rne:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

Quickview

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Standard Name

rne

Gene Synonym(s)

ECK1069, b1084, JW1071, ams, hmp1, rne_1, smbB[1], smbB

Product Desc.

Rne[2][3];

Component of ribonuclease E[3]; degradosome[3]

RNase E; component of RNA degradosome; mRNA turnover; 5S and 16S RNA maturation[4]

Product Synonyms(s)

fused ribonucleaseE: endoribonuclease[1], RNA-binding protein[1], RNA degradosome binding protein[1], B1084[2][1], SmbB[2][1], Ams[2][1], Rne[2][1], RNase E[2][1] , ams, ECK1069, hmp1, JW1071, smbB, b1084

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rne[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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The degradosome is organized with a helical cytoskeletal localization (Taghbalout, 2007).[4]



Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

rne

Mnemonic

RNase E

Synonyms

ECK1069, b1084, JW1071, ams, hmp1, rne_1, smbB[1], smbB

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

24.58 minutes 

MG1655: 1143590..1140405
<gbrowseImage> name=NC_000913:1140405..1143590 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1158936..1155751
<gbrowseImage> name=NC_012967:1155751..1158936 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1044330..1047515
<gbrowseImage> name=NC_012759:1044330..1047515 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1145944..1142759
<gbrowseImage> name=NC_007779:1142759..1145944 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1199035..1195850
<gbrowseImage> name=NC_010473:1195850..1199035 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

1140405

Edman degradation

PMID:2011493


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

rne-3071(ts)

temperature sensitive

PMID:8320240 PMID:1846032

CGSC:7537

rne3071

mRNA degredation

RNase E deficient mutation causes accumulation of P1-t1 in strain due to lack of RNase E cleave of 3' terminal hairpin stricture, Figure 4.

PMID:7519147

rne3071

mRNA degredation

This temperature sensitive mutation up regulates mutL-miaA which are co transcribed, and promoters Pmia and P1hfq by a factor of 3, 7 and 8 fold. Table 2.

PMID:7748952

Strain:N3431


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Notes

Genetic Interactions

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<protect>

Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW1071

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:gccAAAAGAATGTTAATCAACGCAACTCAG

Primer 2:cctTCAACAGGTTGCGGACGCGCAGGAGCG

E3G11

Kohara Phage

Genobase

PMID:3038334

14C1

Kohara Phage

Genobase

PMID:3038334

zcc-282::Tn10

Linked marker

CAG18466 = CGSC7359[5]

est. P1 cotransduction: % [6]

zce-726::Tn10

Linked marker

CAG12078 = CGSC7361[5]

est. P1 cotransduction: 59% [6]

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10859

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10859

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000850

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:945641

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0852

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003668

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

Rne

Synonyms

fused ribonucleaseE: endoribonuclease[1], RNA-binding protein[1], RNA degradosome binding protein[1], B1084[2][1], SmbB[2][1], Ams[2][1], Rne[2][1], RNase E[2][1] , ams, ECK1069, hmp1, JW1071, smbB, b1084

Product description

Rne[2][3];

Component of ribonuclease E[3]; degradosome[3]

RNase E; component of RNA degradosome; mRNA turnover; 5S and 16S RNA maturation[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003029

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0694

F

Seeded from EcoCyc (v14.0)

complete

GO:0004518

nuclease activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0540

F

Seeded from EcoCyc (v14.0)

complete

GO:0004519

endonuclease activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0255

F

Seeded from EcoCyc (v14.0)

complete

GO:0004540

ribonuclease activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004659

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004659

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006396

RNA processing

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR004659

P

Seeded from EcoCyc (v14.0)

complete

GO:0016787

hydrolase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0378

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of ribonuclease E

could be indirect

Protein

deaD

PMID:15690043

Experiment(s):EBI-888473

Protein

dnaK

PMID:15690043

Experiment(s):EBI-888473, EBI-893488

Protein

eno

PMID:15690043

Experiment(s):EBI-888473, EBI-880413, EBI-885840, EBI-893488

Protein

fabZ

PMID:15690043

Experiment(s):EBI-888473

Protein

fruR

PMID:15690043

Experiment(s):EBI-888473

Protein

pnp

PMID:15690043

Experiment(s):EBI-888473, EBI-883913, EBI-891089, EBI-893488

Protein

rplA

PMID:15690043

Experiment(s):EBI-888473

Protein

rplB

PMID:15690043

Experiment(s):EBI-888473, EBI-893488

Protein

rplC

PMID:15690043

Experiment(s):EBI-888473, EBI-893488

Protein

rplD

PMID:15690043

Experiment(s):EBI-888473, EBI-893488

Protein

rplI

PMID:15690043

Experiment(s):EBI-888473

Protein

rplK

PMID:15690043

Experiment(s):EBI-888473, EBI-893488

Protein

rplV

PMID:15690043

Experiment(s):EBI-888473, EBI-893488

Protein

rpsB

PMID:15690043

Experiment(s):EBI-888473

Protein

rpsC

PMID:15690043

Experiment(s):EBI-888473

Protein

rpsD

PMID:15690043

Experiment(s):EBI-888473, EBI-893488

Protein

rpsG

PMID:15690043

Experiment(s):EBI-888473, EBI-893488

Protein

rpsU

PMID:15690043

Experiment(s):EBI-888473

Protein

srmB

PMID:15690043

Experiment(s):EBI-888473

Protein

tufA

PMID:15690043

Experiment(s):EBI-888473

Protein

rnr

PMID:15690043

Experiment(s):EBI-888473

Protein

ycbY

PMID:15690043

Experiment(s):EBI-888473

Protein

rluB

PMID:15690043

Experiment(s):EBI-888473

Protein

yfiQ

PMID:15690043

Experiment(s):EBI-888473

Protein

rplL

PMID:15690043

Experiment(s):EBI-893488

Protein

rplM

PMID:15690043

Experiment(s):EBI-893488

Protein

rplU

PMID:15690043

Experiment(s):EBI-893488

Protein

rplW

PMID:15690043

Experiment(s):EBI-893488

Protein

rplX

PMID:15690043

Experiment(s):EBI-893488

Protein

rpsE

PMID:15690043

Experiment(s):EBI-893488

Protein

rpsF

PMID:15690043

Experiment(s):EBI-893488

Protein

rpsJ

PMID:15690043

Experiment(s):EBI-893488

Protein

rpsP

PMID:15690043

Experiment(s):EBI-893488

Protein

rpsT

PMID:15690043

Experiment(s):EBI-893488

Protein

yfiF

PMID:15690043

Experiment(s):EBI-893488

Protein

tufB

PMID:19402753

MALDI(Z-score):20.139108

Protein

rplK

PMID:19402753

LCMS(ID Probability):99.2 MALDI(Z-score):17.053160

Protein

rpsJ

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsP

PMID:19402753

LCMS(ID Probability):99.6

Protein

eno

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):39.667839

Protein

rpsF

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplU

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsT

PMID:19402753

LCMS(ID Probability):99.6

Protein

rpsD

PMID:19402753

LCMS(ID Probability):99.4 MALDI(Z-score):37.560803

Protein

rplM

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplX

PMID:19402753

LCMS(ID Probability):99.6

Protein

srmB

PMID:19402753

MALDI(Z-score):25.669160

Protein

rplB

PMID:19402753

LCMS(ID Probability):99.4 MALDI(Z-score):38.914031

Protein

rpsC

PMID:19402753

MALDI(Z-score):34.363850

Protein

rplA

PMID:19402753

MALDI(Z-score):32.032056

Protein

pnp

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):48.805794

Protein

hfq

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):18.980165

Protein

yfiF

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):23.414397

Protein

rnr

PMID:19402753

MALDI(Z-score):25.940957

Protein

rplD

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):19.506531

Protein

rluB

PMID:19402753

MALDI(Z-score):39.206232

Protein

deaD

PMID:19402753

LCMS(ID Probability):92.5 MALDI(Z-score):26.713564

Protein

rplL

PMID:19402753

LCMS(ID Probability):99.6

Protein

Subunits of degradosome

could be indirect


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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

Cytoplasm

PMID:2011493

EchoLocation:rne


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKRMLINATQ QEELRVALVD GQRLYDLDIE SPGHEQKKAN IYKGKITRIE PSLEAAFVDY
GAERHGFLPL KEIAREYFPA NYSAHGRPNI KDVLREGQEV IVQIDKEERG NKGAALTTFI
SLAGSYLVLM PNNPRAGGIS RRIEGDDRTE LKEALASLEL PEGMGLIVRT AGVGKSAEAL
QWDLSFRLKH WEAIKKAAES RPAPFLIHQE SNVIVRAFRD YLRQDIGEIL IDNPKVLELA
RQHIAALGRP DFSSKIKLYT GEIPLFSHYQ IESQIESAFQ REVRLPSGGS IVIDSTEALT
AIDINSARAT RGGDIEETAF NTNLEAADEI ARQLRLRDLG GLIVIDFIDM TPVRHQRAVE
NRLREAVRQD RARIQISHIS RFGLLEMSRQ RLSPSLGESS HHVCPRCSGT GTVRDNESLS
LSILRLIEEE ALKENTQEVH AIVPVPIASY LLNEKRSAVN AIETRQDGVR CVIVPNDQME
TPHYHVLRVR KGEETPTLSY MLPKLHEEAM ALPSEEEFAE RKRPEQPALA TFAMPDVPPA
PTPAEPAAPV VAPAPKAAPA TPAAPAQPGL LSRFFGALKA LFSGGEETKP TEQPAPKAEA
KPERQQDRRK PRQNNRRDRN ERRDTRSERT EGSDNREENR RNRRQAQQQT AETRESRQQA
EVTEKARTAD EQQAPRRERS RRRNDDKRQA QQEAKALNVE EQSVQETEQE ERVRPVQPRR
KQRQLNQKVR YEQSVAEEAV VAPVVEETVA AEPIVQEAPA PRTELVKVPL PVVAQTAPEQ
QEENNADNRD NGGMPRRSRR SPRHLRVSGQ RRRRYRDERY PTQSPMPLTV ACASPELASG
KVWIRYPIVR PQDVQVEEQR EQEEVHVQPM VTEVPVAAAI EPVVSAPVVE EVAGVVEAPV
QVAEPQPEVV ETTHPEVIAA AVTEQPQVIT ESDVAVAQEV AEQAEPVVEP QEETADIEEV
VETAEVVVAE PEVVAQPAAP VVAEVAAEVE TVAAVEPEVT VEHNHATAPM TRAPAPEYVP
EAPRHSDWQR PTFAFEGKGA AGGHTATHHA SAAPARPQPV E
Length

1,061

Mol. Wt

118.193 kDa

pI

5.5 (calculated)

Extinction coefficient

47,330 - 47,830 (calc based on 17 Y, 4 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

35..119

PF00575 S1 RNA binding domain

PMID:19920124

Domain

121..393

PF10150 Ribonuclease E/G family

PMID:19920124

Domain

1021..1059

PF12111 Polyribonucleotide phosphorylase C terminal

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=rne taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129047

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945641

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003668

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P21513

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10859

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10859

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945641

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000850

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0852

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MC4100

4.77E+02

molecules/cell

  • Medium: median data from rich and minimal media
  • Temperature (°C): 37
  • Doubling time (min): Growth Rate(min):
  • Growth phase: other:

emPAI

PMID:18304323

Protein

E. coli K-12 MG1655

2729

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

1061

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

2125

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

rne

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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:1143570..1143610 source=MG1655 flip=1 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b1084 (EcoliWiki Page)

NCBI GEO profiles for rne

microarray

GenExpDB:b1084 (EcoliWiki Page)

Summary of data for rne from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (1143514..1143708) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ04; Well:G4[7]

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Notes

Accessions Related to rne Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10859

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0852

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1084

EcoGene

EcoGene:EG10859

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000850

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003668

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000031901 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000020550 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000018040 (score: 0.051)

From Inparanoid:20070104

Danio rerio

  • ZDB-CDNA-050522-68 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-030131-5005 (score: 0.919)
  • ZDB-CDNA-040930-2 (score: 0.140)
  • ZDB-GENE-040930-2 (score: 0.140)
  • ZDB-CDNA-041114-95 (score: 0.119)
  • ZDB-GENE-041114-95 (score: 0.119)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0031264 (score: 1.000; bootstrap: 59%)
  • FBgn0000181 (score: 0.095)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA15126-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000286104 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000040217 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RNE

From SHIGELLACYC

E. coli O157

RNE

From ECOO157CYC

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Do-It-Yourself Web Tools

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:50249

Pfam (EcoliWiki Page)

PF00575 S1 RNA binding domain

Pfam (EcoliWiki Page)

PF10150 Ribonuclease E/G family

Pfam (EcoliWiki Page)

PF12111 Polyribonucleotide phosphorylase C terminal

EcoCyc

EcoCyc:EG10859

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10859

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000850

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0852

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003668

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 1.12 1.13 1.14 1.15 1.16 1.17 1.18 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 4.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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