pykF:On One Page

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Quickview | Gene | Product(s) | Expression| Evolution | References |

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Standard Name

pykF

Gene Synonym(s)

ECK1672, b1676, JW1666[1], JW1666

Product Desc.

pyruvate kinase I[2][3];

Component of pyruvate kinase I[2][3]

Pyruvate kinase I, fructose 1,6-bisphosphate-activated[4]

Product Synonyms(s)

pyruvate kinase I[1], B1676[2][1], PykF[2][1] , ECK1672, JW1666, b1676

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): pykF[2]

Regulation/Activity
Quick Links

porteco.png EcoCyc.gif regulondb.jpg

dnadisplay.png proteindisplay.png   pubmed.jpg   textpresso.jpg  

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Notes

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Gene

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Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

pykF

Mnemonic

Pyruvate kinase

Synonyms

ECK1672, b1676, JW1666[1], JW1666

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Notes

Location(s) and DNA Sequence

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<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

37.8 minutes 

MG1655: 1753722..1755134
<gbrowseImage> name=NC_000913:1753722..1755134 source=MG1655 preset=GeneLocation </gbrowseImage>

REL606

NC_012967: 1732965..1734377
<gbrowseImage> name=NC_012967:1732965..1734377 source=REL606 preset=GeneLocation </gbrowseImage>

BW2952

NC_012759: 1645781..1647193
<gbrowseImage> name=NC_012759:1645781..1647193 source=BW2952 preset=GeneLocation </gbrowseImage>

W3110

 

W3110: 1757412..1758824
<gbrowseImage> name=NC_007779:1757412..1758824 source=W3110 preset=GeneLocation </gbrowseImage>

DH10B

DH10B: 1844293..1845705
<gbrowseImage> name=NC_010473:1844293..1845705 source=DH10B preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes

Coding Start (SO:0000323)

MG1655

1753722

Edman degradation

PMID:1859631
PMID:9298646


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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ΔpykF (Keio:JW1666)

deletion

deletion

PMID:16738554

Shigen
CGSC9416[5]

pykF::Tn5KAN-2 (FB20420)

Insertion at nt 400 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20420

does not contain pKD46

pykF::Tn5KAN-2 (FB20421)

Insertion at nt 400 in Plus orientation

PMID:15262929

E. coli Genome Project:FB20421

contains pKD46

ΔpykF751::kan

PMID:16738554

CGSC:102564


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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference

JW1666

Plasmid clone

Shigen

PMID:16769691

Status:Clone OK

Primer 1:GCCAAAAAGACCAAAATTGTTTG

Primer 2:CCaAGGACGTGAACAGATGCGGT

13H4

Kohara Phage

Genobase

PMID:3038334

zdd-235::Tn10

Linked marker

CAG18461 = CGSC7378[5]

est. P1 cotransduction: % [6]
Synonyms:zdc-235::Tn10

zdi-925::Tn10

Linked marker

CAG12151 = CGSC7385[5]

est. P1 cotransduction: 42% [6]
Synonyms:zdh-925::Tn10

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10804

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10804

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000795

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:946179

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0797

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005600

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Product(s)

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Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

PykF

Synonyms

pyruvate kinase I[1], B1676[2][1], PykF[2][1] , ECK1672, JW1666, b1676

Product description

pyruvate kinase I[2][3];

Component of pyruvate kinase I[2][3]

Pyruvate kinase I, fructose 1,6-bisphosphate-activated[4]

EC number (for enzymes)
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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

GO:0005737

cytoplasm

C

Seeded from Riley et al 2006 [1].

Missing: evidence, reference

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0000287

magnesium ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001697

F

Seeded from EcoCyc (v14.0)

complete

GO:0000287

magnesium ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015793

F

Seeded from EcoCyc (v14.0)

complete

GO:0000287

magnesium ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015794

F

Seeded from EcoCyc (v14.0)

complete

GO:0000287

magnesium ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0460

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015813

F

Seeded from EcoCyc (v14.0)

complete

GO:0004743

pyruvate kinase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001697

F

Seeded from EcoCyc (v14.0)

complete

GO:0004743

pyruvate kinase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015793

F

Seeded from EcoCyc (v14.0)

complete

GO:0004743

pyruvate kinase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015794

F

Seeded from EcoCyc (v14.0)

complete

GO:0004743

pyruvate kinase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.7.1.40

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0005829

cytosol

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0006096

glycolysis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001697

P

Seeded from EcoCyc (v14.0)

complete

GO:0006096

glycolysis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015793

P

Seeded from EcoCyc (v14.0)

complete

GO:0006096

glycolysis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015794

P

Seeded from EcoCyc (v14.0)

complete

GO:0006096

glycolysis

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0324

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

PMID:16858726

IDA: Inferred from Direct Assay

C

Seeded from EcoCyc (v14.0)

complete

GO:0016301

kinase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0418

F

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

GO:0030955

potassium ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001697

F

Seeded from EcoCyc (v14.0)

complete

GO:0030955

potassium ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015793

F

Seeded from EcoCyc (v14.0)

complete

GO:0030955

potassium ion binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR015794

F

Seeded from EcoCyc (v14.0)

complete

GO:0030955

potassium ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0630

F

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of pyruvate kinase I

could be indirect

Protein

yraI

PMID:16606699

Experiment(s):EBI-1140456

Protein

rbsR

PMID:16606699

Experiment(s):EBI-1140456

Protein

rpsA

PMID:16606699

Experiment(s):EBI-1140456

Protein

infB

PMID:16606699

Experiment(s):EBI-1140456

Protein

deoD

PMID:16606699

Experiment(s):EBI-1140456

Protein

tyrS

PMID:16606699

Experiment(s):EBI-1140456

Protein

cyaA

PMID:16606699

Experiment(s):EBI-1140456

Protein

dnaK

PMID:16606699

Experiment(s):EBI-1140456

Protein

sxy

PMID:16606699

Experiment(s):EBI-1140456

Protein

prs

PMID:16606699

Experiment(s):EBI-1140456

Protein

pflB

PMID:16606699

Experiment(s):EBI-1140456

Protein

nadE

PMID:16606699

Experiment(s):EBI-1140456

Protein

pldA

PMID:16606699

Experiment(s):EBI-1140456

Protein

yjcC

PMID:16606699

Experiment(s):EBI-1140456

Protein

hybO

PMID:16606699

Experiment(s):EBI-1140456

Protein

yheS

PMID:16606699

Experiment(s):EBI-1140456

Protein

imp

PMID:16606699

Experiment(s):EBI-1140456

Protein

gfcD

PMID:16606699

Experiment(s):EBI-1140456

Protein

rpsS

PMID:19402753

LCMS(ID Probability):99.6

Protein

murF

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplQ

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplX

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplP

PMID:19402753

LCMS(ID Probability):99.6

Protein

ybgI

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplI

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplS

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):28.698600

Protein

rpsM

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplA

PMID:19402753

LCMS(ID Probability):99.6

Protein

tig

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):25.306932

Protein

rplM

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplB

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):12.914124

Protein

nrdD

PMID:19402753

LCMS(ID Probability):99.6 MALDI(Z-score):6.517026

Protein

yibL

PMID:19402753

LCMS(ID Probability):99.6

Protein

hupA

PMID:19402753

LCMS(ID Probability):99.6

Protein

hupB

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplY

PMID:19402753

LCMS(ID Probability):99.6

Protein

rplD

PMID:19402753

LCMS(ID Probability):99.6

Protein

rluB

PMID:19402753

MALDI(Z-score):18.719238

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKKTKIVCTI GPKTESEEML AKMLDAGMNV MRLNFSHGDY AEHGQRIQNL RNVMSKTGKT
AAILLDTKGP EIRTMKLEGG NDVSLKAGQT FTFTTDKSVI GNSEMVAVTY EGFTTDLSVG
NTVLVDDGLI GMEVTAIEGN KVICKVLNNG DLGENKGVNL PGVSIALPAL AEKDKQDLIF
GCEQGVDFVA ASFIRKRSDV IEIREHLKAH GGENIHIISK IENQEGLNNF DEILEASDGI
MVARGDLGVE IPVEEVIFAQ KMMIEKCIRA RKVVITATQM LDSMIKNPRP TRAEAGDVAN
AILDGTDAVM LSGESAKGKY PLEAVSIMAT ICERTDRVMN SRLEFNNDNR KLRITEAVCR
GAVETAEKLD APLIVVATQG GKSARAVRKY FPDATILALT TNEKTAHQLV LSKGVVPQLV
KEITSTDDFY RLGKELALQS GLAHKGDVVV MVSGALVPSG TTNTASVHVL
Length

470

Mol. Wt

50.729 kDa

pI

6.0 (calculated)

Extinction coefficient

7,450 - 8,200 (calc based on 5 Y, 0 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Modification Site

36

phosphorylation site at S36

probability greater than 75%

PMID:17938405

Domain

1..345

PF00224 Pyruvate kinase, barrel domain

PMID:19920124

Domain

355..469

PF02887 Pyruvate kinase, alpha/beta domain

PMID:19920124

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=pykF taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129632

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946179

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005600

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AD61

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG10804

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10804

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946179

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000795

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0797

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Expression

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Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

Ecoli K-12

0.152+/-0.045

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

Single Molecule Fluorescence

PMID:20671182

mRNA

Ecoli K-12

0.316572238

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Doubling time (min): Growth Rate(min): *
  • Growth phase: other: *

by RNA_Seq

PMID:20671182

Protein

E. coli K-12 EMG2

500

molecules/cell

  • Medium: MOPS glucose minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • Growth phase: Exponential
  • OD: OD600 = 0.2 to 0.25
  • other: aerated

Quantitative protein sequencing

Spot ID: M83

PMID: 9298646

Protein

E. coli K-12 MG1655

12968

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

6184

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

Protein

E. coli K-12 MG1655

6623

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID: 24766808

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Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

pykF

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Figure courtesy of RegulonDB

</protect>

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

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<protect><gbrowseImage> name=NC_000913:1753702..1753742 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.

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Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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<protect> Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b1676 (EcoliWiki Page)

NCBI GEO profiles for pykF

microarray

GenExpDB:b1676 (EcoliWiki Page)

Summary of data for pykF from multiple microarray studies

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Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (1753070..1753745) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ02; Well:A8[7]

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Notes

Accessions Related to pykF Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG10804

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0797

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b1676

EcoGene

EcoGene:EG10804

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000795

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005600

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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Evolution

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Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000021580 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000018774 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G63680 (score: 1.000; bootstrap: 97%)
  • AT5G08570 (score: 0.901)
  • AT5G56350 (score: 0.643)
  • AT4G26390 (score: 0.612)
  • AT3G04050 (score: 0.493)
  • AT3G25960 (score: 0.464)
  • AT3G55650 (score: 0.463)
  • AT3G55810 (score: 0.379)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000002099 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000022683 (score: 0.502)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00036739 (score: 1.000; bootstrap: 100%)
  • WBGene00028310 (score: 0.453)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009126 (score: 1.000; bootstrap: 100%)
  • WBGene00014001 (score: 0.382)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000026035 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000024956 (score: 0.488)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000008557 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-031201-4 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-663 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-662 (score: 0.942)
  • ZDB-CDNA-040801-244 (score: 0.713)
  • ZDB-GENE-040801-230 (score: 0.713)
  • ZDB-CDNA-040425-661 (score: 0.483)
  • ZDB-GENE-010907-1 (score: 0.483)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231421 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0003178 (score: 1.000; bootstrap: 99%)
  • FBgn0031462 (score: 0.143)
  • FBgn0038952 (score: 0.135)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA20296-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000034108 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000320171 (score: 1.000; bootstrap: 100%)
  • ENSP00000335066 (score: 0.556)
  • ENSP00000271946 (score: 0.532)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000030465 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000030876 (score: 0.169)
  • ENSMMUP00000013347 (score: 0.164)
  • ENSMMUP00000019192 (score: 0.118)
  • ENSMMUP00000005543 (score: 0.097)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000021280 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000002312 (score: 0.427)

From Inparanoid:20070104

Mus musculus

  • MGI:97591 (score: 1.000; bootstrap: 100%)
  • MGI:97604 (score: 0.533)

From Inparanoid:20070104

Oryza gramene

  • Q7XKB5 (score: 1.000; bootstrap: 99%)
  • Q5NBQ0 (score: 0.626)
  • Q6IUP7 (score: 0.616)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000012388 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000001950 (score: 0.553)
  • ENSPTRP00000002406 (score: 0.346)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000015398 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000027700 (score: 0.508)
  • ENSRNOP00000044170 (score: 0.505)
  • ENSRNOP00000040032 (score: 0.491)
  • ENSRNOP00000015275 (score: 0.076)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YAL038W (score: 1.000; bootstrap: 100%)
  • YOR347C (score: 0.597)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC4H30c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000141035 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000128238 (score: 0.778)
  • NEWSINFRUP00000129186 (score: 0.299)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00025632001 (score: 1.000; bootstrap: 100%)
  • GSTENP00012066001 (score: 0.726)
  • GSTENP00015375001 (score: 0.449)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000028820 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000011366 (score: 0.656)

From Inparanoid:20070104

Shigella flexneri

PYKF

From SHIGELLACYC

E. coli O157

PYKF

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:50800

Superfamily (EcoliWiki Page)

SUPERFAMILY:51621

Superfamily (EcoliWiki Page)

SUPERFAMILY:52935

Pfam (EcoliWiki Page)

PF00224 Pyruvate kinase, barrel domain

Pfam (EcoliWiki Page)

PF02887 Pyruvate kinase, alpha/beta domain

EcoCyc

EcoCyc:EG10804

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10804

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000795

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0797

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005600

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 CGSC: The Coli Genetics Stock Center
  6. ↑ 6.0 6.1 The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
  7. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed

Categories

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