774(del)::FRTKanFRT

Deletion

SigmaE activity

Decrease in sigmaE activity

PMID:23224554

Parental Strain: CAG45114 Experimental Strain: SMR15261

See table S11 for full experimental data.

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0714

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAGACTCGAGTTTTCAATTTA

Primer 2:CCCGCATTACGTTGCAACAACAT

7E10

Kohara Phage

Genobase

PMID:3038334

asnB3057::Tn10

Linked marker

CAG18433 = CGSC7349[5]

est. P1 cotransduction: 6% [6]
Synonyms:zbf-3057::Tn10 nnnThe Tn10 in CAG18433 is inserted in the asnB regulatory region, 4 bp before the start of the asnB ORF.

nadA57::Tn10

Linked marker

CAG12147 = CGSC7351[5]

est. P1 cotransduction: 43% [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10932

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10932

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000921

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945300

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0925

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002468

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

SdhB

Synonyms

succinate dehydrogenase, FeS subunit[1], B0724[2][1], DhsB[2][1], SdhB[2][1] , ECK0713, JW0714, b0724

Product description

succinate dehydrogenase iron-sulfur protein[2][3];

Component of catalytic subcomplex of succinate dehydrogenase[3]; succinate dehydrogenase[3]

Succinate dehydrogenase (SQR) iron-sulfur protein; succinate:ubiquinone oxidoreductase (SQR); complex II of aerobic respiration[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0000104

succinate dehydrogenase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:1.3.99.1

F

Seeded from EcoCyc (v14.0)

complete

GO:0005506

iron ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0408

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0006099

tricarboxylic acid cycle

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004489

P

Seeded from EcoCyc (v14.0)

complete

GO:0006099

tricarboxylic acid cycle

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0816

P

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc (v14.0)

complete

GO:0009055

electron carrier activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001041

F

Seeded from EcoCyc (v14.0)

complete

GO:0009055

electron carrier activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017900

F

Seeded from EcoCyc (v14.0)

complete

GO:0009055

electron carrier activity

PMID:16864590

IMP: Inferred from Mutant Phenotype

F

Seeded from EcoCyc (v14.0)

complete

GO:0009060

aerobic respiration

PMID:7783618

IEP: Inferred from Expression Pattern

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004489

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR009051

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012285

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

F

Seeded from EcoCyc (v14.0)

complete

GO:0019898

extrinsic to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9903

C

Seeded from EcoCyc (v14.0)

complete

GO:0022900

electron transport chain

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0249

P

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

GO:0051536

iron-sulfur cluster binding

PMID:2997176

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0051537

2 iron, 2 sulfur cluster binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0001

F

Seeded from EcoCyc (v14.0)

complete

GO:0051537

2 iron, 2 sulfur cluster binding

PMID:1312028

IMP: Inferred from Mutant Phenotype

F

Seeded from EcoCyc (v14.0)

complete

GO:0051538

3 iron, 4 sulfur cluster binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0003

F

Seeded from EcoCyc (v14.0)

complete

GO:0051538

3 iron, 4 sulfur cluster binding

PMID:2987254

IDA: Inferred from Direct Assay

F

Seeded from EcoCyc (v14.0)

complete

GO:0051539

4 iron, 4 sulfur cluster binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0004

F

Seeded from EcoCyc (v14.0)

complete

GO:0051539

4 iron, 4 sulfur cluster binding

PMID:3008846

IMP: Inferred from Mutant Phenotype

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004489

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR009051

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of catalytic subcomplex of succinate dehydrogenase

could be indirect

Protein

groL

PMID:16606699

Experiment(s):EBI-1137799

Protein

Subunits of succinate dehydrogenase

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

From EcoCyc[3]

Cytoplasm

PMID:6388571, PMID:9298646, PMID:2987185

EchoLocation:sdhB


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRLEFSIYRY NPDVDDAPRM QDYTLEADEG RDMMLLDALI QLKEKDPSLS FRRSCREGVC
GSDGLNMNGK NGLACITPIS ALNQPGKKIV IRPLPGLPVI RDLVVDMGQF YAQYEKIKPY
LLNNGQNPPA REHLQMPEQR EKLDGLYECI LCACCSTSCP SFWWNPDKFI GPAGLLAAYR
FLIDSRDTET DSRLDGLSDA FSVFRCHSIM NCVSVCPKGL NPTRAIGHIK SMLLQRNA
Length

238

Mol. Wt

26.77 kDa

pI

6.7 (calculated)

Extinction coefficient

22,920 - 24,295 (calc based on 8 Y, 2 W, and 11 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=sdhB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128699

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945300

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002468

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P07014

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10932

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10932

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945300

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000921

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0925

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

3.68E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

E. coli K-12 EMG2

480

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: M24

PMID: 9298646

Protein

E. coli K-12 MG1655

4850

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

4015

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

2803

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

sdhDAB

sdhCDAB-sucABCD

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Figure courtesy of RegulonDB

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Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:756892..756932 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0724 (EcoliWiki Page)

NCBI GEO profiles for sdhB

microarray

GenExpDB:b0724 (EcoliWiki Page)

Summary of data for sdhB from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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Notes

Accessions Related to sdhB Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10932

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0925

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0724

EcoGene

EcoGene:EG10932

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000921

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002468

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000024398 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000018948 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000010479 (score: 0.144)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G40650 (score: 1.000; bootstrap: 100%)
  • AT3G27380 (score: 0.869)
  • AT5G65165 (score: 0.185)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000010949 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00024197 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00006433 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000023278 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014095 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231383 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0014028 (score: 1.000; bootstrap: 100%)
  • FBgn0030975 (score: 0.407)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17170-PA (score: 1.000; bootstrap: 100%)
  • GA20284-PA (score: 0.370)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000000693 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000235768 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000002161 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000012415 (score: 0.788)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003371 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1914930 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6H4G3 (score: 1.000; bootstrap: 100%)
  • Q84VR9 (score: 0.255)
  • Q9XGC8 (score: 0.253)
  • Q9S827 (score: 0.244)
  • Q84VR8 (score: 0.126)
  • Q9S7D3 (score: 0.120)
  • Q9XGC7 (score: 0.120)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000000434 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000010593 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLL041C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC1401 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000130511 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000136891 (score: 0.804)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00020587001 (score: 1.000; bootstrap: 100%)
  • GSTENP00027350001 (score: 0.764)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000029442 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

SDHB

From SHIGELLACYC

E. coli O157

SDHB

From ECOO157CYC

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Notes

Families

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Database Accession Notes
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Notes

Links

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References

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  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).

Categories

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