rnhA:On One Page

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

<protect>

Standard Name

rnhA

Gene Synonym(s)

ECK0214, b0214, JW0204, cer, dasF, herA, rnh, sdrA, sin, G306[1][2]

Product Desc.

RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replication[2][3]

RNase HI; participates in DNA replication[4]

Product Synonyms(s)

ribonuclease HI, degrades RNA of DNA-RNA hybrids[1], B0214[2][1], Sin[2][1], Cer[2][1], Rnh[2][1], SdrA[2][1], HerA[2][1], DasF[2][1], RnhA[2][1] , cer, dasF, ECK0214, herA, JW0204, rnh, sdrA, sin, b0214

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rnhA[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

edit table

</protect> See Help:Quickview for help with entering information in the Quickview table. <protect></protect>

Notes

[back to top]





Gene

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css> <protect>

Nomenclature

[back to top]


See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

rnhA

Mnemonic

RNase H

Synonyms

ECK0214, b0214, JW0204, cer, dasF, herA, rnh, sdrA, sin, G306[1][2]

edit table

</protect>

Notes

Location(s) and DNA Sequence

[back to top]


<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

5.08 minutes 

MG1655: 236002..235535
<gbrowseImage> name=NC_000913:235535..236002 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 238926..238459
<gbrowseImage> name=NC_012967:238459..238926 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 235534..236001
<gbrowseImage> name=NC_012759:235534..236001 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 236002..235535
<gbrowseImage> name=NC_007779:235535..236002 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 210106..209639
<gbrowseImage> name=NC_010473:209639..210106 source=DH10B preset=GeneLocation </gbrowseImage>

edit table

</protect>

Notes

Sequence Features

[back to top]


See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

235535

Edman degradation

PMID:2171503


edit table

<protect></protect>

Notes

Alleles and Phenotypes

[back to top]


See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

rnhA(del) (Keio:JW0204)

deletion

deletion

PMID:16738554

Shigen

CGSC8444[5]

rnhAE48Q

E48Q

Loss of activity

seeded from UniProt:P0A7Y4

rnhAD70N

D70N

Loss of activity

seeded from UniProt:P0A7Y4

rnhAH124A

H124A

Reduces activity

seeded from UniProt:P0A7Y4

rnhAN130A

N130A

Reduces activity

seeded from UniProt:P0A7Y4

rnhAD134A

D134A

Loss of activity

seeded from UniProt:P0A7Y4

rnhAD134H,N

D134H,N

Slight decrease of activity

seeded from UniProt:P0A7Y4

rnhAD10N

D10N

Loss of activity

seeded from UniProt:P0A7Y4

rnhA1

CGSC:8712

rnhA733(del)::kan

PMID:16738554

CGSC:102750

rnh-1 dnaA508

insertion

Origin Indepedence

rnh mutation allows oriC-independent replication

PMID:1650909

CGSC1157[5]

See table 2.

rnh-59 dnaA508

insertion

Origin Indepedence

rnh mutation allows oriC-independent replication

PMID:1650909

CGSC1157[5]

See table 2.

rnh-91 (amber) dnaA508

insertion

Origin Indepedence

The mutation caused differing origins or replication.

PMID:1650909

CGSC1157[5]

See table 2.

rnh-224 (UGA) dnaA508

insertion

Origin Indepedence

The mutation caused differing origins or replication.

PMID:1650909

CGSC1157[5]

See table 2.

rnh-339::cat dnaA508

insertion

Origin Indepedence

The mutation caused differing origins or replication.

PMID:1650909

CGSC1157[5]

See table 2.

rnh-1 recB270

RNase H activity

Decreased activity of RNAse H.

PMID:1650909

The mutation conferred a decrease in RNase H activity by 10 percent. See table 3.

rnh-59 recB270

RNase H activity

Decreased activity of RNAse H.

PMID:1650909

The mutation conferred a decrease in RNase H activity. See table 3.

rnh-91 recB270

RNase H activity

Decreased activity of RNAse H.

PMID:1650909

The mutation conferred a decrease in RNase H activity. See table 3.

rnh-224 recB270

RNase H activity

Decreased activity of RNAse H.

PMID:1650909

The mutation conferred a decrease in RNase H activity. See table 3.

rnh-339::cat recB270

RNase H activity

Decreased activity of RNAse H.

PMID:1650909

The mutation conferred a decrease in RNase H activity. See table 3.

edit table

<protect></protect>

Notes

Genetic Interactions

[back to top]


<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
edit table

</protect>

Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW0204

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCCTTAAACAGGTAGAAATTTT

Primer 2:CCAACTTCAACTTGGTAGCCTGT

7D5

Kohara Phage

Genobase

PMID:3038334

4A11

Kohara Phage

Genobase

PMID:3038334

yafC502::Tn10

Linked marker

CAG18436 = CGSC7328[5]

est. P1 cotransduction: 89% [6]
Synonyms:zae-502::Tn10

proA81::Tn10

Linked marker

CAG18447 = CGSC7330[5]

est. P1 cotransduction: 40% [6]

edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10860

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10860

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946955

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000851

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0853

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000717

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]



Product(s)

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

RnhA

Synonyms

ribonuclease HI, degrades RNA of DNA-RNA hybrids[1], B0214[2][1], Sin[2][1], Cer[2][1], Rnh[2][1], SdrA[2][1], HerA[2][1], DasF[2][1], RnhA[2][1] , cer, dasF, ECK0214, herA, JW0204, rnh, sdrA, sin, b0214

Product description

RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replication[2][3]

RNase HI; participates in DNA replication[4]

EC number (for enzymes)
edit table

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0000287

magnesium ion binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00042

F

Seeded from EcoCyc (v14.0)

complete

GO:0000287

magnesium ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0460

F

Seeded from EcoCyc (v14.0)

complete

GO:0003676

nucleic acid binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002156

F

Seeded from EcoCyc (v14.0)

complete

GO:0006508

proteolysis

P

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0003676

nucleic acid binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR012337

F

Seeded from EcoCyc (v14.0)

complete

GO:0004518

nuclease activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0540

F

Seeded from EcoCyc (v14.0)

complete

GO:0004519

endonuclease activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0255

F

Seeded from EcoCyc (v14.0)

complete

GO:0004523

ribonuclease H activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00042

F

Seeded from EcoCyc (v14.0)

complete

GO:0004523

ribonuclease H activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002156

F

Seeded from EcoCyc (v14.0)

complete

GO:0004523

ribonuclease H activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:3.1.26.4

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00042

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006401

RNA catabolic process

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00042

P

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

GO:0004523

ribonuclease H activity

PMID:4572736

IDA: Inferred from Direct Assay

F

complete

GO:0003676

nucleic acid binding

PMID:4572736

IDA: Inferred from Direct Assay

F

complete

GO:0004519

endonuclease activity

PMID:4572736

IDA: Inferred from Direct Assay

F

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

ssb

PMID:15690043

Experiment(s):EBI-881230, EBI-888507

Protein

aceE

PMID:15690043

Experiment(s):EBI-881230

Protein

aceF

PMID:15690043

Experiment(s):EBI-881230, EBI-888507

Protein

lpdA

PMID:15690043

Experiment(s):EBI-881230

Protein

malP

PMID:15690043

Experiment(s):EBI-881230

Protein

priA

PMID:15690043

Experiment(s):EBI-881230

Protein

recQ

PMID:15690043

Experiment(s):EBI-881230

Protein

rplB

PMID:15690043

Experiment(s):EBI-881230

Protein

rpsC

PMID:15690043

Experiment(s):EBI-881230

Protein

sbcB

PMID:15690043

Experiment(s):EBI-881230

Protein

topA

PMID:15690043

Experiment(s):EBI-881230, EBI-888507

Protein

topB

PMID:15690043

Experiment(s):EBI-881230

Protein

hupA

PMID:15690043

Experiment(s):EBI-888507

Protein

rpmB

PMID:15690043

Experiment(s):EBI-888507

Protein

rpsE

PMID:15690043

Experiment(s):EBI-888507

Protein

rpsI

PMID:15690043

Experiment(s):EBI-888507

Protein

rpsN

PMID:15690043

Experiment(s):EBI-888507

Protein

rpsT

PMID:15690043

Experiment(s):EBI-888507

Protein

yhbY

PMID:15690043

Experiment(s):EBI-888507

Protein

rpsI

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsC

PMID:19402753

MALDI(Z-score):22.098379

Protein

rpsT

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753

LCMS(ID Probability):99.6

Protein

atpD

PMID:19402753

MALDI(Z-score):27.813338

Protein

rplB

PMID:19402753

MALDI(Z-score):28.480234

Protein

hupA

PMID:19402753

LCMS(ID Probability):99.6

Protein

malP

PMID:19402753

MALDI(Z-score):20.695516

Protein

yhbY

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpmB

PMID:19402753

LCMS(ID Probability):99.6

Protein

atpA

PMID:19402753

MALDI(Z-score):23.243464

Protein

topB

PMID:19402753

LCMS(ID Probability):98.0 MALDI(Z-score):26.888562

Protein

topA

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):29.004003

Protein

atpG

PMID:19402753

MALDI(Z-score):39.018288

Protein

priA

PMID:19402753

MALDI(Z-score):17.400508

Protein

ssb

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):6.393986

Protein

recQ

PMID:19402753

MALDI(Z-score):27.556410

Protein

sbcB

PMID:19402753

MALDI(Z-score):18.452946

edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MLKQVEIFTD GSCLGNPGPG GYGAILRYRG REKTFSAGYT RTTNNRMELM AAIVALEALK
EHCEVILSTD SQYVRQGITQ WIHNWKKRGW KTADKKPVKN VDLWQRLDAA LGQHQIKWEW
VKGHAGHPEN ERCDELARAA AMNPTLEDTG YQVEV
Length

155

Mol. Wt

17.596 kDa

pI

8.4 (calculated)

Extinction coefficient

40,450 - 40,825 (calc based on 5 Y, 6 W, and 3 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

2..142

PF00075 RNase H

PMID:19920124

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rnhA taxon=562,83333 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16128201

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946955

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000717

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A7Y4

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10860

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10860

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946955

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000851

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0853

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]




Expression

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

[back to top]


See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MG1655

804

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

175

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

313

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

edit table

Notes

Transcription and Transcriptional Regulation

[back to top]


<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

rnhA

edit table
Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

[back to top]


<protect><gbrowseImage> name=NC_000913:235982..236022 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

</protect>

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

[back to top]


<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
edit table


Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b0214 (EcoliWiki Page)

NCBI GEO profiles for rnhA

microarray

GenExpDB:b0214 (EcoliWiki Page)

Summary of data for rnhA from multiple microarray studies

edit table


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (235927..236085) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ13; Well:A2[7]

edit table

<protect></protect>

Notes

Accessions Related to rnhA Expression

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10860

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0853

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b0214

EcoGene

EcoGene:EG10860

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000851

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000717

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]



Evolution

[back to top]


{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000014694 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000020799 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000031455 (score: 0.775)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00031618 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00019088 (score: 1.000; bootstrap: 85%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000004840 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040718-407 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040718-448 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0023171 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21286-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000026388 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000313350 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000019005 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000018108 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1335073 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000019974 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000011819 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC3366c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000131271 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00020247001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000002604 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Shigella flexneri

RNHA

From SHIGELLACYC

E. coli O157

RNHA

From ECOO157CYC

edit table


Do-It-Yourself Web Tools

<protect></protect>

Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:53098

Panther (EcoliWiki Page)

PTHR10642:SF0

Pfam (EcoliWiki Page)

PF00075 RNase H

EcoCyc

EcoCyc:EG10860

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10860

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000851

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0853

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000717

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 1.17 1.18 1.19 1.20 1.21 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 2.16 2.17 2.18 2.19 2.20 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=rnhA:On_One_Page&oldid=218609"